Molecular differentiation, diversity, and folk classification of "sweet" and "bitter" cassava (Manihot esculenta) in Caiçara and Caboclo management systems (Brazil)

Genetic Resources and Crop Evolution

Volumn 54, Issue 6, 2007, Pages 1333-1349

  Peroni, Nivaldo ^a   Kageyama, Paulo Yoshio ^b   Begossi, Alpina ^a  

^a UNIVERSITY OF CAMPINAS   (Brazil)

^b UNIVERSITY OF SÃO PAULO   (Brazil)

Author keywords

Atlantic Forest; Bitter cassava; Caboclos; Cai aras; Manihot esculenta Crantz; Sweet cassava

Indexed keywords

ETHNOBOTANY; GENETIC DIFFERENTIATION; GENETIC STRUCTURE; MANAGEMENT PRACTICE; POPULATION GENETICS; SHRUB; VEGETABLE;

ATLANTIC FOREST; BRAZIL; RIO NEGRO [SOUTH AMERICA]; SOUTH AMERICA;

MANIHOT ESCULENTA;

EID: 34447530831     PISSN: 09259864     EISSN: None     Source Type: Journal    
DOI: 10.1007/s10722-006-9116-2     Document Type: Article

References (78)

1. Allem AC (1994) The origin of Manihot esculenta Crantz (Euphorbiaceae). Genet Resour Crop Evol 41:133-150
2. Allem AC (2002) The origins and taxonomy of cassava. In: Hillocks RJ, Thresh JM, Bellotti AC (eds) Cassava: biology, production and utilization. CAB International, Wallingford, pp 1-16
3. Bailey K (1978) Methods of social research. Free Press, New York
4. Balée W (1992) People of the Fallow: a historical ecology of foraging in Lowland South America. In: Redford KH, Padoch C (eds) Conservation of neotropical forests. Columbia University Press, New York, pp 35-57
5. Balée W (1994) Footprints of the forest. Columbia University Press, New York
6. Bassam BJ, Caetano-Anolles G, Gressgoff PM (1991) Fist and sensitive silver staining of DNA in polyacrylamide gels. Anal Biochem 196:80-83
7. Becker IIB (1991) Alimentação dos Índios Kaingang do Rio Grande do Sul. Rev Arqueo 6:106-118
8. Begossi A (1998) Resilience and neotraditional populations: the caiçaras of the Atlantic Forest coast and caboclos of the Amazon (Brazil). In: Folke C, Berkes F (eds) Linking ecological and social systems: management practices and social mechanisms for building resilience. Cambridge University Press, Cambridge, pp 129-157
9. Belkhir K, Borsa P, Chikhi L, Raufaste N, Bonhomme F (2003) GENETIX 4.04, logiciel sous WindowsTM pour la génétique des populations. Laboratoire Génome, Populations; Interactions CNRS UMR 5000, Université de Montpellier II, Montpellier (France)
10. Benzécri JP (1973) L'analyse des données. II L'analyse des correspondances. Bordas, Paris
11. Boster JS (1985) Selection for perceptual distinctiveness: evidence from Aguaruna cultivars of Manihot esculenta. Econ Bot 39:310-325
12. Brochado JJP (1977) Alimentação na floresta tropical. Instituto de Fiolosofia e Ciências Humanas, UFRS, Porto Alegre
13. Chavarriaga-Aguirre P, Maya MM, Bonierbale MV, Kresolich S, Fregene MA, Toehne J, Kochert G (1998) Microsatellites in cassava (Manihot esculenta Crantz): discovery, inheritance and variability. Theor Appl Genet 97:493-501
14. Cochrane TT, Sánchez PA (1982) Land resources, soils and their management in the Amazon region: a state of knowledge report. In: Hecht SB (ed) Amazonia agriculture and land use research. University of Missouri, Columbia, pp 138-197
15. Dean W (1995) With broadax and firebrand: the destruction of the Brazilian Atlantic Forest. University of California Press, Berkeley
16. Dellaporta SL, Wood J, Hicks JR (1983) A plant DNA minipreparation: version II. Plant Mol Biol Repr 1:19
17. Dias-Junior OF (1993) As origens da horticultura no Brasil. Rev Arqueo Am 7:1-52
18. Dice LR (1945) Measures of the amount of ecologic association between species. Ecology 26:297-302
19. Diegues AC (1994) O Mito Moderno da Natureza Intocada. NUPAUB/University of São Paulo, São Paulo
20. Dufour D (1988) Cyanide content of cassava (Manihot esculenta, Euphorbiaceae) cultivars used by Tukanoan Indians in northwest Amazonia. Econ Bot 42:255-266
21. Dufour DL (1993) The bitter is sweet: a case study of bitter cassava (Manihot esculenta) use in Amazonia. In: Hladik CM, Hladik A, Linares OF, Pagezy H, Hadley M (eds) Tropical forest, people and food: biocultural interations and applications to development, man and the biosphere series, vol 13. UNESCO, Paris, pp 575-588
22. Elias M, Mühlen GS, Mckey D, Roa AC, Tohme J (2004) Genetic diversity of traditional South American landraces of cassava (Manihot esculenta Crantz): an analysis using microsatellites. Econ Bot 58:242-256
23. Elias M, Penet L, Vindry P, McKey D, Robert T (2001) Unmanaged sexual reproduction and the dynamics of genetic diversity of a vegetatively propagated crop plant, cassava (Manihot esculenta Crantz), in a traditional farming system. Mol Ecol 10:1895-1907
24. Emperaire L, Pinton F, Second G (1998) Gestion dynamique de la diversité variétale du manioc en Amazonie du nord-Ouest. Nat Sci Soc 6:27-42
25. Escofier B, Pagès J (1990) Analyses factorielles simples et multiples. Dunod, Paris
26. Felipim AP, Queda O (2005) O sistema agrícola Guarani Mbyá e seus cultivares de milho: um estudo de caso. Interciencia 30:143-150
27. Goodman SJ (1997) RST Calc: a collection of computer programs for calculating estimates of genetic differentiation from microsatelite data and determining their significance. Mol Ecol 6:881-885
28. Greenacre HJ (1984) Theory and applications of correspondence analysis. Academic Press, London
29. Grenand F (1993) Bitter manioc in the lowlands of tropical America: from myth to commercialization. In: Hladik CM, Hladik A, Linares OF, Pagezy H, Hadley M (eds) Tropical forest, people and food: biocultural interations and applications to development, man and the biosphere series, vol 13. UNESCO, Paris, pp 447-461
30. Guapindaia V (2001) Encountering the ancestors: the Maracá Urns. In: McEwan C, Barreto C, Neves EG (eds) Unknown Amazon: culture in nature in ancient Brazil. British Museum Press, London, pp 156-173
31. Hanazaki N (2001) Ecologia de caiçaras: uso de recursos e dieta. Ph.D. Thesis, Universidade Estadual de Campinas, UNICAMP, Campinas
32. Hanazaki N, Castro F, Oliveira VG, Peroni N (2006) Between the sea and the land: the livelihood of estuarine people in southeastern Brazil. Ambiente e Sociedade 9 (in press)
33. Harlan JR (1992) Crops and man, 2nd edn. American Society of Agronomy, Crop Science Society of America, Madison
34. Hernani LC, Sakai E, Ishimura I, Lepsch IF (1987) Influência de métodos de limpeza de terreno sob floresta secundária em latossolo amarelo do Vale do Ribeira, SP. I. Dinâmica de atributos químicos, físicos e produção de milho. Rev Bras Cienc Solo 11:205-213
35. Hershey CH (1994) Manihot genetic diversity. International network for cassava genetic resources. International Crop Network Series, IPGRI 10, pp 111-134
36. Hueck K (1972) As Florestas da América do Sul. Editora Universidade de Brasília, Brasília
37. Lewis PO, Zaykin D (2001) Genetic data analysis: computer program for the analysis of allelic data. Version 1.0 (d16c). Software
38. Manly BFJ (1994) Multivariate statistical methods: a primer, 2nd edn. Chapman & Hall, London
39. Marcgrave J (1942) História natural do Brasil. "Historia natvralis Brasiliae. Lvgdvn. Batavorvim, apud F. Hackium, et Amstelodam: apud L. Elzevirium, 1648". Translation, José Procopio de Magalhães, Fundação da Imprensa Ofícial do Estado de São Paulo, São Paulo
40. Martins PS (2001) Dinâmica evolutiva em roças de caboclos amazônicos. In: Vieira ICG, Silva JMC, Oren DC, D'incao MA (eds) Diversidade biológica e cultural da Amazônia, 1st ed. Museu Paraense Emílio Goeldi, Belém, pp 369-384
41. Mba REC, Stephenson P, Edwards K, Mlezer S, Mkumbira J, Gullberg U, Apel K, Gale M, Tohme J, Fregene M (2001) Simple sequence repeat (SSR) markers survey of the cassava (Manihot esculenta Crantz) genome: towards an SSR-based molecular genetic map of cassava. Theor Appl Genet 102:21-31
42. McKey D, Beckerman S (1993) Chemical ecology, plant evolution and tradictional cassava cultivation systems. In: Hladik CM, Hladik A, Linares OF, Pagezy H, Hadley M (eds) Tropical forest, people and food: biocultural interations and applications to development, man and the Biosphere series, vol 13. UNESCO, Paris, pp 83-112
43. McKey D, Emperaire L, Elias M, Pinton F, Robert T, Demouliére S, Rival L (2001) Gestions locales et dynamiques régionales de la diversité variétale du manioc en Amazonie. Genet Sel Evol 33:465-490
44. Mkumbira J, Chiwona-Karltun L, Lagercrantz U, Mahungu NM, Saka J, Mhone A, Bokanga M, Brimer L, Gullberg U, Roling H (2003) Classification of cassava into "bitter" and "cool" in Malawi: from farmers? perception to characterization by molecular markers. Euphytica 132:7-22
45. Mühlen GS (1999) Evaluation of the genetic diversity of ethnovarieties of cassava (Manihot esculenta Crantz) using DNA markers: RAPD, AFLP and Microsatellite. Ph.D. Thesis, University of São Paulo, Piracicaba
46. Mussolini G (1953) Aspectos da cultura e da vida social do litoral brasileiro. Rev Antro 1:81-97
47. Nei M (1978) Estimation of average heterozygosity and genetic distance from a small number of individuals. Genetics 89:583-590
48. Nei M (1987) Molecular Evolutionary Genetics. Columbia University Press, New York, NY, USA
49. Nei M, Chesser RK (1983) Estimation of fixation indices and gene diversities. Ann Hum Genet 47:253-259
50. Neves EG, Petersen JB, Bartone RN, da Silva CA (2003) Historical and socio-cultural origins of Amazonian dark earths. In: Lehmann J, Kern DC, Glaser B, Woods WI (eds) Amazonian dark earths: origin, properties, management. Kluwer Academic Publishers, Dordrecht, pp 29-49
51. Oksanen J, Kindt R, Legendre P, O'Hara RB (2005) vegan: community ecology package, version 1.7-97. http://www.cran.r-project.org/
52. Oliveira AA, Mori SA (1999) A Central Amazonian terra firme forest. I. High tree species richness on poor soils. Biodiver Conserv 8:1219-1244
53. Olsen KM, Schall BA (1999) Evidence on the origin of cassava: phylogeography of Manihot esculenta. Proc Nat Acad Sci 96:5586-5591
54. Olsen KM, Schall BA (2001) Microsatellite variation in cassava (Manihot Esculenta, Euphorbiaceae) and its wild relatives: further evidence for a southern Amazonian origin of domestication. Am J Bot 88:131-142
55. Peroni N (1998) Folk taxonomy and intra specific diversity of cassava (Manihot esculenta Crantz) in the swidden traditional plots in Atlantic Forest areas at the southeast of São Paulo State. Master thesis, University of São Paulo, Piracicaba
56. Peroni N (2004) Ecology and Genetics of cassava in the swidden cultivation on São Paulo south coast: a spatial and temporal analysis. Ph.D. Thesis, Campinas State University, UNICAMP, Campinas
57. Peroni N, Hanazaki N (2002) Current and lost diversity of cultivated varieties, especially cassava, under swidden cultivation systems in the Brazilian Atlantic Forest. Agr Ecosyst Environ 92:171-183
58. Peroni N, Martins PS (2000) Influência da dinâmica agrícola itinerante na geração de diversidade de etnovariedades cultivadas vegetativamente. Interciencia 25:22-29
59. Peroni N, Martins PS, Ando A (1999) Diversidade inter e intra-específica e uso de análise multivariada para morfologia de mandioca (Manihot esculenta Crantz): um estudo de caso. Sci Agric 56:587-595
60. Pinton F, Emperaire L (1999) Pratiques agricoles et commerce du manioc sur un front de colonisation (Amazonie brésilienne). In: Bahuchet S, Bley D, Pagezy H, Vernazza-Licht N (eds) L'Homme et la forêt tropicale. Travaux de la Société d'Ecologie Humaine, Marseille, pp 347-362
61. Piso G (1948) História natural do Brasil ilustrada. Companhia Editora Nacional, São Paulo
62. R Development Core Team (2005) R: a language and environment for statistical computing. R Foundation for Statistical Computing, Vienna, Austria, ISBN 3-900051-07-0, http://www.R-project.org
63. Renvoize BS (1972) The area of origin of Manihot esculenta Crantz as crop plant-a review of the evidence. Econ Bot 26:352-360
64. Rogers DJ, Appan SG (1973) Manihot and manihotoides (Euphorbiaceae). A computer-assisted study. Monograph. Flora Neotropica, vol 13. Hafner Press, New York
65. Salick J, Cellinese N, Knapp S (1997) Indigenous diversity of cassava: generation, maintenance, use and loss among the Amuesha, Peruvian upper Amazon. Econ Bot 51:7-17
66. Sambatti JBM, Martins PS, Ando A (2001) Folk taxonomy and evolutionary dynamics of cassava: a case study in Ubatuba, Brazil. Econ Bot 55:93-105
67. Scatamacchia MCM (1995) Horticultores ceramistas da costa brasiliera. Rev Arqueo Am 8:117-158
68. Schaffer-Novelli Y, Mesquita HSL, Cintròn-Molera G (1990) The Cananéia Lagoon Estuarine System, São Paulo, Brazil. Estuaries 13:193-203
69. Schmidt CB (1958) Lavoura caiçara. Documentário da vida rural, vol 14. Serviço de Informação Agrícola, Rio de Janeiro
70. Sievert AK (2000) Root and tuber resources: experimental plant processing and resulting microwear on chipped stone tools. In: Anderson PC (ed) Prehistory of agriculture: new experimental and ethnographic approaches, Monograph 40. Institute of Archaeology, University of California, Los Angeles
71. Silva RM, Bandel G, Martins PS (2003) Mating system in an experimental garden composed of cassava (Manihot esculenta Crantz) ethnovarieties. Euphytica 134:127-135
72. Simões MF (1971) O Museu Goeldi e a Arqueologia da Bacia Amazônica. Ant Cult Amaz 6:173-189
73. Sneath PHA, Sokal RR (1973) Numerical taxonomy. W.H. Freeman, San Francisco
74. Sombroek WG (1984) Soils of the Amazon region. In: Sioli H (ed) The Amazon: limnology and landscape ecology of a mighty tropical river and its basin. Dr. W. Junk Publishers, Dordrecht, pp 521-535
75. Spix JB, Martius CFP (1981) Viagem pelo Brasil (1817-1820), 4 ed., vol 3. Itatiaia, São Paulo
76. Weir BS (1996) Genetic Data Analysis II: methods for discrete population genetic data. Sinauer Associates, Inc. Publishers, Sunderland, Massachusetts
77. Wilson MW, Dufour DL (2002) Why "bitter" cassava? Productivity of "bitter" and "sweet" cassava in Tukanoan Indian settlement in the Northwest Amazon. Econ Bot 56:49-57
78. Wilson WM (2003) Cassava (Manihot esculenta Crantz), cyanogenic potential, and predation in Northwestern Amazonia: The Tukanoan perspective. Hum Ecol 31:403-416