Thermobifida halotolerans sp. nov., isolated from a salt mine sample, and emended description of the genus Thermobifida

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 8, 2008, Pages 1821-1825

  Yang, Ling Ling ^a,e   Tang, Shu Kun ^a,e   Zhang, Yu Qin ^a,b,e   Zhi, Xiao Yang ^a,e   Wang, Dong ^c   Xu, Li Hua ^a,e   Li, Wen Jun ^a,d,e  

^a BEIJING UNIVERSITY OF POSTS AND TELECOMMUNICATIONS   (China)

^b INSTITUTE OF MEDICINAL BIOTECHNOLOGY   (China)

^c HONGHE UNIVERSITY   (China)

^d SOUTH CHINA SEA INSTITUTE OF OCEANOLOGY   (China)

^e YUNNAN UNIVERSITY   (China)

Author keywords

[No Author keywords available]

Indexed keywords

RNA 16S; BACTERIAL DNA; FATTY ACID; RIBOSOME DNA; SODIUM CHLORIDE;

ARTICLE; BACTERIAL STRAIN; BACTERIUM ISOLATION; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; GENE SEQUENCE; GENOTYPE; GRAM POSITIVE BACTERIUM; NONHUMAN; NUCLEOTIDE SEQUENCE; PHENOTYPE; PRIORITY JOURNAL; SEQUENCE ANALYSIS; SPECIES COMPARISON; STRAIN DIFFERENCE; STRAIN IDENTIFICATION; TAXONOMY; THERMOBIFIDA HALOTOLERANS; ACTINOMYCETALES; BACTERIUM IDENTIFICATION; CHINA; CLASSIFICATION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; MICROBIOLOGY; MINING; MOLECULAR GENETICS; NUCLEIC ACID HYBRIDIZATION; PHYLOGENY; PHYSIOLOGY; RNA GENE; SPECIES DIFFERENCE;

THERMOBIFIDA; THERMOBIFIDA ALBA; THERMOBIFIDA CELLULOSILYTICA; THERMOBIFIDA FUSCA;

ACTINOMYCETALES; BACTERIAL TYPING TECHNIQUES; CHINA; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; GENOTYPE; MINING; MOLECULAR SEQUENCE DATA; NUCLEIC ACID HYBRIDIZATION; PHENOTYPE; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SOIL MICROBIOLOGY; SPECIES SPECIFICITY;

EID: 54749094416     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65732-0     Document Type: Article

References (25)

1. Altschul, S. F., Madden, T. L., Schäffer, A. A., Zhang, J., Zhang, Z., Miller, W. & Lipman, D. J. (1997). Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res 25, 3389-3402.
2. Collins, M. D. & Jones, D. (1980). Lipids in the classification and identification of coryneform bacteria containing peptidoglycans based on 2,4- diaminobutyric acid. J Appl Bacteriol 48, 459-470.
3. Collins, M. D., Pirouz, T., Goodfellow, M. & Minnikin, D. E. (1977). Distribution of menaquinones in actinomycetes and corynebacteria. Gen Microbiol 100, 221-230.
4. Cross, T. & Goodfellow, M. (1973). Taxonomy and classification of the actinomycetes. In Actinomycetales: Characteristics and Practical Importance, pp. 11-112. Edited by G. Sykes & F. A. Skinner. London: Academic Press.
5. Felsenstein, J. (1985). Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-789.
6. Groth, I., Schumann, P., Rainey, F. A., Martin, K., Schuetze, B. & Augsten, K. (1997). Demetria terragena gen. nov., sp. nov., a new genus of actinomycetes isolated from compost soil. Int J Syst Bacteriol 47, 1129-1133.
7. He, L., Li, W., Huang, Y., Wang, L., Liu, Z., Lanoot, B., Vancanneyt, M. & Swings, J. (2005). Streptomyces jietaisiensis sp. nov., isolated from soil in northern China. Int J Syst Evol Microbiol 55, 1939-1944.
8. Kelly, K. L. (1964). Inter-Society Color Council - National Bureau of Standards Color Name Charts Illustrated with Centroid Colors. Washington, DC: US Government Printing Office.
9. Kroppenstedt, R. M. (1985). Fatty acid and menaquinone analysis of actinomycetes and related organisms. In Chemical Methods in Bacterial Systematics (Society for Applied Bacteriology Technical Series, vol. 20), pp. 173-199. Edited by M. Goodfellow & D. E. Minnikin. New York: Academic Press.
10. Kroppenstedt, R. M. & Evtushenko, L. I. (2006). The family Nocardiopsaceae. In The Prokaryotes. A Handbook on the Biology of Bacteria, 3rd edn, vol. 3, pp. 754-795. Edited by M. Dworkin, S. Falkow, E. Rosenberg, K. H. Schleifer & E. Stackebrandt. New York: Springer.
11. Kukolya, J., Nagy, I., Laday, M., Tóth, E., Oravecz, O., Márialigeti, K. & Hornok, L. (2002). Thermobifida cellulolytica sp. nov., a novel lignocellulose-decomposing actinomycete. Int J Syst Evol Microbiol 52, 1193-1199.
12. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 50-163.
13. Li, W.-J., Xu, P., Schumann, P., Zhang, Y.-O., Pukall, R., Xu, L.-H., Stackebrandt, E. & Jiang, C.-L. (2007). Georgenia ruanii sp. nov., a novel actinobacterium isolated from forest soil in Yunnan (China), and emended description of the genus Georgenia. Int J Syst Evol Microbiol 57, 1424-1428.
14. Locci, R., Baldacci, E. & Petrolini, B. (1967). Contribution to the study of oligosporic actinomycetes. I. Description of a new species of Actinobifida: Actinobifida alba sp. nov. and revision of the genus. G Microbiol 15, 79-91.
15. Lykidis, A., Mavromatis, K., Ivanova, N., Anderson, I., Land, M., DiBartolo, G., Martinez, M., Lapidus, A., Lucas, S. & other authors (2007). Genome sequence and analysis of the soil cellulolytic actinomycete Thermobifida fusca YX. J Bacteriol 189, 2477-2486.
16. McCarthy, A. J. & Cross, T. (1984). A taxonomic study of Thermomonospora and other nonsporic actinomycetes. J Gen Microbiol 130, 5-25.
17. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
18. Minnikin, D. E., Collins, M. D. & Goodfellow, M. (1979). Fatty acid and polar lipid composition in the classification of Cellulomonas, Oerskovia and related taxa. J Appl Bacteriol 47, 87-95.
19. Shirling, E. B. & Gottlieb, D. (1966). Methods for characterization of Streptomyces species. Int J Syst Bacteriol 16, 313-340.
20. Staneck, J. L. & Roberts, G. D. (1974). Simplified approach to identification of aerobic actinomycetes by thin-layer chromatography. Appl Microbiol 28, 226-231.
21. Thompson, J. D., Gibson, T. J., Plewnlak F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
22. Wayne, L. G., Brenner, D. J., Colwell, R. R., Grimont P. A. D., & Kandler O., Krichevsky, M. I., Moore, L. H., Moore, W. E. C., Murray, R. G. E. & other authors (1987). International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37, 463-464.
23. Wilson, D. B. (2004). Studies of Thermobifida fusca plant cell wall degrading enzymes. Chem Rec 4, 72-82.
24. Xu, P., Li, W.-J., Tang, S.-K., Zhang, Y.-Q., Chen, G.-Z., Chen, H.-H., Xu, L.-H. & Jiang, C.-L. (2005). Naxibacter alkalitolerans gen. nov., sp. nov., a novel member of the family 'Oxalobacteraceae' isolated from China. Int J Syst Evol Microbiol 55, 1149-1153.
25. Zhang, Z., Wang, Y. & Ruan, J. (1998). Reclassification of Thermomonospora and Microtetraspora. Int J Syst Bacteriol 48, 411-422.