Genetic diversity in Brazilian sweet potato (Ipomoea batatas (L.) Lam., Solanales, Convolvulaceae) landraces assessed with microsatellite markers

Genetics and Molecular Biology

Volumn 31, Issue 3, 2008, Pages 725-733

  Veasey, Elizabeth Ann ^a   Borges, Aline ^a   Rosa, Mariana Silva ^a   Queiroz Silva, Jurema R ^a   Bressan, Eduardo de Andrade ^a   Peroni, Nivaldo ^b  

^a UNIVERSITY OF SÃO PAULO   (Brazil)

^b UNIVERSITY OF CAMPINAS   (Brazil)

Author keywords

Genetic variability; Landraces; SSR; Traditional agriculture; Vale do Ribeira

Indexed keywords

POLYACRYLAMIDE GEL; SILVER NITRATE;

ARTICLE; BRAZIL; CONTROLLED STUDY; GENE LOCUS; GENETIC VARIABILITY; GENOME ANALYSIS; GENOTYPE; LANDRACE; MATING SYSTEM; MICROSATELLITE MARKER; MOLECULAR EVOLUTION; NONHUMAN; OUTCROSSING; POLYMORPHIC LOCUS; SIMPLE SEQUENCE REPEAT; SPECIES COMPARISON; SPECIES CULTIVATION; SPECIES DIFFERENCE; STAINING; SWEET POTATO;

CONVOLVULACEAE; IPOMOEA BATATAS; SOLANALES;

EID: 55349118115     PISSN: 14154757     EISSN: 16784685     Source Type: Journal    
DOI: 10.1590/S1415-47572008000400020     Document Type: Article

References (45)

1. Austin DF (1988) The taxonomy, evolution and genetic diversity of sweetpotatoes and related wild species. In: Gregory P (ed) Exploration, Maintenance and Utilization of Sweet Potato Genetic Resources. International Potato Center, Lima, pp 27-60.
2. Bassam BJ, Caetano-Anolles G and Gresshoff PM (1991) Fast and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 196:80-83.
3. Boster JS (1985) Selection for perceptual distinctiveness: Evidence from Aguaruna cultivars of Manihot esculenta. Econ Bot 39:310-325.
4. Bressan EA, Veasey EA, Peroni N, Felipim AP and Santos KMP (2005) Collecting yam (Dioscorea spp.) and sweet potato (Ipomoea batatas) germplasm in traditional agriculture small-holdings in the Vale do Ribeira, São Paulo, Brazil. Plant Genet Resour Newsl 144:8-13.
5. Brush SB (2000) The issues of in situ conservation of crop genetic resources. In: Brush SB (ed) Genes in the Field: On-Farm Conservation of Crop Diversity. 1st ed. IPGRI/IDRC/Lewis Publishers, Rome, pp 3-26.
6. Buteler MI, Jarret RL and Labonte DR (1999) Sequence characterization of microsatellites in diploid and polyploid Ipomoea. Theor Appl Genet 99:123-132.
7. Cabral BLR, Souza JAB, Ando A, Veasey EA and Cardoso EMR (2002) Isoenzymatic variability of cassava accessions from different regions in Brazil. Sci Agric 59:521-527.
8. Cleveland DA, Soleri D and Smith SE (1994) Do folk crop varieties have a role in sustainable agriculture? BioScience 44:740-751.
9. Colombo C, Second G and Charrier A (2000) Diversity within American cassava germ plasm based on RAPD markers. Genet Mol Biol 23:189-199.
10. Diaz J, Schmiediche P and Austin DF (1996) Polygon of crossability between eleven species of Ipomoea: Section Batatas (Convolvulaceae). Euphytica 88:189-200.
11. Doyle JJ and Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochem Bull 191:11-15.
12. Fajardo DS, La Bonte DR and Jarret RL (2002) Identifying and selecting for genetic diversity in Papua New Guinea sweet-potato Ipomoea batatas (L.) Lam. germplasm collected as botanical seed. Genet Resour Crop Evol 49:463-470.
13. Faraldo MIF, Silva RM and Martins PS (2000) Variabilidade genética de etnovariedades de mandioca em regiões geográficas do Brasil. Sci Agric 57:499-505 (Abstract in English).
14. Gichuru V, Aritua V, Lubega GW, Edema R, Adipula E and Rubaihayo PR (2006) A preliminary analysis of diversity among East African sweet potato landraces using morphological and simple sequence repeats (SSR) markers. Acta Hortic 703:159-164.
15. Hernandez TP, Hernandez T and Miller JC (1964) Frequency of somatic mutations in several sweet potato varieties. Proc Am Soc Hortic Sci 85:430-434.
16. Hogan DJ, Carmo RL, Alves HPF and Rodrigues IA (1999) Sustentabilidade no Vale do Ribeira (SP): Conservação ambiental e melhoria das condições de vida da populaçõ. Ambient Soc 34:151-175 (Abstract in English).
17. Hu J, Nakatani M, Lalusin AG, Kuranouchi T and Fujimura T (2003) Genetic analysis of sweet potato and wild relatives using inter-simple sequence repeats (ISSRs). Breed Sci 53:297-304.
18. Hu J, Nakatani M, Mizuno K and Fujimura T (2004) Development and characterization of microsatellite markers in sweetpotato. Breed Sci 54:177-188.
19. Huang JC and Sun M (2000) Genetic diversity and relationship of sweetpotato and its wild relatives in Ipomoea series batatas (Convolvulaccae) as revealed by inter-simple sequence (ISSR) and restriction analysis of chloropalst DNA. Theor Appl Genet 100:1050-1060.
20. Hwang SY, Tseng YT and Lo HF (2002) Application of simple sequence repeats in determining the genetics relationships of cultivars used in sweet potato polycross breeding in Taiwan. Sci Hortic 93:215-224.
21. Fundação Instituto Brasileiro de Geografia e Estatística (1999) Anuário Estatístico do Brasil. IBGE, Rio de Janeiro.
22. Jarret RL and Bowen N (1994) Simple sequence repeats (SSRs) for sweetpotato germplasm characterization. Plant Genet Resour Newsl 100:9-11.
23. Kovach WL (1999) MVSP: A Multivariate Statistical Package for Windows. User's Manual, v. 3.1. Kovach Computing Services, Pentraeth, 133 pp.
24. Mantel N (1967) The detection of disease clustering and a generalized regression approach. Cancer Res 27:209-220.
25. Martin FW (1965) Incompatibility in the sweetpotato, a review. Econ Bot 19:406-415.
26. Martins PS (1994) Biodiversity and agriculture: Patterns of domestication of Brazilian native plant species. An Acad Bras Cienc 66:219-226.
27. Martins PS (2001) Dinâmica evolutiva em roças de caboclos amazônicos. In: Vieira ICG, Silva JMC, Oren DC and D'Incao MA (eds) Diversidade Biológica e Cultural na Amazônia. Museu. Paraense Emílio Goeldi, Belém, pp 369-384 (Abstract in English).
28. Nazarea VD (1998) Cultural Memory and Biodiversity. The University of Arizona Press, Tucson, 189 pp.
29. Ozias-Akins P and Jarret RL (1994) Nuclear DNA content and ploidy levels in the genus Ipomoea. J Am Soc Hortic Sci 119:110-115.
30. Peroni N (2007) Manejo e domesticação de mandioca por caiçaras da Mata Atlântica e ribeirinhos da Amazônia. In: Boef WS, Thijssen MH, Ogliari JB and Sthapit BR (eds) Biodiversidade e Agricultores: Fortalecendo o manejo comunitário. v. 1. L&PM, Porto Alegre, pp 234-242.
31. Peroni N and Hanazaki N (2002) Current and lost diversity of cultivated varieties, especially cassava, under swidden cultivation systems in the Brazilian Atlantic Forest. Agric Ecosyst Environ 92:171-183.
32. Peroni N, Kageyama YP and Begossi A (2007) Molecular differentiation, diversity, and folk classification of "sweet"' and "bitter" cassava (Manihot esculenta) in Caiçara and Caboclo management systems (Brazil). Genet Resour Crop Evol 54:1333-1349.
33. Prakash CS, He G and Jarret RL (1996) DNA marker-based study of genetic relatedness in United States sweetpotato cultivars. J Am Soc Hortic Sci 121:1059-1062.
34. Quiroz CF, Brush SB, Douches DS, Zimmerer KS and Huestis G (1990) Biochemical and folk assessment of variability of Andean cultivated potatoes. Econ Bot 44:254-266.
35. Rohlf FJ (1992) NTSYS-pc: Numerical taxonomy and multi-variate analysis system. v. 1.70. Stony Brook, New York.
36. Sambatti JBM, Ando A and Martins PS (2000) Distribuição das diversidades isoenzimática e morfológica da mandioca na agricultura autóctone de Ubatuba. Sci Agric 57:75-80 (Abstract in English).
37. Sambatti JBM, Martins PS and Ando A (2001) Folk taxonomy and evolutionary dynamics of cassava: A case study in Ubatuba-Brazil. Econ Bot 55:93-105.
38. Soleri D and Smith SE (1995) Morphological and phenological comparisons of two hopi maize varieties conserved in situ and ex situ. Econ Bot 49:56-77.
39. ter Braak CJF and Smilauer P (2002) CANOCO Reference Manual and CanocoDraw for Windows User's Guide: Software for Canonical Community Ordination, v. 4.5. Microcomputer Power, New York, 500 pp.
40. Thompson PG, Hong LL, Ukoskit K and Zhu S (1997) Genetic linkage of randomly amplified polymorphic DNA (RAPD) markers in sweetpotato. J Am Soc Hortic Sci 122:79-82.
41. Veasey EA, Silva JRQ, Borges A, Bressan EA and Peroni N (2007) Phenology and morphological diversity of sweet potato (Ipomoea batatas) landraces of the Vale do Ribeira. Sci Agric 64:416-427.
42. Zacarias AM, Botha AM, Labuschagne MT and Benesi IRM (2004) Characterization and genetic distance analysis of cassava (Manihot esculenta Crantz) germplasm from Mozambique using RAPD fingerprinting. Euphytica 138:49-53.
43. Zhang DP, Carbajulca D, Ojeda L, Rossel G, Milla S, Herrera C and Ghislain M (2001) Microsatellite analysis of genetic diversity in sweetpotato varieties from Latin America. In: International Potato Centre Program Report 1999-2000, International Potato Centre, Lima, pp 295-301.
44. Zhang DP, Cervantes J, Huamin Z, Carey E and Ghislain M (2000) Assessing genetic diversity of sweet potato (Ipomoea batatas (L.) Lam.) cultivars from tropical America using AFLP. Genet Resour Crop Evol 47:659-665.
45. Zhang DP, Rossel G, Kriegner A and Hijmans R (2004) AFLP assessment of diversity in sweetpotato from Latin America and the Pacific region: Its implications on the dispersal of the crop. Genet Resour Crop Evol 51:115-120.