메뉴 건너뛰기




Volumn 2, Issue 11, 2008, Pages 1134-1145

Characterization of Fe(II) oxidizing bacterial activities and communities at two acidic Appalachian coalmine drainage-impacted sites

Author keywords

Acidic mine drainage; Fe(II) oxidizing bacteria; Iron

Indexed keywords

ACID; BACTERIAL DNA; BACTERIAL RNA; FERROUS ION; IRON; RIBOSOMAL SPACER DNA; RIBOSOME DNA; RNA 16S;

EID: 55549147887     PISSN: 17517362     EISSN: 17517370     Source Type: Journal    
DOI: 10.1038/ismej.2008.60     Document Type: Article
Times cited : (58)

References (55)
  • 3
    • 0037447834 scopus 로고    scopus 로고
    • Microbial communities in acid mine drainage
    • Baker BJ, Banfield JF. (2003). Microbial communities in acid mine drainage. FEMS Microbiol Ecol 44: 139-152.
    • (2003) FEMS Microbiol Ecol , vol.44 , pp. 139-152
    • Baker, B.J.1    Banfield, J.F.2
  • 5
    • 84874980858 scopus 로고    scopus 로고
    • Eukaryotic stromatolite builders in acid mine drainage: Implications for Precambrian iron formations and oxygenation of the atmosphere?
    • Brake SS, Hasiotis ST, Dannelly HK, Connors KA. (2002). Eukaryotic stromatolite builders in acid mine drainage: implications for Precambrian iron formations and oxygenation of the atmosphere? Geology 30: 599-602.
    • (2002) Geology , vol.30 , pp. 599-602
    • Brake, S.S.1    Hasiotis, S.T.2    Dannelly, H.K.3    Connors, K.A.4
  • 6
    • 33748805463 scopus 로고    scopus 로고
    • Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation
    • Brodie EL, DeSantis TZ, Joyner DC, Baek SM, Larsen JT, Anderson GL et al. (2006). Application of a high-density oligonucleotide microarray approach to study bacterial population dynamics during uranium reduction and reoxidation. Appl Environ Microbiol 72: 6288-6298.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 6288-6298
    • Brodie, E.L.1    DeSantis, T.Z.2    Joyner, D.C.3    Baek, S.M.4    Larsen, J.T.5    Anderson, G.L.6
  • 8
    • 0038630697 scopus 로고    scopus 로고
    • Bacterial immobilization of arsenic in acid mine drainage (Carnoulès creek, France)
    • Casiot C, Morin G, Juillot F, Bruneel O, Personné J-C, Leblanc M et al. (2003). Bacterial immobilization of arsenic in acid mine drainage (Carnoulès creek, France). Wat Res 37: 2929-2936.
    • (2003) Wat Res , vol.37 , pp. 2929-2936
    • Casiot, C.1    Morin, G.2    Juillot, F.3    Bruneel, O.4    Personné, J.-C.5    Leblanc, M.6
  • 9
    • 25144458884 scopus 로고    scopus 로고
    • Dissimilatory iron reduction and odor abatement by biofilm communities in swine manure microcosms
    • Castillo-Gonzalez HA, Bruns MA. (2005). Dissimilatory iron reduction and odor abatement by biofilm communities in swine manure microcosms. Appl Environ Microbiol 71: 4972-4978.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 4972-4978
    • Castillo-Gonzalez, H.A.1    Bruns, M.A.2
  • 10
    • 0029988467 scopus 로고    scopus 로고
    • Acidimicrobium ferrooxidans gen. nov., sp. nov.: Mixed-culture ferrous iron oxidation with Sulfobacillus species
    • Clark DA, Norris PR. (1996). Acidimicrobium ferrooxidans gen. nov., sp. nov.: mixed-culture ferrous iron oxidation with Sulfobacillus species. Microbiology 142: 785-790.
    • (1996) Microbiology , vol.142 , pp. 785-790
    • Clark, D.A.1    Norris, P.R.2
  • 11
    • 0037251969 scopus 로고    scopus 로고
    • The Ribosomal Database Project (RDP-II): Previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy
    • Cole JR, Chai B, Marsh TL, Farris RJ, Wang Q, Kulam SA et al. (2003). The Ribosomal Database Project (RDP-II): previewing a new autoaligner that allows regular updates and the new prokaryotic taxonomy. Nucleic Acids Res 31: 442-443.
    • (2003) Nucleic Acids Res , vol.31 , pp. 442-443
    • Cole, J.R.1    Chai, B.2    Marsh, T.L.3    Farris, R.J.4    Wang, Q.5    Kulam, S.A.6
  • 12
    • 33745793824 scopus 로고    scopus 로고
    • Microbial diversity in alpine tundra wet meadow soil: Novel Chloroflexi from a cold, water saturated environment
    • Costello EK, Schmidt SK. (2006). Microbial diversity in alpine tundra wet meadow soil: novel Chloroflexi from a cold, water saturated environment. Environ Microbiol 8: 1471-1486.
    • (2006) Environ Microbiol , vol.8 , pp. 1471-1486
    • Costello, E.K.1    Schmidt, S.K.2
  • 13
    • 33745296397 scopus 로고    scopus 로고
    • Geochemistry and microbiology of an impounded subterranean acidic water body at Myndd Parys, Anglesey, Wales
    • Coupland K, Johnson DB. (2004). Geochemistry and microbiology of an impounded subterranean acidic water body at Myndd Parys, Anglesey, Wales. Geobiology 2: 77-86.
    • (2004) Geobiology , vol.2 , pp. 77-86
    • Coupland, K.1    Johnson, D.B.2
  • 14
    • 0040165690 scopus 로고    scopus 로고
    • Frequency distribution of the pH of coal-mine drainage in Pennsylvania
    • United States Geological Survey 99-4018A, USGS Toxic Substances Hydrology Program
    • Cravotta III CA, Brady KBC, Rose AW, Douds JB. (1999). Frequency distribution of the pH of coal-mine drainage in Pennsylvania. Water-Resources Investigations Report (United States Geological Survey) 99-4018A, USGS Toxic Substances Hydrology Program. 1: 313-324.
    • (1999) Water-Resources Investigations Report , vol.1 , pp. 313-324
    • Cravotta III, C.A.1    Brady, K.B.C.2    Rose, A.W.3    Douds, J.B.4
  • 15
    • 38949166730 scopus 로고    scopus 로고
    • Dissolved metals and associated constituents in abandoned coal-mine discharges, Pennsylvania, USA. Part 1: Constituent quantities and correlations
    • Cravotta III CA. (2008). Dissolved metals and associated constituents in abandoned coal-mine discharges, Pennsylvania, USA. Part 1: Constituent quantities and correlations. Appl Geochem 23: 166-202.
    • (2008) Appl Geochem , vol.23 , pp. 166-202
    • Cravotta III, C.A.1
  • 16
    • 0032917931 scopus 로고    scopus 로고
    • Limestone drains to increase pH and remove dissolved metals from acidic mine drainage
    • Cravotta III CA, Trahan MK. (1999). Limestone drains to increase pH and remove dissolved metals from acidic mine drainage. Appl Geochem 14: 581-606.
    • (1999) Appl Geochem , vol.14 , pp. 581-606
    • Cravotta III, C.A.1    Trahan, M.K.2
  • 17
    • 13544277388 scopus 로고    scopus 로고
    • Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria
    • Davis KER, Joseph SJ, Janssen PH. (2005). Effects of growth medium, inoculum size, and incubation time on culturability and isolation of soil bacteria. Appl Environ Microbiol 71: 826-834.
    • (2005) Appl Environ Microbiol , vol.71 , pp. 826-834
    • Davis, K.E.R.1    Joseph, S.J.2    Janssen, P.H.3
  • 19
    • 55549088264 scopus 로고    scopus 로고
    • Drummond AJ, Ashton B, Cheung M, Heled J, Kearse M, Moir R et al. (2007). Geneious v3.0. Available from http://www.geneious.com/.
    • Drummond AJ, Ashton B, Cheung M, Heled J, Kearse M, Moir R et al. (2007). Geneious v3.0. Available from http://www.geneious.com/.
  • 21
    • 33947265539 scopus 로고    scopus 로고
    • Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages
    • Gomez-Alvarez V, King GM, Nüsslein K. (2007). Comparative bacterial diversity in recent Hawaiian volcanic deposits of different ages. FEMS Microbiol Ecol 60: 60-73.
    • (2007) FEMS Microbiol Ecol , vol.60 , pp. 60-73
    • Gomez-Alvarez, V.1    King, G.M.2    Nüsslein, K.3
  • 22
    • 33644950982 scopus 로고    scopus 로고
    • Macroscopic streamer growths in acidic, metal-rich mine waters in North Wales consist of novel and remarkably simple bacterial communities
    • Hallberg KB, Coupland K, Kimura S, Johnson DB. (2006). Macroscopic streamer growths in acidic, metal-rich mine waters in North Wales consist of novel and remarkably simple bacterial communities. Appl Environ Microbiol 72: 2022-2030.
    • (2006) Appl Environ Microbiol , vol.72 , pp. 2022-2030
    • Hallberg, K.B.1    Coupland, K.2    Kimura, S.3    Johnson, D.B.4
  • 23
    • 0141938368 scopus 로고    scopus 로고
    • Novel acidophiles isolated form moderately acidic mine drainage waters
    • Hallberg KB, Johnson DB. (2003). Novel acidophiles isolated form moderately acidic mine drainage waters. Hydrometallurgy 71: 139-148.
    • (2003) Hydrometallurgy , vol.71 , pp. 139-148
    • Hallberg, K.B.1    Johnson, D.B.2
  • 24
    • 12944298784 scopus 로고    scopus 로고
    • Microbiology of a wetland ecosystem constructed to remediate mine drainage from a heavy metal mine
    • Hallberg KB, Johnson DB. (2005). Microbiology of a wetland ecosystem constructed to remediate mine drainage from a heavy metal mine. Sci Tot Environ 338: 53-56.
    • (2005) Sci Tot Environ , vol.338 , pp. 53-56
    • Hallberg, K.B.1    Johnson, D.B.2
  • 25
    • 0025397955 scopus 로고
    • Regional estimates of acid mine drainage impact on streams in the Mid-Atlantic and Southeastern United States
    • Herlihy AT, Kaufmann PR, Mitch ME. (1990). Regional estimates of acid mine drainage impact on streams in the Mid-Atlantic and Southeastern United States. Wat Air Soil Pollut 50: 91-107.
    • (1990) Wat Air Soil Pollut , vol.50 , pp. 91-107
    • Herlihy, A.T.1    Kaufmann, P.R.2    Mitch, M.E.3
  • 26
    • 0029090674 scopus 로고
    • Selective solid media for isolating and enumerating acidophilic bacteria
    • Johnson DB. (1995). Selective solid media for isolating and enumerating acidophilic bacteria. J Microbiol Meth 23: 205-218.
    • (1995) J Microbiol Meth , vol.23 , pp. 205-218
    • Johnson, D.B.1
  • 28
    • 12944323182 scopus 로고    scopus 로고
    • Acid mine drainage remediation options: A review
    • Johnson DB, Hallberg KB. (2005). Acid mine drainage remediation options: a review. Sci Tot Environ 338: 3-14.
    • (2005) Sci Tot Environ , vol.338 , pp. 3-14
    • Johnson, D.B.1    Hallberg, K.B.2
  • 29
    • 0038443200 scopus 로고    scopus 로고
    • Novel thermo-acidophilic bacteria isolated from geothermal sites in Yellowstone National Park: Physiological and phylogenetic characteristics
    • Johnson DB, Okibe N, Roberto FF. (2003). Novel thermo-acidophilic bacteria isolated from geothermal sites in Yellowstone National Park: physiological and phylogenetic characteristics. Arch Microbiol 180: 60-68.
    • (2003) Arch Microbiol , vol.180 , pp. 60-68
    • Johnson, D.B.1    Okibe, N.2    Roberto, F.F.3
  • 30
    • 0002669311 scopus 로고    scopus 로고
    • Heterotrophic acidophiles and their roles in the bioleaching of sulfide minerals
    • Rawlings DE ed, RG Landes Co, New York, NY, pp
    • Johnson DB, Roberto FF. (1997). Heterotrophic acidophiles and their roles in the bioleaching of sulfide minerals. In: Rawlings DE (ed). Biomining: Theory, Microbes and Industrial Processes. RG Landes Co.: New York, NY, pp 259-279.
    • (1997) Biomining: Theory, Microbes and Industrial Processes , pp. 259-279
    • Johnson, D.B.1    Roberto, F.F.2
  • 31
    • 0032926803 scopus 로고    scopus 로고
    • Relative contributions of abiotic and biological factors in Fe(II) oxidation in mine drainage
    • Kirby CS, Thomas HM, Southam G, Donald R. (1999). Relative contributions of abiotic and biological factors in Fe(II) oxidation in mine drainage. Appl Geochem 14: 511-530.
    • (1999) Appl Geochem , vol.14 , pp. 511-530
    • Kirby, C.S.1    Thomas, H.M.2    Southam, G.3    Donald, R.4
  • 32
    • 0001857117 scopus 로고
    • 16S/23S rRNA sequencing
    • Stackebrandt E, Goodfellow M eds, Wiley: New York, NY, pp
    • Lane DJ. (1991). 16S/23S rRNA sequencing. In: Stackebrandt E, Goodfellow M (eds). Nucleic Acid Techniques in Bacterial Systematics. Wiley: New York, NY, pp 115-175.
    • (1991) Nucleic Acid Techniques in Bacterial Systematics , pp. 115-175
    • Lane, D.J.1
  • 34
    • 0000816704 scopus 로고
    • Rapid assay for microbially reducible ferric iron in aquatic sediments
    • Lovley DR, Phillips EJP. (1987). Rapid assay for microbially reducible ferric iron in aquatic sediments. Appl Environ Microbiol 53: 1536-1540.
    • (1987) Appl Environ Microbiol , vol.53 , pp. 1536-1540
    • Lovley, D.R.1    Phillips, E.J.P.2
  • 35
    • 0038336232 scopus 로고    scopus 로고
    • Bacterial formation of Tooeleite and mixed arsenic(III) or arsenic(V)-iron(III) gels in the Carnoulès acid mine drainage, France. A XANES, XRD, and SEM study
    • Morin G, Juillot F, Casiot C, Bruneel O, Personné J-C, Elbaz-Poulichet F et al. (2003). Bacterial formation of Tooeleite and mixed arsenic(III) or arsenic(V)-iron(III) gels in the Carnoulès acid mine drainage, France. A XANES, XRD, and SEM study Environ Sci Technol 37: 1705-1711.
    • (2003) Environ Sci Technol , vol.37 , pp. 1705-1711
    • Morin, G.1    Juillot, F.2    Casiot, C.3    Bruneel, O.4    Personné, J.-C.5    Elbaz-Poulichet, F.6
  • 37
    • 32244439191 scopus 로고    scopus 로고
    • Assessment of the microbial community in a constructed wetland that receives acid coal mine drainage
    • Nicormat D, Dick WA, Tuovinen OH. (2006a). Assessment of the microbial community in a constructed wetland that receives acid coal mine drainage. Microbial Ecol 51: 83-89.
    • (2006) Microbial Ecol , vol.51 , pp. 83-89
    • Nicormat, D.1    Dick, W.A.2    Tuovinen, O.H.3
  • 38
    • 33746388900 scopus 로고    scopus 로고
    • Microbial populations identified by fluorescence in situ hybridization in a constructed wetland treating acid mine drainage
    • Nicormat D, Dick WA, Tuovinen OH. (2006b). Microbial populations identified by fluorescence in situ hybridization in a constructed wetland treating acid mine drainage. J Environ Qual 35: 1329-1337.
    • (2006) J Environ Qual , vol.35 , pp. 1329-1337
    • Nicormat, D.1    Dick, W.A.2    Tuovinen, O.H.3
  • 39
    • 0005223290 scopus 로고
    • Acid mine drainage treatment with rotating biological contactors
    • Olem H, Unz RF. (1977). Acid mine drainage treatment with rotating biological contactors. Biotechnol Bioeng 19: 1475-1491.
    • (1977) Biotechnol Bioeng , vol.19 , pp. 1475-1491
    • Olem, H.1    Unz, R.F.2
  • 41
    • 0003301070 scopus 로고    scopus 로고
    • Pennsylvania Department of Environmental Protection PA-DEP, PA-DEP publication, Bureau of Abandoned Mine Reclamation, Harrisburg, PA
    • Pennsylvania Department of Environmental Protection (PA-DEP) (1999). The Science of Acid Mine Drainage and Passive Treatment. PA-DEP publication, Bureau of Abandoned Mine Reclamation, Harrisburg, PA.
    • (1999) The Science of Acid Mine Drainage and Passive Treatment
  • 43
    • 55549147965 scopus 로고    scopus 로고
    • Rose AW, Bisko D, Daniel A, Bower MA. (2004). An 'autopsy' of the failed Tangascootak #1 vertical flow pond. Proceedings of the National Meeting of the American Society of Mining and Reclamation and the 25th West Virginia Surface Mine Drainage Task Force. Published by ASMR, Lexington KY.
    • Rose AW, Bisko D, Daniel A, Bower MA. (2004). An 'autopsy' of the failed Tangascootak #1 vertical flow pond. Proceedings of the National Meeting of the American Society of Mining and Reclamation and the 25th West Virginia Surface Mine Drainage Task Force. Published by ASMR, Lexington KY.
  • 44
    • 0034890786 scopus 로고    scopus 로고
    • Bacterial diversity in soil samples from two uranium waste piles as determined by rep-APD, RISA, and 16S rDNA retrieval
    • Selenska-Pobell S, Kampf G, Flemming K, Radeva G, Satchanska G. (2001). Bacterial diversity in soil samples from two uranium waste piles as determined by rep-APD, RISA, and 16S rDNA retrieval. Antonie van Leeuwenhoek 79: 149-161.
    • (2001) Antonie van Leeuwenhoek , vol.79 , pp. 149-161
    • Selenska-Pobell, S.1    Kampf, G.2    Flemming, K.3    Radeva, G.4    Satchanska, G.5
  • 45
    • 20644441018 scopus 로고    scopus 로고
    • Microbial manganese oxidation in the lower Mississippi River: Methods and evidence
    • Shiller AM, Stephens TH. (2005). Microbial manganese oxidation in the lower Mississippi River: methods and evidence. Geomicrobiol J 22: 117-125.
    • (2005) Geomicrobiol J , vol.22 , pp. 117-125
    • Shiller, A.M.1    Stephens, T.H.2
  • 46
    • 0003856480 scopus 로고    scopus 로고
    • Wiley-Interscience, Hoboken, New Jersey, USA
    • Stumm W, Morgan JJ. (1996). Aquatic Chemistry. Wiley-Interscience, Hoboken, New Jersey, USA.
    • (1996) Aquatic Chemistry
    • Stumm, W.1    Morgan, J.J.2
  • 47
    • 49549150346 scopus 로고
    • Spectrophotometric determination of iron(II) with 1,10-phenanthroline in the presence of large amounts of iron(III)
    • Tamura H, Goto K, Yotsuynagi T, Nagayama M. (1974). Spectrophotometric determination of iron(II) with 1,10-phenanthroline in the presence of large amounts of iron(III). Talanta 21: 314-318.
    • (1974) Talanta , vol.21 , pp. 314-318
    • Tamura, H.1    Goto, K.2    Yotsuynagi, T.3    Nagayama, M.4
  • 48
    • 0029416266 scopus 로고
    • Iron and manganese release in coal mine drainage wetland microcosms
    • Tarutis Jr WJ, Unz RF. (1995). Iron and manganese release in coal mine drainage wetland microcosms. Wat Sci Technol 32: 187-192.
    • (1995) Wat Sci Technol , vol.32 , pp. 187-192
    • Tarutis Jr, W.J.1    Unz, R.F.2
  • 49
    • 0026466101 scopus 로고
    • Behavior of sedimentary Fe and Mn in a natural wetland receiving acidic mine drainage, Pennsylvania USA
    • Tarutis Jr WJ, Unz RF, Brooks RP. (1992). Behavior of sedimentary Fe and Mn in a natural wetland receiving acidic mine drainage, Pennsylvania USA. Appl Geochem 7: 77-85.
    • (1992) Appl Geochem , vol.7 , pp. 77-85
    • Tarutis Jr, W.J.1    Unz, R.F.2    Brooks, R.P.3
  • 50
    • 0026289851 scopus 로고
    • Manganese(II) oxidation in the suboxic zone of the Black Sea
    • Tebo BM. (1991). Manganese(II) oxidation in the suboxic zone of the Black Sea. Deep-Sea Res 38: S883-S905.
    • (1991) Deep-Sea Res , vol.38
    • Tebo, B.M.1
  • 51
    • 0027968068 scopus 로고
    • CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice
    • Thompson JD, Higgins DG, Gibson TJ. (1994). CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, positions-specific gap penalties and weight matrix choice. Nucl Acids Res 22: 4673-4680.
    • (1994) Nucl Acids Res , vol.22 , pp. 4673-4680
    • Thompson, J.D.1    Higgins, D.G.2    Gibson, T.J.3
  • 52
    • 0003339203 scopus 로고
    • Microbiological ferrous iron oxidation in acid mine drainage
    • Unz RF, Olem H, Wichlacz BS. (1979). Microbiological ferrous iron oxidation in acid mine drainage. Process Biochem 14: 2-6, 28.
    • (1979) Process Biochem , vol.14 , Issue.2-6 , pp. 28
    • Unz, R.F.1    Olem, H.2    Wichlacz, B.S.3
  • 53
    • 0027643251 scopus 로고
    • Alkalinity generation by iron(III) reduction versus sulfate reduction in wetlands constructed for acid mine drainage treatment
    • Vile MA, Wieder RK. (1993). Alkalinity generation by iron(III) reduction versus sulfate reduction in wetlands constructed for acid mine drainage treatment. Wat Air Soil Pollut 69: 425-441.
    • (1993) Wat Air Soil Pollut , vol.69 , pp. 425-441
    • Vile, M.A.1    Wieder, R.K.2
  • 54
    • 34548293679 scopus 로고    scopus 로고
    • Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy
    • Wang Q, Garrity GM, Tiedje JM, Cole JR. (2007). Naïve Bayesian classifier for rapid assignment of rRNA sequences into the new bacterial taxonomy. Appl Environ Microbiol 73: 5261-5267.
    • (2007) Appl Environ Microbiol , vol.73 , pp. 5261-5267
    • Wang, Q.1    Garrity, G.M.2    Tiedje, J.M.3    Cole, J.R.4


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.