-
1
-
-
11144287593
-
An overview of the BlueGene/L supercomputer
-
THE BLUEGENE/L TEAM, Baltimore, MD
-
THE BLUEGENE/L TEAM, An overview of the BlueGene/L supercomputer, in Proceedings of SC2002, Baltimore, MD, 2002.
-
(2002)
Proceedings of SC2002
-
-
-
2
-
-
0037038372
-
Absolute comparison of simulated and experimental protein-folding dynamics
-
C. D. SNOW, H. NGUYEN, V. S. PANDE, AND M. GRUEBELE, Absolute comparison of simulated and experimental protein-folding dynamics, Nature, 420 (2002), pp. 102-106.
-
(2002)
Nature
, vol.420
, pp. 102-106
-
-
SNOW, C.D.1
NGUYEN, H.2
PANDE, V.S.3
GRUEBELE, M.4
-
3
-
-
84877051133
-
Protein explorer: A petaflops special-purpose computer system for molecular dynamics simulations
-
Phoenix, AZ
-
M. TAIJI, T. NARUMI, Y. OHNO, N. FUTATSUGI, A. SUENAGA, N. TAKADA, AND A. KONAGAYA, Protein explorer: A petaflops special-purpose computer system for molecular dynamics simulations, in Proceedings of SC2003, Phoenix, AZ, 2003.
-
(2003)
Proceedings of SC2003
-
-
TAIJI, M.1
NARUMI, T.2
OHNO, Y.3
FUTATSUGI, N.4
SUENAGA, A.5
TAKADA, N.6
KONAGAYA, A.7
-
4
-
-
38349098051
-
A high-speed special-purpose computer for molecular dynamics simulations: MDGRAPE-3
-
Proceedings of NIC Workshop 2006, From Computational Biophysics to Systems Biology, Julich
-
T. NARUMI, Y. OHNO, N. FUTATSUGI, N. OKIMOTO, A. SUENAGA, R. YANAI, AND M. TAIJI, A high-speed special-purpose computer for molecular dynamics simulations: MDGRAPE-3, in Proceedings of NIC Workshop 2006, From Computational Biophysics to Systems Biology, Julich, NIC Series, 34, 2006, pp. 29-35.
-
(2006)
NIC Series
, vol.34
, pp. 29-35
-
-
NARUMI, T.1
OHNO, Y.2
FUTATSUGI, N.3
OKIMOTO, N.4
SUENAGA, A.5
YANAI, R.6
TAIJI, M.7
-
5
-
-
34548274117
-
A 185 TFLOPS simulation of amyloid-forming peptides from Yeast prion Sup35 with the special-purpose computer system MDGRAPE-3
-
Tampa, FL
-
T. NARUMI, Y. OHNO, N. OKIMOTO, T. KOISHI, A. SUENAGA, N. FUTATSUGI, R. YANAI, R. HIMENO, S. FUJIKAWA, M. IKEI, AND M. TAIJI, A 185 TFLOPS simulation of amyloid-forming peptides from Yeast prion Sup35 with the special-purpose computer system MDGRAPE-3, in Proceedings of SC2006, Tampa, FL, 2006.
-
(2006)
Proceedings of SC2006
-
-
NARUMI, T.1
OHNO, Y.2
OKIMOTO, N.3
KOISHI, T.4
SUENAGA, A.5
FUTATSUGI, N.6
YANAI, R.7
HIMENO, R.8
FUJIKAWA, S.9
IKEI, M.10
TAIJI, M.11
-
6
-
-
0002741725
-
-
D. SUGIMOTO, Y. CHIKADA, J.MAKING, T. ITO, T. EBISUZAKI, AND M. UMEMURA, A special purpose computer for gravitational many-body problems, Nature, 345 (1990), pp. 33-35.
-
D. SUGIMOTO, Y. CHIKADA, J.MAKING, T. ITO, T. EBISUZAKI, AND M. UMEMURA, A special purpose computer for gravitational many-body problems, Nature, 345 (1990), pp. 33-35.
-
-
-
-
8
-
-
0033593647
-
Computational physics - astrophysics on the GRAPE family of special-purpose computers
-
P. HUT AND J. MAKINO, Computational physics - astrophysics on the GRAPE family of special-purpose computers, Science, 283 (1999), pp. 501-505.
-
(1999)
Science
, vol.283
, pp. 501-505
-
-
HUT, P.1
MAKINO, J.2
-
9
-
-
27344435504
-
-
D. PHAM, S. ASANO, M. BOLLIGER, M. N. DAY, H. P. HOFSTEE, C. JOHNS, J. KAHLE, A. KAMEYAMA, J. KEATY, Y. MASUBUCHI, M. RILEY, D. SHIPPY, D. STASIAK, M. SUZUOKI, M. WANG, J. WARNOCK, S. WEITZEL, D. WENDEL, T. YAMAZAKI, AND K. YAZAWA, The design and implementation of a first-generation CELL processor, in Proc. Solid-State Circuits Conference, 1 (2005), pp. 184-592.
-
D. PHAM, S. ASANO, M. BOLLIGER, M. N. DAY, H. P. HOFSTEE, C. JOHNS, J. KAHLE, A. KAMEYAMA, J. KEATY, Y. MASUBUCHI, M. RILEY, D. SHIPPY, D. STASIAK, M. SUZUOKI, M. WANG, J. WARNOCK, S. WEITZEL, D. WENDEL, T. YAMAZAKI, AND K. YAZAWA, The design and implementation of a first-generation CELL processor, in Proc. Solid-State Circuits Conference, 1 (2005), pp. 184-592.
-
-
-
-
10
-
-
55249090577
-
-
http://www.playstation.com/
-
-
-
-
11
-
-
55249084340
-
-
http://www.nvidia.com/
-
-
-
-
12
-
-
55249105383
-
-
http://www.intel.com/products/processor/xeon5000/index.html
-
-
-
-
13
-
-
55249119210
-
-
D. A. CASE, T. A. DARDEN, T. E. CHEATHAM III, C. L. SIMMERLING, J. WANG, R. E. DUKE, R. LUO, K. M. MERZ, B. WANG, D. A. PEARLMAN, M. CROWLEY, S. BROZELL, V. TSUI, H. GOHLKE, J. MONGAN, V. HORNAK, G. CUI, P. BEROZA, C. SCHAFMEISTER, J. W. CALDWELL, W. S. ROSS, AND P. A. KOLLMAN, Amber 8.0, University of California, San Francisco, 2004.
-
D. A. CASE, T. A. DARDEN, T. E. CHEATHAM III, C. L. SIMMERLING, J. WANG, R. E. DUKE, R. LUO, K. M. MERZ, B. WANG, D. A. PEARLMAN, M. CROWLEY, S. BROZELL, V. TSUI, H. GOHLKE, J. MONGAN, V. HORNAK, G. CUI, P. BEROZA, C. SCHAFMEISTER, J. W. CALDWELL, W. S. ROSS, AND P. A. KOLLMAN, Amber 8.0, University of California, San Francisco, 2004.
-
-
-
-
14
-
-
55249113576
-
-
http://mdgrape.gsc.riken.jp/tmp/MDGRAPE3memo_e.pdf
-
-
-
-
15
-
-
34548740086
-
Porting the GROMACS Molecular Dynamics Code to the Cell Processor
-
Long Beach, CA
-
S. OLIVIER, J. PRINS, J. DERBY, AND K. VU, Porting the GROMACS Molecular Dynamics Code to the Cell Processor, in Proceedings of the eighth IEEE International Workshop on Parallel and Distributed Scientific and Engineering Computing, Long Beach, CA, 2007.
-
(2007)
Proceedings of the eighth IEEE International Workshop on Parallel and Distributed Scientific and Engineering Computing
-
-
OLIVIER, S.1
PRINS, J.2
DERBY, J.3
VU, K.4
-
16
-
-
27344454932
-
Gromacs: Fast, flexible, and free
-
D. VAN DER SPOEL, E. LINDAHL, B. HESS, G. GROENHOF, A. E. MARK, AND H. J. BERENDSEN Gromacs: Fast, flexible, and free, J. Comput. Chem., 26 (2005), pp. 1701-1718.
-
(2005)
J. Comput. Chem
, vol.26
, pp. 1701-1718
-
-
VAN DER SPOEL, D.1
LINDAHL, E.2
HESS, B.3
GROENHOF, G.4
MARK, A.E.5
BERENDSEN, H.J.6
-
17
-
-
55249112421
-
-
http://www-03.ibm.com/systems/bladecenter/
-
-
-
-
18
-
-
55249096865
-
-
http://fedoraproject.org/
-
-
-
-
19
-
-
0034344894
-
-
A. KAWAI, T. FUKUSHIGE, J. MAKING, AND M. TAIJI, GRAPE-5: A special-purpose computer for N-body simulation, Publ. Astron. Soc. Japan, 52 (2000), p. 659.
-
(2000)
J. MAKING, AND M. TAIJI, GRAPE-5: A special-purpose computer for N-body simulation, Publ. Astron. Soc. Japan
, vol.52
, pp. 659
-
-
KAWAI, A.1
FUKUSHIGE, T.2
-
20
-
-
33751225374
-
Performance tuning of N-body codes on modern microprocessors: I. Direct integration with a hermite scheme on x86_64 architecture
-
K. NITADORI, J. MAKINO, AND P. HUT, Performance tuning of N-body codes on modern microprocessors: I. Direct integration with a hermite scheme on x86_64 architecture, New Astron., 12 (2006), pp. 169-181.
-
(2006)
New Astron
, vol.12
, pp. 169-181
-
-
NITADORI, K.1
MAKINO, J.2
HUT, P.3
-
21
-
-
55249106828
-
-
http://grape.astron.s.u-tokyo.ac.jp/~nitadori/phantom/
-
-
-
-
22
-
-
0001609767
-
HARP: A special-purpose computer for N-body simulations
-
J. MAKINO, E. KOKUBO, AND M. TAIJI, HARP: A special-purpose computer for N-body simulations, Publ. Astron. Soc. Japan, 45 (1993), p. 349.
-
(1993)
Publ. Astron. Soc. Japan
, vol.45
, pp. 349
-
-
MAKINO, J.1
KOKUBO, E.2
TAIJI, M.3
-
23
-
-
0003657590
-
-
Addison-Wesley, Reading, MA
-
D. E. KNUTH, The Art of Computer Programming: Seminumerical Algorithms, Vol. 2, Addison-Wesley, Reading, MA, 1969.
-
(1969)
The Art of Computer Programming: Seminumerical Algorithms
, vol.2
-
-
KNUTH, D.E.1
-
24
-
-
0000810983
-
A floating-point technique for extending the available precision
-
T. J. DEKKER, A floating-point technique for extending the available precision, Numer. Math., 18 (1971), pp. 224-242.
-
(1971)
Numer. Math
, vol.18
, pp. 224-242
-
-
DEKKER, T.J.1
-
25
-
-
0036750778
-
Numerical simulations of magnetic materials with MD-GRAPE: Curvature induced anisotropy
-
B. G. ELMEGREEN, R. KOCH, K. YASUOKA, H. FURUSAWA, T. NARUMI, R. SUSUKITA, AND T. EBISUZAKI, Numerical simulations of magnetic materials with MD-GRAPE: Curvature induced anisotropy, J. Magnetism Magnetic Mater., 250 (2002), pp. 39-48.
-
(2002)
J. Magnetism Magnetic Mater
, vol.250
, pp. 39-48
-
-
ELMEGREEN, B.G.1
KOCH, R.2
YASUOKA, K.3
FURUSAWA, H.4
NARUMI, T.5
SUSUKITA, R.6
EBISUZAKI, T.7
-
26
-
-
2442654313
-
Simulations of magnetic materials with MDGRAPE-2
-
B. G. ELMEGREEN, R. KOCH, M. E. SCHABES, T. CRAWFORD, T. EBISUZAKI, H. FURUSAWA, T. NARUMI, R. SUSUKITA, AND K. YASUOKA, Simulations of magnetic materials with MDGRAPE-2, IBM J. Res. Devel., 48 (2004), pp. 199-208.
-
(2004)
IBM J. Res. Devel
, vol.48
, pp. 199-208
-
-
ELMEGREEN, B.G.1
KOCH, R.2
SCHABES, M.E.3
CRAWFORD, T.4
EBISUZAKI, T.5
FURUSAWA, H.6
NARUMI, T.7
SUSUKITA, R.8
YASUOKA, K.9
-
27
-
-
0042329892
-
Filamentary magnetohydrodynamic simulation model, current-vortex method
-
Y. YATSUYANAGI, T. EBISUZAKI, T. HATORI, AND T. KATO, Filamentary magnetohydrodynamic simulation model, current-vortex method, Phys. Plasmas, 10 (2003), pp. 3181-3187.
-
(2003)
Phys. Plasmas
, vol.10
, pp. 3181-3187
-
-
YATSUYANAGI, Y.1
EBISUZAKI, T.2
HATORI, T.3
KATO, T.4
-
28
-
-
0041976973
-
Simulations of diocotron instability using a special-purpose computer, MDGRAPE-2
-
Y. YATSUYANAGI, Y. KIWAMOTO, T. EBISUZAKI, T. HATORI, AND T. KATO, Simulations of diocotron instability using a special-purpose computer, MDGRAPE-2, Phys. Plasmas, 10 (2003), pp. 3187-3195.
-
(2003)
Phys. Plasmas
, vol.10
, pp. 3187-3195
-
-
YATSUYANAGI, Y.1
KIWAMOTO, Y.2
EBISUZAKI, T.3
HATORI, T.4
KATO, T.5
-
29
-
-
4243860198
-
-
Rev, article
-
G. WATANABE, K. SATO, K. YASUOKA, AND T. EBISUZAKI, Microscopic study of slablike and rodlike nuclei: Quantum molecular dynamics approach, Phys. Rev. C, 66 (2002), article 012801(R).
-
(2002)
Microscopic study of slablike and rodlike nuclei: Quantum molecular dynamics approach, Phys
, Issue.Cand 66
-
-
WATANABE, G.1
SATO, K.2
YASUOKA, K.3
EBISUZAKI, T.4
-
30
-
-
17144441449
-
-
Rev, article
-
G. WATANABE, K. SATO, K. YASUOKA, AND T. EBISUZAKI, Phases of hot nuclear matter at subnuclear densities, Phys. Rev. C, 69 (2004), article 055805.
-
(2004)
Phases of hot nuclear matter at subnuclear densities, Phys
, Issue.Cand 69
, pp. 055805
-
-
WATANABE, G.1
SATO, K.2
YASUOKA, K.3
EBISUZAKI, T.4
-
31
-
-
33645927946
-
Accelerating boundary integral equation method using a special-purpose computer
-
T. TAKAHASHI, A. KAWAI, AND T. EBISUZAKI, Accelerating boundary integral equation method using a special-purpose computer, Internat. J. Numer. Methods Engrg., 66 (2005), pp. 529-548.
-
(2005)
Internat. J. Numer. Methods Engrg
, vol.66
, pp. 529-548
-
-
TAKAHASHI, T.1
KAWAI, A.2
EBISUZAKI, T.3
-
32
-
-
22844436061
-
Solving the Poisson-Boltzmann equation with the specialized computer chip MD-GRAPE-2
-
S. HOFINGERIN, Solving the Poisson-Boltzmann equation with the specialized computer chip MD-GRAPE-2, J. Comput. Chem., 26 (2005), pp. 1148-1154.
-
(2005)
J. Comput. Chem
, vol.26
, pp. 1148-1154
-
-
HOFINGERIN, S.1
-
33
-
-
34447100178
-
Fast Vortex method calculation using a special-purpose computer
-
T. K. SHEEL, K. YASUOKA, AND S. OBI, Fast Vortex method calculation using a special-purpose computer, Comput. Fluids, 36 (2007), pp. 1319-1326.
-
(2007)
Comput. Fluids
, vol.36
, pp. 1319-1326
-
-
SHEEL, T.K.1
YASUOKA, K.2
OBI, S.3
-
34
-
-
55249092001
-
-
M. S. WARREN, J. K. SALMON, D. J. DECKER, M. P. GODA, AND T. STERLING, Pentium Pro Inside: I. A Treecode at 430 Gigaflops on ASCI Red II. Price/Performance of $50/M flop on Loki and Hyglac, in Proceedings of SC97, San Jose, CA, 1997.
-
M. S. WARREN, J. K. SALMON, D. J. DECKER, M. P. GODA, AND T. STERLING, Pentium Pro Inside: I. A Treecode at 430 Gigaflops on ASCI Red II. Price/Performance of $50/M flop on Loki and Hyglac, in Proceedings of SC97, San Jose, CA, 1997.
-
-
-
-
35
-
-
33846823909
-
Particle mesh Ewald: An N Log(N) method for ewald sums in large systems
-
T. DARDEN, D. YORK, AND L. PEDERSEN, Particle mesh Ewald: An N Log(N) method for ewald sums in large systems, J. Chem. Phys., 98 (1993), pp. 10089-10092.
-
(1993)
J. Chem. Phys
, vol.98
, pp. 10089-10092
-
-
DARDEN, T.1
YORK, D.2
PEDERSEN, L.3
|