-
1
-
-
3042639381
-
Long perfect dinucleotide repeats are typical of vertebrates show motif preferences and size convergence
-
Almeida P., and Penha C. Long perfect dinucleotide repeats are typical of vertebrates show motif preferences and size convergence. Mol. Biol. Evol. 21 (2004) 1226-1233
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 1226-1233
-
-
Almeida, P.1
Penha, C.2
-
3
-
-
1542376815
-
Birth and evolutionary history of a human minisatellite
-
Boán F., Blanco M.G., Quinteiro J., Mouriño S., and Gómez-Márquez J. Birth and evolutionary history of a human minisatellite. Mol. Biol. Evol. 21 (2004) 228-235
-
(2004)
Mol. Biol. Evol.
, vol.21
, pp. 228-235
-
-
Boán, F.1
Blanco, M.G.2
Quinteiro, J.3
Mouriño, S.4
Gómez-Márquez, J.5
-
5
-
-
33749991391
-
The rise, fall and renaissance of microsatellites in eukaryotic genomes
-
Buschiazzo E., and Gemmell N.J. The rise, fall and renaissance of microsatellites in eukaryotic genomes. Bioessays 28 (2006) 1040-1050
-
(2006)
Bioessays
, vol.28
, pp. 1040-1050
-
-
Buschiazzo, E.1
Gemmell, N.J.2
-
6
-
-
3042782819
-
Microsatellite: simple sequences with complex evolution
-
Ellegren H. Microsatellite: simple sequences with complex evolution. Nature Rev. Genet. 5 (2004) 435-445
-
(2004)
Nature Rev. Genet.
, vol.5
, pp. 435-445
-
-
Ellegren, H.1
-
7
-
-
0000461280
-
Confidence limits on phylogenies: an approach using the bootstrap
-
Felsenstein J. Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39 (1985) 783-791
-
(1985)
Evolution
, vol.39
, pp. 783-791
-
-
Felsenstein, J.1
-
8
-
-
12844262253
-
Uncommon Alu-mediated NF-1 microdeletion with a obreakpoint inside the NF-1 gene
-
Gervasini C., Venturin M., Orzan F., Friso A., Clemente M., Tenconi R., Larizza L., and Riva P. Uncommon Alu-mediated NF-1 microdeletion with a obreakpoint inside the NF-1 gene. Genomics 85 (2005) 273-279
-
(2005)
Genomics
, vol.85
, pp. 273-279
-
-
Gervasini, C.1
Venturin, M.2
Orzan, F.3
Friso, A.4
Clemente, M.5
Tenconi, R.6
Larizza, L.7
Riva, P.8
-
9
-
-
0033360816
-
The natural history of the primates
-
Goodman M. The natural history of the primates. Am. J. Hum. Genet. 64 (1999) 31-39
-
(1999)
Am. J. Hum. Genet.
, vol.64
, pp. 31-39
-
-
Goodman, M.1
-
10
-
-
0002051540
-
Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
-
Hall T.A. Bioedit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucleic Acids Symp. Ser. 41 (1999) 95-98
-
(1999)
Nucleic Acids Symp. Ser.
, vol.41
, pp. 95-98
-
-
Hall, T.A.1
-
11
-
-
0002715940
-
Microsatellites and other simple sequences
-
Goldstein D., and Schlötterer C. (Eds), Oxford University Press, New York
-
Hancock J.M. Microsatellites and other simple sequences. In: Goldstein D., and Schlötterer C. (Eds). Microsatellites: Evolution and Applications (1999), Oxford University Press, New York 1-9
-
(1999)
Microsatellites: Evolution and Applications
, pp. 1-9
-
-
Hancock, J.M.1
-
13
-
-
33847253862
-
Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model
-
Hobolth A., Christensen O.F., Mailund T., and Schierup M.H. Genomic relationships and speciation times of human, chimpanzee, and gorilla inferred from a coalescent hidden Markov model. PLoS Genet. 3 (2007) e7
-
(2007)
PLoS Genet.
, vol.3
-
-
Hobolth, A.1
Christensen, O.F.2
Mailund, T.3
Schierup, M.H.4
-
14
-
-
31844441063
-
Origin and diversification of minisatellites derived from human Alu sequences
-
Jurka J., and Gentles A.J. Origin and diversification of minisatellites derived from human Alu sequences. Gene 365 (2006) 21-26
-
(2006)
Gene
, vol.365
, pp. 21-26
-
-
Jurka, J.1
Gentles, A.J.2
-
15
-
-
0037100671
-
MAFFT: a novel method for rapid multiple alignment based on fast Fourier transform
-
Katho K., Misawa K., Kuma K., and Miyata T. MAFFT: a novel method for rapid multiple alignment based on fast Fourier transform. Nucleic Acids Res. 30 14 (2002) 3059-3066
-
(2002)
Nucleic Acids Res.
, vol.30
, Issue.14
, pp. 3059-3066
-
-
Katho, K.1
Misawa, K.2
Kuma, K.3
Miyata, T.4
-
16
-
-
0036778597
-
The role of Alu repeat clusters as mediators of recurrent chromosomal aberrations in tumors
-
Kolomietz E., Meyn M.S., Pandita A., and Squire J.A. The role of Alu repeat clusters as mediators of recurrent chromosomal aberrations in tumors. Genes Chromosomes Cancer 35 (2002) 97-112
-
(2002)
Genes Chromosomes Cancer
, vol.35
, pp. 97-112
-
-
Kolomietz, E.1
Meyn, M.S.2
Pandita, A.3
Squire, J.A.4
-
17
-
-
0032168989
-
Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations
-
Kruglyak S., Durrett R., Schug M., and Aquadro C.F. Equilibrium distributions of microsatellite repeat length resulting from a balance between slippage events and point mutations. Proc. Natl. Acad. Sci. USA 95 (1998) 10774-10778
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 10774-10778
-
-
Kruglyak, S.1
Durrett, R.2
Schug, M.3
Aquadro, C.F.4
-
18
-
-
0023256559
-
Slipped-strand mispairing: a major mechanism for DNA sequence evolution
-
Levinson G., and Gutman G.A. Slipped-strand mispairing: a major mechanism for DNA sequence evolution. Mol. Biol. Evol. 4 (1987) 203-221
-
(1987)
Mol. Biol. Evol.
, vol.4
, pp. 203-221
-
-
Levinson, G.1
Gutman, G.A.2
-
19
-
-
33748620023
-
Palindromes and genomic stress fractures: bracing and repairing damage
-
Lewis S.M., and Coté A.G. Palindromes and genomic stress fractures: bracing and repairing damage. DNA Repair 5 (2006) 1146-1160
-
(2006)
DNA Repair
, vol.5
, pp. 1146-1160
-
-
Lewis, S.M.1
Coté, A.G.2
-
20
-
-
0029892773
-
The birth of microsatellites
-
Messier W., Li S., and Stewart C. The birth of microsatellites. Nature 381 (1996) 483
-
(1996)
Nature
, vol.381
, pp. 483
-
-
Messier, W.1
Li, S.2
Stewart, C.3
-
21
-
-
33244488048
-
Incorporating information from length-mutational events into phylogenetic analysis
-
Müller K.F. Incorporating information from length-mutational events into phylogenetic analysis. Mol. Phylogenet. Evol. 38 (2006) 667-676
-
(2006)
Mol. Phylogenet. Evol.
, vol.38
, pp. 667-676
-
-
Müller, K.F.1
-
22
-
-
0037461782
-
The mosaic that is our genome
-
Pääbo S. The mosaic that is our genome. Nature 421 (2003) 409-411
-
(2003)
Nature
, vol.421
, pp. 409-411
-
-
Pääbo, S.1
-
23
-
-
55049111982
-
-
Rambaut, A., Drummond, A.J., 2007. Tracer v1.4, Available from http://beast.bio.ed.ac.uk/Tracer.
-
Rambaut, A., Drummond, A.J., 2007. Tracer v1.4, Available from http://beast.bio.ed.ac.uk/Tracer.
-
-
-
-
24
-
-
22844450838
-
Joint bayesian estimation of alignment and phylogeny
-
Redelings B.D., and Suchard M.A. Joint bayesian estimation of alignment and phylogeny. Syst. Biol. 54 3 (2005) 401-418
-
(2005)
Syst. Biol.
, vol.54
, Issue.3
, pp. 401-418
-
-
Redelings, B.D.1
Suchard, M.A.2
-
25
-
-
34247340566
-
Incorporating indel information into phylogeny estimation for rapidly emerging pathogens
-
Redelings B.D., and Suchard M.A. Incorporating indel information into phylogeny estimation for rapidly emerging pathogens. BMC Evol. Biol. 7 (2007) 40
-
(2007)
BMC Evol. Biol.
, vol.7
, pp. 40
-
-
Redelings, B.D.1
Suchard, M.A.2
-
26
-
-
33846889524
-
Molecular refinement of gibbon genome rearrangements
-
Roberto R., Capozzi O., Wilson R.K., Mardis E.R., Lomiento M., Tuzun E., Cheng Z., Mootnick A.R., Archidiacono N., Rocchi M., and Eichler E. Molecular refinement of gibbon genome rearrangements. Genome Res. 17 (2007) 249-257
-
(2007)
Genome Res.
, vol.17
, pp. 249-257
-
-
Roberto, R.1
Capozzi, O.2
Wilson, R.K.3
Mardis, E.R.4
Lomiento, M.5
Tuzun, E.6
Cheng, Z.7
Mootnick, A.R.8
Archidiacono, N.9
Rocchi, M.10
Eichler, E.11
-
27
-
-
0032063424
-
A threshold size for microsatellite expansion
-
Rose O., and Falush D. A threshold size for microsatellite expansion. Mol. Biol. Evol. 15 (1998) 613-615
-
(1998)
Mol. Biol. Evol.
, vol.15
, pp. 613-615
-
-
Rose, O.1
Falush, D.2
-
28
-
-
34447280568
-
The relative performance of indel-coding methods in simulations
-
Simmons M.P., Müller K.F., and Norton A.P. The relative performance of indel-coding methods in simulations. Mol. Phylogenet. Evol. 44 (2007) 724-740
-
(2007)
Mol. Phylogenet. Evol.
, vol.44
, pp. 724-740
-
-
Simmons, M.P.1
Müller, K.F.2
Norton, A.P.3
-
29
-
-
33747863926
-
BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny
-
Suchard M.A., and Redelings B.D. BAli-Phy: simultaneous Bayesian inference of alignment and phylogeny. Bioinformatics 22 (2006) 2047-2048
-
(2006)
Bioinformatics
, vol.22
, pp. 2047-2048
-
-
Suchard, M.A.1
Redelings, B.D.2
-
31
-
-
0033911639
-
Slipped-strand mispairing at noncontiguous repeats in Poecilia reticulata: a model for minisatellite birth
-
Taylor J.S., and Breden F. Slipped-strand mispairing at noncontiguous repeats in Poecilia reticulata: a model for minisatellite birth. Genetics 155 (2000) 1313-1320
-
(2000)
Genetics
, vol.155
, pp. 1313-1320
-
-
Taylor, J.S.1
Breden, F.2
-
32
-
-
55049122954
-
-
Varón, A., Vinh, L. S., Bomash, I., Wheeler, W.C., 2008. POY 4.0.2870. American Museum of Natural History. http://research.amnh.org/scicomp/projects/poy.php.
-
Varón, A., Vinh, L. S., Bomash, I., Wheeler, W.C., 2008. POY 4.0.2870. American Museum of Natural History. http://research.amnh.org/scicomp/projects/poy.php.
-
-
-
-
33
-
-
0033865403
-
Minisatellites: mutability and genome architecture
-
Vergnaud G., and Denoeud F. Minisatellites: mutability and genome architecture. Genome Res. 10 (2000) 899-907
-
(2000)
Genome Res.
, vol.10
, pp. 899-907
-
-
Vergnaud, G.1
Denoeud, F.2
-
34
-
-
0037173031
-
Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments
-
Webster M., Smith N.G., and Ellegren H. Microsatellite evolution inferred from human-chimpanzee genomic sequence alignments. Proc. Natl. Acad. Sci. USA 99 (2002) 8748-8753
-
(2002)
Proc. Natl. Acad. Sci. USA
, vol.99
, pp. 8748-8753
-
-
Webster, M.1
Smith, N.G.2
Ellegren, H.3
-
35
-
-
0002378350
-
Homology and DNA sequence data
-
Wagner G.P. (Ed), Academic Press, New York
-
Wheeler W.C. Homology and DNA sequence data. In: Wagner G.P. (Ed). The Character Concept in Evolutionary Biology (2001), Academic Press, New York 303-318
-
(2001)
The Character Concept in Evolutionary Biology
, pp. 303-318
-
-
Wheeler, W.C.1
-
36
-
-
0035010492
-
Homology and the optimization of DNA sequence data
-
Wheeler W.C. Homology and the optimization of DNA sequence data. Cladistics 17 (2001) S3-S11
-
(2001)
Cladistics
, vol.17
-
-
Wheeler, W.C.1
-
37
-
-
0035100172
-
Mobile elements and the genesis of microsatellites in dipterans
-
Wilder J., and Hollocher H. Mobile elements and the genesis of microsatellites in dipterans. Mol. Biol. Evol. 18 (2001) 384-392
-
(2001)
Mol. Biol. Evol.
, vol.18
, pp. 384-392
-
-
Wilder, J.1
Hollocher, H.2
-
38
-
-
0035902483
-
Repeat expansion by homologous recombination in the mouse germ line at palindromic sequences
-
Zhou Z., Akgun E., and Jasin M. Repeat expansion by homologous recombination in the mouse germ line at palindromic sequences. Proc. Natl. Acad. Sci. USA 98 (2001) 8326-8333
-
(2001)
Proc. Natl. Acad. Sci. USA
, vol.98
, pp. 8326-8333
-
-
Zhou, Z.1
Akgun, E.2
Jasin, M.3
-
39
-
-
0033935516
-
A phylogenetic perspective on sequence evolution in microsatellite loci
-
Zhu Y., Queller D., and Strassmann J.E. A phylogenetic perspective on sequence evolution in microsatellite loci. J. Mol. Evol. 50 (2000) 324-338
-
(2000)
J. Mol. Evol.
, vol.50
, pp. 324-338
-
-
Zhu, Y.1
Queller, D.2
Strassmann, J.E.3
|