Isolation and molecular characterization of the porcine stearoyl-CoA desaturase gene

Gene

Volumn 340, Issue 1, 2004, Pages 19-30

  Ren, Jun ^a,b   Knorr, Christoph ^a   Huang, Lusheng ^b   Brenig, Bertram ^a  

^a UNIVERSITY OF GÖTTINGEN   (Germany)

^b JIANGXI AGRICULTURAL UNIVERSITY   (China)

Author keywords

C EBP; CCAAT enhancer binding protein; cDNA; complementary to RNA; CPE; cytoplasmic polyadenylation element; deoxyribonucleoside triphosphate; dNTP; Expression profile; FISH; fluorescence in situ hybridization; Gene polymorphisms; Genomic organization; LINEs; Pig

Indexed keywords

ACYL COENZYME A DESATURASE; GENOMIC DNA;

3' UNTRANSLATED REGION; 5' UNTRANSLATED REGION; ANIMAL TISSUE; ARTICLE; COMPARATIVE STUDY; DNA DETERMINATION; DNA FLANKING REGION; DNA SEQUENCE; EXON; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENE IDENTIFICATION; GENE INSERTION SEQUENCE; GENE ISOLATION; GENE SEQUENCE; GENE STRUCTURE; GENETIC CONSERVATION; GENETIC TRANSCRIPTION; INTRON; ISOELECTRIC POINT; MAMMALIAN GENETICS; MOLECULAR RECOGNITION; MOLECULAR WEIGHT; NONHUMAN; NUCLEOTIDE SEQUENCE; OPEN READING FRAME; ORTHOLOGY; PRIORITY JOURNAL; PROTEIN DOMAIN; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SINGLE NUCLEOTIDE POLYMORPHISM; SWINE; TRANSCRIPTION REGULATION;

5' FLANKING REGION; AMINO ACID SEQUENCE; ANIMALS; BASE SEQUENCE; CLONING, MOLECULAR; DNA; DNA, COMPLEMENTARY; EXONS; FEMALE; GENE EXPRESSION PROFILING; GENES; INTRONS; MALE; MOLECULAR SEQUENCE DATA; POLYMORPHISM, GENETIC; POLYMORPHISM, SINGLE NUCLEOTIDE; REGULATORY SEQUENCES, NUCLEIC ACID; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; SEQUENCE HOMOLOGY, NUCLEIC ACID; STEAROYL-COA DESATURASE; SUS SCROFA;

INSERTION SEQUENCES; MAMMALIA; SUIDAE; SUS SCROFA;

EID: 5444268545     PISSN: 03781119     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.gene.2004.06.017     Document Type: Article

References (34)

1. AI-Bayati H.K., Duscher S., Kollers S., Rettenberger G., Fries R., Brenig B. Construction and characterization of a porcine P1-derived artificial chromosome (PAC) library covering 3.2 genome equivalents and cytogenetical assignment of six type I and type II loci. Mamm. Genome. 10:1999;569-572
2. Bene H., Lasky D., Ntambi J.M. Cloning and characterization of the human stearoyl-CoA desaturase gene promoter: transcriptional activation by sterol regulatory element binding protein and repression by polyunsaturated fatty acids and cholesterol. Biochem. Biophys. Res. Commun. 284:2001;1194-1198
3. Bernard L., Leroux C., Hayes H., Gautier M., Chilliard Y., Martin P. Characterization of the caprine stearoyl-CoA desaturase gene and its mRNA showing an unusually long 3′-UTR sequence arising from a single exon. Gene. 281:2001;53-61
4. Chang B.E., Heish S.L., Kuo C.M. Molecular cloning of full-length DNA encoding delta-9 desaturase through PCR strategies and its genomic organization and expression in grass carp (Ctenopharyngodon idella). Mol. Rep. Dev. 58:2001;245-254
5. Cohen P., Miyazaki M., Socci N.D., Hagge-Greenberg A., Liedtke W., Soukas A.A., Sharma R., Hudgins L.C., Ntambi J.M., Friedman J.M. Role for stearoyl-CoA desaturase-1 in leptin-mediated weight loss. Science. 297:2002;240-243
6. Eigenheer A.L., Young S., Blomquist G.J., Borgeson C.E., Tillman J.A., Tittiger C. Isolation and molecular characterization of Musca domestica delta-9 desaturase sequences. Insect Mol. Biol. 11:2002;533-542
7. Enoch H.G., Catala A., Strittmatter P. Mechanism of rat microsomal stearoyl-CoA desaturase. J. Biol. Chem. 251:1976;5095-5103
8. Heinemann F.S., Mziaut H., Korza G., Ozols J. A microsomal endopeptidase from liver that preferentially degrades stearoyl-CoA desaturase. Biochemistry. 42:2003;6929-6937
9. Hsieh S.L., Liao W.L., Kuo C.M. Molecular cloning and sequence analysis of stearoyl-CoA desaturase in milkfish, Chanos chanos. Comp. Biochem. Physiol. 130B:2001;467-477
10. Hsieh S.L., Liu R.W., Wu C.H., Cheng W.T., Kuo C.M. cDNA nucleotide sequence coding for stearoyl-CoA desaturase and its expression in the zebrafish (Danio rerio) embryo. Mol. Rep. Dev. 66:2003;325-333
11. Kaestner K.H., Ntambi J.M., Kelly T.J., Lane M.D. Differentiation-induced gene expression in 3T3-L1 preadipocytes: a second differentially expressed gene encoding stearoyl-CoA desaturase. J. Biol. Chem. 264:1989;14755-14761
12. Mihara K. Structure and regulation of rat liver microsomal stearoyl-CoA desaturase gene. J. Biochem. 108:1990;1022-1029
13. Miyazaki M., Ntambi J.M. Role of steroyl-coenzyme A desaturase in lipid metabolism. Prostaglandins, Leukot. Essent. Fat. Acids. 68:2003;113-121
14. Miyazaki M., Kim Y.C., Gray-Keller M.P., Attie A.D., Ntambi J.M. The biosynthesis of hepatic cholesterol esters and triglycerides is impaired in mice with a disruption of the gene for stearoyl-CoA desaturse 1. J. Biol. Chem. 275:2000;30132-30138
15. Miyazaki M., Kim Y.C., Ntambi J.M. A lipogenic diet in mice with a disruption of the stearoyl-CoA desaturase 1 gene reveals a stringent requirement of endogenous monounsaturated fatty acids for triglyceride synthesis. J. Lipid Res. 42:2001;1018-1024
16. Miyazaki M., Jacobson M.J., Man W.C., Cohen P., Asilmaz E., Friedman J.M., Ntambi J.M. Identification and characterization of murine SCD-4, a novel heart-specific stearoyl-CoA desaturase isoform regulated by leptin and dietary factors. J. Biol. Chem. 278:2003;33904-33911
17. Ntambi J.M. Regulation of stearoyl-CoA desaturase by polyunsaturated fatty acids and cholesterol. J. Lipid Res. 40:1999;1549-1558
18. Ntambi J.M., Buhrow S.A., Kaestner K.H., Christy R.J., Sibley E., Kelly T.J., Lane M.D. Differentiation-induced gene expression in 3T3-L1 preadipocytes: characterization of differentially expressed gene encoding stearoyl-CoA desaturase. J. Biol. Chem. 263:1988;17291-17300
19. Ntambi J.M., Miyazaki M., Stoehr J.P., Lan H., Kendziorski C.M., Yandell B.S., Song Y., Cohen P., Friedman J.M., Attie A.D. Loss of stearoyl-CoA desaturase protects mice against adiposity. Proc. Natl. Acad. Sci. U. S. A. 99:2002;11482-11486
20. Ostareck-Lederer A., Ostareck D.H., Standart N., Thiele B.J. Translation of 15-lipooxygenase mRNA is inhibited by a protein that binds to a repeat sequence in the 3′ untranslated region. EMBO J. 13:1994;1476-1481
21. Polley S.D., Tiku P.E., Trueman R.T., Caddick M.X., Morozov I.Y., Cossins A.R. Differential expression of cold- and diet-specific genes encoding two carp liver δ9-acyl-CoA desaturase isoforms. Am. J. Physiol., Regul. Integr. Comp. Physiol. 284:2003;R41-R50
22. Ren J., Knorr C., Habermann F.A., Fries R., Huang L.S., Brenig B. Assignment of the porcine stearoyl-CoA desaturase (SCD) gene to SSC14q27 by fluorescence in situ hybridization and by hybrid panel mapping. Anim. Genet. 34:2003;471-473
23. Ren J., Knorr C., Guo Y.M., Ding N.S., Ai H.S., Brenig B., Huang L.S. Characterization of five single nucleotide polymorphisms in the porcine stearoyl-CoA desaturase (SCD) gene. Anim. Genet. 35:2004;255-257
24. Richter J.D. Cytoplasmic polyadenylation in development and beyond. Microbiol. Mol. Biol. Rev. 63:1999;446-456
25. Shanklin J., Whittle E., Fox B.G. Eight histidine residues are catalytic essential in a membrane-associated iron enzyme stearoyl-CoA desaturase and are conserved in alkaline hydroxylase and xylene monooxygenase. Biochemistry. 33:1994;12787-12794
26. Stukey J.E., McDonough V.M., Martin C.E. The OLE1 gene of Saccharomyces cervisiae encodes the δ9 fatty acid desaturase and can be functionally replaced by the rat stearoyl-CoA desaturase gene. J. Biol. Chem. 266:1990;20144
27. Vignal A., Milan D., SanCristobal M., Eggen A. A review on SNP and the other type of molecular markers and their use in animal genetics. Genet. Sel. Evol. 34:2002;275-305
28. Ward R.J., Travers M.T., Richards S.E., Vernon R.G., Salter A.M., Buttery P.J., Barber M.C. Stearoyl-CoA desaturase mRNA is transcribed from a single gene in the ovine genome. Biochim. Biophys. Acta. 1391:1998;145-156
29. Waters K.M., Miller C.W., Ntambi J.M. Localization of a polyunsaturated fatty acid response region in stearoyl-CoA desaturase gene 1. Biochim. Biophys. Acta. 1349:1997;33-42
30. Xu N., Chen C.Y., Shyu A.B. Modulation of the fate of cytoplasmic mRNA by AU-rich elements: key sequence features controlling mRNA deadenylation and decay. Mol. Cell. Biol. 17:1997;4611-4621
31. Yahyaoui M.H., Sanchez A., Folch J.M. Partial nucleotide sequence of the goat stearoyl coenzyme A desaturase cDNA and gene structure. J. Anim. Sci. 80:2002;866-867
32. Zhang L., Ge L., Parimoo S., Stenn K., Prouty S.M. Human stearoyl-CoA desaturse: alternative transcripts generated from a single gene by usage of tandem polyadenylation sites. Biochem. J. 340:1999;255-264
33. Zhang L., Ge L., Tran T., Stenn K., Prouty S.M. Isolation and characterization of the human stearoyl-CoA desaturase gene promoter: requirement of a conserved CCAAT cis-element. Biochem. J. 357:2001;183-193
34. Zheng Y., Prouty S.M., Harmon A., Sundberg J.P., Stenn K., Parimoo S. Scd3-A novel gene of the stearoyl-CoA desaturase family with restricted expression in skin. Genomics. 71:2001;182-191