-
1
-
-
0033569406
-
Molecular classification of cancer: class discovery and class prediction by gene expression monitoring
-
Golub T., Slonim D., Tamayo P., Huard C., Gaasenbeek M., Mesirov J., Coller H., Loh M., Downing J., Caligiuri M., Bloomfield C., and Lander E. Molecular classification of cancer: class discovery and class prediction by gene expression monitoring. Science 286 (1999) 531-537
-
(1999)
Science
, vol.286
, pp. 531-537
-
-
Golub, T.1
Slonim, D.2
Tamayo, P.3
Huard, C.4
Gaasenbeek, M.5
Mesirov, J.6
Coller, H.7
Loh, M.8
Downing, J.9
Caligiuri, M.10
Bloomfield, C.11
Lander, E.12
-
2
-
-
0034601455
-
Molecular classification of cutaneous malignant melanoma by gene expression profiling
-
Bittner M., Meltzer P., Chen Y., Jiang Y., Seftor I., Hendrix M., Radmacher M., Simon R., Yakhini Z., Ben-Dor A., Sampas N., Dougherty E., Wang E., Marincola F., Gooden C., Lueders J., Glatfelter A., Pollock P., Carpten J., Gillanders E., Leja D., Dietrich K., Beaudry C., Berens M., Alberts D., Sondak V., Hayward N., and Trent J. Molecular classification of cutaneous malignant melanoma by gene expression profiling. Nature 406 (2000) 536-540
-
(2000)
Nature
, vol.406
, pp. 536-540
-
-
Bittner, M.1
Meltzer, P.2
Chen, Y.3
Jiang, Y.4
Seftor, I.5
Hendrix, M.6
Radmacher, M.7
Simon, R.8
Yakhini, Z.9
Ben-Dor, A.10
Sampas, N.11
Dougherty, E.12
Wang, E.13
Marincola, F.14
Gooden, C.15
Lueders, J.16
Glatfelter, A.17
Pollock, P.18
Carpten, J.19
Gillanders, E.20
Leja, D.21
Dietrich, K.22
Beaudry, C.23
Berens, M.24
Alberts, D.25
Sondak, V.26
Hayward, N.27
Trent, J.28
more..
-
3
-
-
18244409687
-
Gene expression profiling predicts clinical outcome of breast cancer
-
van 't Veer L.J., Dai H., van de Vijver M.J., He Y.D., Hart A.A., Mao M., Peterse H.L., van der Kooy K., Marton M.J., Witteveen A.T., Schreiber G.J., Kerkhoven R.M., Roberts C., Linsley P.S., Bernards R., and Friend S.H. Gene expression profiling predicts clinical outcome of breast cancer. Nature 415 6871 (2002) 530-536
-
(2002)
Nature
, vol.415
, Issue.6871
, pp. 530-536
-
-
van 't Veer, L.J.1
Dai, H.2
van de Vijver, M.J.3
He, Y.D.4
Hart, A.A.5
Mao, M.6
Peterse, H.L.7
van der Kooy, K.8
Marton, M.J.9
Witteveen, A.T.10
Schreiber, G.J.11
Kerkhoven, R.M.12
Roberts, C.13
Linsley, P.S.14
Bernards, R.15
Friend, S.H.16
-
4
-
-
77957741951
-
On the mean accuracy of statistical pattern recognizers
-
Hughes G. On the mean accuracy of statistical pattern recognizers. IEEE Trans. Inf. Theory 14 1 (1968) 55-63
-
(1968)
IEEE Trans. Inf. Theory
, vol.14
, Issue.1
, pp. 55-63
-
-
Hughes, G.1
-
5
-
-
0018491795
-
A problem of dimensionality: a simple example
-
Trunk G.V. A problem of dimensionality: a simple example. IEEE Trans. Pattern Anal. Mach. Intell. 1 3 (1979) 306-307
-
(1979)
IEEE Trans. Pattern Anal. Mach. Intell.
, vol.1
, Issue.3
, pp. 306-307
-
-
Trunk, G.V.1
-
6
-
-
0018655616
-
Determination of optimal dimensionality in statistical pattern classification
-
Raudys I.J. Determination of optimal dimensionality in statistical pattern classification. Pattern Recognition 11 (1979) 263-270
-
(1979)
Pattern Recognition
, vol.11
, pp. 263-270
-
-
Raudys, I.J.1
-
7
-
-
0018253340
-
On the optimal number of features in the classification of multivariate Gaussian data
-
Jain A.K., and Waller W.G. On the optimal number of features in the classification of multivariate Gaussian data. Pattern Recognition 10 (1978) 365-374
-
(1978)
Pattern Recognition
, vol.10
, pp. 365-374
-
-
Jain, A.K.1
Waller, W.G.2
-
8
-
-
17544364191
-
Optimal number of features as a function of sample size for various classification rules
-
Hua J., Xiong Z., Lowey J., Suh E., and Dougherty E. Optimal number of features as a function of sample size for various classification rules. Bioinformatics 21 8 (2005) 1509-1515
-
(2005)
Bioinformatics
, vol.21
, Issue.8
, pp. 1509-1515
-
-
Hua, J.1
Xiong, Z.2
Lowey, J.3
Suh, E.4
Dougherty, E.5
-
9
-
-
10044276174
-
Determination of the optimal number of features for quadratic discriminant analysis via the normal approximation to the discriminant distribution
-
Hua J., Xiong Z., and Dougherty E. Determination of the optimal number of features for quadratic discriminant analysis via the normal approximation to the discriminant distribution. Pattern Recognition 38 3 (2005) 403-421
-
(2005)
Pattern Recognition
, vol.38
, Issue.3
, pp. 403-421
-
-
Hua, J.1
Xiong, Z.2
Dougherty, E.3
-
12
-
-
27544442586
-
Analysis of recursive gene selection approaches from microarray data
-
Li F., and Yang Y. Analysis of recursive gene selection approaches from microarray data. Bioinformatics 21 19 (2005) 3741-3747
-
(2005)
Bioinformatics
, vol.21
, Issue.19
, pp. 3741-3747
-
-
Li, F.1
Yang, Y.2
-
13
-
-
0031078007
-
Feature selection: evaluation, application, and small sample performance
-
Jain A.K., and Zongker D. Feature selection: evaluation, application, and small sample performance. IEEE Trans. Pattern Anal. Mach. Intell. 19 2 (1997) 153-158
-
(1997)
IEEE Trans. Pattern Anal. Mach. Intell.
, vol.19
, Issue.2
, pp. 153-158
-
-
Jain, A.K.1
Zongker, D.2
-
14
-
-
35748932917
-
A review of feature selection techniques in bioinformatics
-
Saeys Y., Inza I., and Larranaga P. A review of feature selection techniques in bioinformatics. Bioinformatics 23 19 (2007) 2507-2517
-
(2007)
Bioinformatics
, vol.23
, Issue.19
, pp. 2507-2517
-
-
Saeys, Y.1
Inza, I.2
Larranaga, P.3
-
15
-
-
84947767463
-
Classifier-independent feature selection for two-stage feature selection
-
Amin A., Dori H.F.D., and Pudil P. (Eds), Springer, Berlin
-
Kudo M., and Sklansky J. Classifier-independent feature selection for two-stage feature selection. In: Amin A., Dori H.F.D., and Pudil P. (Eds). Lecture Notes in Computer Science, Advances in Pattern Recognition vol. 1451 (1998), Springer, Berlin 548-554
-
(1998)
Lecture Notes in Computer Science, Advances in Pattern Recognition
, vol.1451
, pp. 548-554
-
-
Kudo, M.1
Sklansky, J.2
-
16
-
-
0033640901
-
Comparison of algorithms that select features for pattern classifiers
-
Kudo M., and Sklansky J. Comparison of algorithms that select features for pattern classifiers. Pattern Recognition 33 (2000) 24-41
-
(2000)
Pattern Recognition
, vol.33
, pp. 24-41
-
-
Kudo, M.1
Sklansky, J.2
-
17
-
-
7244248755
-
A comparative study of feature selection and multiclass classification methods for tissue classification based on gene expression
-
Li T., Zhang C., and Ogihara M. A comparative study of feature selection and multiclass classification methods for tissue classification based on gene expression. Bioinformatics 20 15 (2004) 2429-2437
-
(2004)
Bioinformatics
, vol.20
, Issue.15
, pp. 2429-2437
-
-
Li, T.1
Zhang, C.2
Ogihara, M.3
-
18
-
-
10444280144
-
An extensive comparison of recent classification tools applied to microarray data
-
Lee J.W., Lee J.B., Park M., and Song S.H. An extensive comparison of recent classification tools applied to microarray data. Comput. Stat. Data Anal. 48 4 (2005) 869-885
-
(2005)
Comput. Stat. Data Anal.
, vol.48
, Issue.4
, pp. 869-885
-
-
Lee, J.W.1
Lee, J.B.2
Park, M.3
Song, S.H.4
-
19
-
-
21144462902
-
Classification of a large microarray data set: algorithm comparison and analysis of drug signatures
-
Natsoulis G., El Ghaoui L., Lanckriet G.R.G., Tolley A.M., Leroy F., Dunlea S., Eynon B.P., Pearson C.I., Tugendreich S., and Jarnagin K. Classification of a large microarray data set: algorithm comparison and analysis of drug signatures. Genome Res. 15 5 (2005) 724-736
-
(2005)
Genome Res.
, vol.15
, Issue.5
, pp. 724-736
-
-
Natsoulis, G.1
El Ghaoui, L.2
Lanckriet, G.R.G.3
Tolley, A.M.4
Leroy, F.5
Dunlea, S.6
Eynon, B.P.7
Pearson, C.I.8
Tugendreich, S.9
Jarnagin, K.10
-
20
-
-
19744372980
-
Feature selection algorithms to find strong genes
-
Silva P., Hashimoto R., Kim S., Barrera J., Brandao L., Suh E., and Dougherty E. Feature selection algorithms to find strong genes. Pattern Recognition Lett. 26 10 (2005) 1444-1453
-
(2005)
Pattern Recognition Lett.
, vol.26
, Issue.10
, pp. 1444-1453
-
-
Silva, P.1
Hashimoto, R.2
Kim, S.3
Barrera, J.4
Brandao, L.5
Suh, E.6
Dougherty, E.7
-
21
-
-
33747344944
-
Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data
-
Jeffery I.B., Higgins D.G., and Culhane A.C. Comparison and evaluation of methods for generating differentially expressed gene lists from microarray data. BMC Bioinformatics 7 (2006) 359
-
(2006)
BMC Bioinformatics
, vol.7
, pp. 359
-
-
Jeffery, I.B.1
Higgins, D.G.2
Culhane, A.C.3
-
22
-
-
37649015028
-
Decorrelation of the true and estimated classifier errors in high-dimensional settings
-
Hanczar B., Hua J., and Dougherty E.R. Decorrelation of the true and estimated classifier errors in high-dimensional settings. EURASIP J. Bioinformatics Syst. Biol. (2007) 38473
-
(2007)
EURASIP J. Bioinformatics Syst. Biol.
, pp. 38473
-
-
Hanczar, B.1
Hua, J.2
Dougherty, E.R.3
-
23
-
-
0042388208
-
Rankgene: identification of diagnostic genes based on expression data
-
Su Y., Murali T.M., Pavlovic V., Schaffer M., and Kasif S. Rankgene: identification of diagnostic genes based on expression data. Bioinformatics 19 12 (2003) 1578-1579
-
(2003)
Bioinformatics
, vol.19
, Issue.12
, pp. 1578-1579
-
-
Su, Y.1
Murali, T.M.2
Pavlovic, V.3
Schaffer, M.4
Kasif, S.5
-
25
-
-
84992726552
-
-
I. Kononenko, Estimating attributes: analysis and extensions of relief, in: Machine Learning: ECML-94, Lecture Notes in Computer Science, vol. 784, Springer, Berlin, Heidelberg, 1994, pp. 171-182.
-
I. Kononenko, Estimating attributes: analysis and extensions of relief, in: Machine Learning: ECML-94, Lecture Notes in Computer Science, vol. 784, Springer, Berlin, Heidelberg, 1994, pp. 171-182.
-
-
-
-
26
-
-
33748962520
-
On the number of close-to-optimal feature sets
-
Dougherty E., and Brun M. On the number of close-to-optimal feature sets. Cancer Inf. 2 (2006) 189-196
-
(2006)
Cancer Inf.
, vol.2
, pp. 189-196
-
-
Dougherty, E.1
Brun, M.2
-
27
-
-
3442894519
-
Epistasis: too often neglected in complex trait studies?
-
Carlborg O., and Haley C.S. Epistasis: too often neglected in complex trait studies?. Nat. Rev. Genet. 5 8 (2004) 618-625
-
(2004)
Nat. Rev. Genet.
, vol.5
, Issue.8
, pp. 618-625
-
-
Carlborg, O.1
Haley, C.S.2
-
28
-
-
0016533974
-
A branch and bound algorithm for computing k-nearest neighbors
-
Fukunaga K., and Narendra P. A branch and bound algorithm for computing k-nearest neighbors. IEEE Trans. Comput. C-24 (1976) 750-753
-
(1976)
IEEE Trans. Comput.
, vol.C-24
, pp. 750-753
-
-
Fukunaga, K.1
Narendra, P.2
-
29
-
-
54549113454
-
-
C.-C. Chang, C.-J. Lin, LIBSVM: a library for support vector machines, Software available at 〈http://www.csie.ntu.edu.tw/~cjlin/libsvm〉, 2001.
-
C.-C. Chang, C.-J. Lin, LIBSVM: a library for support vector machines, Software available at 〈http://www.csie.ntu.edu.tw/~cjlin/libsvm〉, 2001.
-
-
-
-
31
-
-
25144463615
-
Impact of error estimation on feature-selection algorithms
-
Sima C., Attoor S., Braga-Neto U., Lowey J., Suh E., and Dougherty E. Impact of error estimation on feature-selection algorithms. Pattern Recognition 38 12 (2005) 2472-2482
-
(2005)
Pattern Recognition
, vol.38
, Issue.12
, pp. 2472-2482
-
-
Sima, C.1
Attoor, S.2
Braga-Neto, U.3
Lowey, J.4
Suh, E.5
Dougherty, E.6
-
32
-
-
33745779502
-
The molecular classification of multiple myeloma
-
Zhan F., Huang Y., Colla S., Stewart J., Hanamura I., Gupta S., Epstein J., Yaccoby S., Sawyer J., Burington B., Hollmig K., Pineda-Roman M., Tricot G., van Rhee F., Walker R., Zangari M., Crowley J., Barlogie B., and Shaughnessy J. The molecular classification of multiple myeloma. Blood 108 (2006) 2020-2028
-
(2006)
Blood
, vol.108
, pp. 2020-2028
-
-
Zhan, F.1
Huang, Y.2
Colla, S.3
Stewart, J.4
Hanamura, I.5
Gupta, S.6
Epstein, J.7
Yaccoby, S.8
Sawyer, J.9
Burington, B.10
Hollmig, K.11
Pineda-Roman, M.12
Tricot, G.13
van Rhee, F.14
Walker, R.15
Zangari, M.16
Crowley, J.17
Barlogie, B.18
Shaughnessy, J.19
-
33
-
-
33846894934
-
Gene-expression signature of benign monoclonal gammopathy evident in multiple myeloma is linked to good prognosis
-
Zhan F., Barlogie B., Arzoumanian V., Huang Y., Williams D., Hollmig K., Pineda-Roman M., Tricot G., van Rhee F., Zangari M., Dhodapkar M., and Shaughnessy J. Gene-expression signature of benign monoclonal gammopathy evident in multiple myeloma is linked to good prognosis. Blood 109 (2007) 1692-1700
-
(2007)
Blood
, vol.109
, pp. 1692-1700
-
-
Zhan, F.1
Barlogie, B.2
Arzoumanian, V.3
Huang, Y.4
Williams, D.5
Hollmig, K.6
Pineda-Roman, M.7
Tricot, G.8
van Rhee, F.9
Zangari, M.10
Dhodapkar, M.11
Shaughnessy, J.12
-
34
-
-
19044399684
-
Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling
-
Yeoh E.-J., Ross M.E., Shurtleff S.A., Williams W.K., Patel D., Mahfouz R., Behm F.G., Raimondi S.C., Relling M.V., Patel A., Cheng C., Campana D., Wilkins D., Zhou X., Li J., Liu H., Pui C.-H., Evans W.E., Naeve C., Wong L., and Downing J.R. Classification, subtype discovery, and prediction of outcome in pediatric acute lymphoblastic leukemia by gene expression profiling. Cancer Cell 1 2 (2002) 133-143
-
(2002)
Cancer Cell
, vol.1
, Issue.2
, pp. 133-143
-
-
Yeoh, E.-J.1
Ross, M.E.2
Shurtleff, S.A.3
Williams, W.K.4
Patel, D.5
Mahfouz, R.6
Behm, F.G.7
Raimondi, S.C.8
Relling, M.V.9
Patel, A.10
Cheng, C.11
Campana, D.12
Wilkins, D.13
Zhou, X.14
Li, J.15
Liu, H.16
Pui, C.-H.17
Evans, W.E.18
Naeve, C.19
Wong, L.20
Downing, J.R.21
more..
-
35
-
-
11144358111
-
Prognostically useful gene-expression profiles in acute myeloid leukemia
-
Valk P.J.M., Verhaak R.G.W., Beijen M.A., Erpelinck C.A.J., Barjesteh van Waalwijk van Doorn-Khosrovani S., Boer J.M., Beverloo H.B., Moorhouse M.J., van der Spek P.J., Lowenberg B., and Delwel R. Prognostically useful gene-expression profiles in acute myeloid leukemia. N. Engl. J. Med. 350 16 (2004) 1617-1628
-
(2004)
N. Engl. J. Med.
, vol.350
, Issue.16
, pp. 1617-1628
-
-
Valk, P.J.M.1
Verhaak, R.G.W.2
Beijen, M.A.3
Erpelinck, C.A.J.4
Barjesteh van Waalwijk van Doorn-Khosrovani, S.5
Boer, J.M.6
Beverloo, H.B.7
Moorhouse, M.J.8
van der Spek, P.J.9
Lowenberg, B.10
Delwel, R.11
-
36
-
-
33750052587
-
What should be expected from feature selection in small-sample settings
-
Sima C., and Dougherty E. What should be expected from feature selection in small-sample settings. Bioinformatics 22 19 (2006) 2430-2436
-
(2006)
Bioinformatics
, vol.22
, Issue.19
, pp. 2430-2436
-
-
Sima, C.1
Dougherty, E.2
|