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Volumn 42, Issue 20, 2008, Pages 7580-7586

Assessing soil microbial populations responding to crude-oil amendment at different temperatures using phylogenetic, functional gene (alkB) and physiological analyses

Author keywords

[No Author keywords available]

Indexed keywords

CLONING; COLLOIDS; DEGRADATION; DIFFERENTIATION (CALCULUS); ELECTROPHORESIS; GELATION; GENETIC ENGINEERING; HYDROCARBONS; OIL WELL PRODUCTION; PARAFFINS; SOILS; BACTERIA; CARBON DIOXIDE; CRUDE OIL; RNA; TEMPERATURE;

EID: 54349118397     PISSN: 0013936X     EISSN: None     Source Type: Journal    
DOI: 10.1021/es800030f     Document Type: Article
Times cited : (52)

References (36)
  • 1
    • 0019431376 scopus 로고
    • Microbial degradation of petroleum hydrocarbons: An environmental perspective
    • Atlas, R. M. Microbial degradation of petroleum hydrocarbons: an environmental perspective. Microbiol. Rev. 1981, 45, 180-209.
    • (1981) Microbiol. Rev , vol.45 , pp. 180-209
    • Atlas, R.M.1
  • 2
    • 0034840415 scopus 로고    scopus 로고
    • Biodegradation and bioremediation of hydrocarbons in extreme environments
    • Margesin, R.; Schinner, F. Biodegradation and bioremediation of hydrocarbons in extreme environments. Appl. Microbiol. Biotechnol. 2001, 56, 650-663.
    • (2001) Appl. Microbiol. Biotechnol , vol.56 , pp. 650-663
    • Margesin, R.1    Schinner, F.2
  • 3
    • 0031194647 scopus 로고    scopus 로고
    • Enhancement and inhibition of microbial activity in hydrocarbon-contaminated arctic soils: Implications for nutrient-amended bioremediation
    • Braddock, J. F.; Ruth, M. L.; Walworth, J. L.; MaCarthy, K. A. Enhancement and inhibition of microbial activity in hydrocarbon-contaminated arctic soils: implications for nutrient-amended bioremediation. Environ. Sci. Technol. 1997, 31, 2078-2084.
    • (1997) Environ. Sci. Technol , vol.31 , pp. 2078-2084
    • Braddock, J.F.1    Ruth, M.L.2    Walworth, J.L.3    MaCarthy, K.A.4
  • 4
    • 0001920809 scopus 로고    scopus 로고
    • Bioremediation assessment of hydrocarbon-contaminated soils from the high Arctic
    • Whyte, L. G.; Bourbonniere, L.; Bellerose, C.; Greer, C. W. Bioremediation assessment of hydrocarbon-contaminated soils from the high Arctic. Biorem. J. 1999, 3, 69-79.
    • (1999) Biorem. J , vol.3 , pp. 69-79
    • Whyte, L.G.1    Bourbonniere, L.2    Bellerose, C.3    Greer, C.W.4
  • 5
    • 3442894709 scopus 로고    scopus 로고
    • Degradation of petroleum hydrocarbons in two sub-antarctic soils: Influence of an oleophilic fertilizer
    • Coulon, F.; Pelletier, E.; Louise, R. S.; Gourhant, L.; Delille, D. Degradation of petroleum hydrocarbons in two sub-antarctic soils: influence of an oleophilic fertilizer. Environ. Toxicol. Chem. 2004, 23, 1893-1901.
    • (2004) Environ. Toxicol. Chem , vol.23 , pp. 1893-1901
    • Coulon, F.1    Pelletier, E.2    Louise, R.S.3    Gourhant, L.4    Delille, D.5
  • 6
    • 0031885593 scopus 로고    scopus 로고
    • Potential for biodegradation of hydrocarbons in soil from the Ross Dependency, Antarctica
    • Aislabie, J.; McLeod, M.; Fraser, R. Potential for biodegradation of hydrocarbons in soil from the Ross Dependency, Antarctica. Appl. Microbiol. Biotechnol. 1998, 49, 210-214.
    • (1998) Appl. Microbiol. Biotechnol , vol.49 , pp. 210-214
    • Aislabie, J.1    McLeod, M.2    Fraser, R.3
  • 7
    • 0038317584 scopus 로고    scopus 로고
    • Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine Alpine soils
    • Margesin, R.; Labbé, D.; Schinner, F.; Greer, C. W.; Whyte, L. G. Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine Alpine soils. Appl. Environ. Microbiol. 2003, 69, 3985-3092.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 3985-3092
    • Margesin, R.1    Labbé, D.2    Schinner, F.3    Greer, C.W.4    Whyte, L.G.5
  • 8
    • 0035408592 scopus 로고    scopus 로고
    • Bioremediation (natural attenuation and biostimulation) of diesel-oil-contaminated soil in an alpine glacier skiing area
    • Margesin, R.; Schinner, F. Bioremediation (natural attenuation and biostimulation) of diesel-oil-contaminated soil in an alpine glacier skiing area. Appl. Environ. Microbiol. 2001, 67, 3127-3133.
    • (2001) Appl. Environ. Microbiol , vol.67 , pp. 3127-3133
    • Margesin, R.1    Schinner, F.2
  • 9
    • 33846185425 scopus 로고    scopus 로고
    • Comparative phylogenetic analysis of microbial communities in pristine and hydrocarbon-contaminated Alpine soils
    • Labbé, D.; Margesin, R.; Schinner, F.; Whyte, L. G.; Greer, C. W. Comparative phylogenetic analysis of microbial communities in pristine and hydrocarbon-contaminated Alpine soils. FEMS Microbiol. Ecol. 2007, 59, 466-475.
    • (2007) FEMS Microbiol. Ecol , vol.59 , pp. 466-475
    • Labbé, D.1    Margesin, R.2    Schinner, F.3    Whyte, L.G.4    Greer, C.W.5
  • 10
    • 33846072571 scopus 로고    scopus 로고
    • Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters
    • Coulon, F.; McKew, B. A.; Osborn, A. M.; McGenity, T. J.; Timmis, K. N. Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environ. Microbiol. 2007, 9, 177-186.
    • (2007) Environ. Microbiol , vol.9 , pp. 177-186
    • Coulon, F.1    McKew, B.A.2    Osborn, A.M.3    McGenity, T.J.4    Timmis, K.N.5
  • 11
    • 0033850347 scopus 로고    scopus 로고
    • Distribution of alkB genes within n-alkane-degrading bacteria
    • Vomberg, A.; Klinner, U. Distribution of alkB genes within n-alkane-degrading bacteria. J. Appl. Microbiol. 2000, 89, 339-348.
    • (2000) J. Appl. Microbiol , vol.89 , pp. 339-348
    • Vomberg, A.1    Klinner, U.2
  • 12
    • 0036342960 scopus 로고    scopus 로고
    • Prevalence of alkane monooxygenase genes in Arctic and Antarctic hydrocarbon-contaminated and pristine soils
    • Whyte, L. G.; Schultz, A.; van Beilen, J. B.; Luz, A. P.; Pellizari, V.; Labbé, D.; Greer, C. W. Prevalence of alkane monooxygenase genes in Arctic and Antarctic hydrocarbon-contaminated and pristine soils. FEMS Microbiol. Ecol. 2002, 41, 141-150.
    • (2002) FEMS Microbiol. Ecol , vol.41 , pp. 141-150
    • Whyte, L.G.1    Schultz, A.2    van Beilen, J.B.3    Luz, A.P.4    Pellizari, V.5    Labbé, D.6    Greer, C.W.7
  • 13
    • 0038384754 scopus 로고    scopus 로고
    • Design of PCR primers and gene probes for general detection of alkane-degrading bacteria
    • Kohno, T.; Sugimoto, Y.; Sei, K.; Mori, K. Design of PCR primers and gene probes for general detection of alkane-degrading bacteria. Microbes Environ. 2002, 17, 114-121.
    • (2002) Microbes Environ , vol.17 , pp. 114-121
    • Kohno, T.1    Sugimoto, Y.2    Sei, K.3    Mori, K.4
  • 14
    • 0033171433 scopus 로고    scopus 로고
    • Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strains
    • Smits, T. H. M.; Röthlisberger, M.; Witholt, B.; van Beilen, J. B. Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strains. Environ. Microbiol. 1999, 1, 307-317.
    • (1999) Environ. Microbiol , vol.1 , pp. 307-317
    • Smits, T.H.M.1    Röthlisberger, M.2    Witholt, B.3    van Beilen, J.B.4
  • 15
    • 0031734089 scopus 로고    scopus 로고
    • Molecular detection, isolation, and physiological characterization of functionally dominant phenol-degrading bacteria in activated sludge
    • Watanabe, K.; Teramoto, M.; Futamata, H.; Harayama, S. Molecular detection, isolation, and physiological characterization of functionally dominant phenol-degrading bacteria in activated sludge. Appl. Environ. Microbiol. 1998, 64, 4396-4402.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 4396-4402
    • Watanabe, K.1    Teramoto, M.2    Futamata, H.3    Harayama, S.4
  • 16
    • 0037641131 scopus 로고    scopus 로고
    • Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR
    • Baldwin, B. R.; Nakatsu, C. H.; Nies, L. Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR. Appl. Environ. Microbiol. 2003, 69, 3350-3358.
    • (2003) Appl. Environ. Microbiol , vol.69 , pp. 3350-3358
    • Baldwin, B.R.1    Nakatsu, C.H.2    Nies, L.3
  • 17
    • 28444466634 scopus 로고    scopus 로고
    • Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive, PCR
    • Heiss-Blanquet, S.; Benoit, Y.; Maréchaux, C.; Monot, F.; Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive, PCR. J. Appl. Microbiol. 2005, 99, 1392-1403.
    • (2005) J. Appl. Microbiol , vol.99 , pp. 1392-1403
    • Heiss-Blanquet, S.1    Benoit, Y.2    Maréchaux, C.3    Monot, F.4
  • 18
    • 3442891491 scopus 로고    scopus 로고
    • A survey of indigenous microbial hydrocarbon degradation genes in soils from Antarctica and Brazil
    • Luz, A. P.; Pellizari, V. H.; Whyte, L. G.; Greer, C. W. A survey of indigenous microbial hydrocarbon degradation genes in soils from Antarctica and Brazil. Can. J. Microbiol. 2004, 50, 323-333.
    • (2004) Can. J. Microbiol , vol.50 , pp. 323-333
    • Luz, A.P.1    Pellizari, V.H.2    Whyte, L.G.3    Greer, C.W.4
  • 19
    • 33748796867 scopus 로고    scopus 로고
    • Microbial population dynamics associated with crude-oil biodegradation in diverse soils
    • Hamamura, N.; Olson, S. H.; Ward, D. M.; Inskeep, W. P. Microbial population dynamics associated with crude-oil biodegradation in diverse soils. Appl. Environ. Microbiol. 2006, 72, 6316-6324.
    • (2006) Appl. Environ. Microbiol , vol.72 , pp. 6316-6324
    • Hamamura, N.1    Olson, S.H.2    Ward, D.M.3    Inskeep, W.P.4
  • 20
    • 0033930975 scopus 로고    scopus 로고
    • Effect of model sorptive phase on phenanthrene biodegradation: Different enrichment conditions influence bioavailability and selection of phenanthrene-degrading isolates
    • Grosser, R. J.; Friedrich, M.; Ward, D. M.; Inskeep, W. P. Effect of model sorptive phase on phenanthrene biodegradation: different enrichment conditions influence bioavailability and selection of phenanthrene-degrading isolates. Appl. Environ. Microbiol. 2000, 66, 2695-2702.
    • (2000) Appl. Environ. Microbiol , vol.66 , pp. 2695-2702
    • Grosser, R.J.1    Friedrich, M.2    Ward, D.M.3    Inskeep, W.P.4
  • 21
    • 26844561468 scopus 로고    scopus 로고
    • Diversity and functional analysis of bacterial communities associated with natural hydrocarbon seeps in acidic soils at Rainbow Springs, Yellowstone National Park
    • Hamamura, N.; Olson, S. H.; Ward, D. M.; Inskeep, W. P. Diversity and functional analysis of bacterial communities associated with natural hydrocarbon seeps in acidic soils at Rainbow Springs, Yellowstone National Park. Appl. Environ. Microbiol. 2005, 71, 5943-5950.
    • (2005) Appl. Environ. Microbiol , vol.71 , pp. 5943-5950
    • Hamamura, N.1    Olson, S.H.2    Ward, D.M.3    Inskeep, W.P.4
  • 22
    • 0031574072 scopus 로고    scopus 로고
    • The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson, J. D.; Gibson, T. J.; Plewniak, F.; Jeanmougin, F.; Higgins, D. G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25, 4876-4882.
    • (1997) Nucleic Acids Res , vol.25 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 24
    • 0030063913 scopus 로고    scopus 로고
    • Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
    • Ferris, M. J.; Muyzer, G.; Ward, D. M. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 1996, 62, 340-346.
    • (1996) Appl. Environ. Microbiol , vol.62 , pp. 340-346
    • Ferris, M.J.1    Muyzer, G.2    Ward, D.M.3
  • 25
    • 0000732090 scopus 로고
    • Evolution of protein molecules
    • Munro, H. N, Ed, Academic Presslnc: New York, N.Y
    • Jukes, T. H.; Cantor, C. R. Evolution of protein molecules. In Mammalian Protein Metabolism; Munro, H. N., Ed.; Academic Presslnc: New York, N.Y., 1969; pp 21-132.
    • (1969) Mammalian Protein Metabolism , pp. 21-132
    • Jukes, T.H.1    Cantor, C.R.2
  • 26
    • 0023375195 scopus 로고
    • The neighbor-joining method: A new method for reconstructing phylogenetic trees
    • Saitou, N.; Nei, M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4, 406-425.
    • (1987) Mol. Biol. Evol , vol.4 , pp. 406-425
    • Saitou, N.1    Nei, M.2
  • 27
    • 0031840829 scopus 로고    scopus 로고
    • Biodegradation of variable-chain-length alkanes at low temperatures by a psychrotrophic Rhodococcus sp
    • Whyte, L. G.; Hawari, J.; Zhou, E.; Bourbonnière, L.; Inniss, W. E.; Greer, C. W. Biodegradation of variable-chain-length alkanes at low temperatures by a psychrotrophic Rhodococcus sp. Appl. Environ. Microbiol. 1998, 64, 2578-2584.
    • (1998) Appl. Environ. Microbiol , vol.64 , pp. 2578-2584
    • Whyte, L.G.1    Hawari, J.2    Zhou, E.3    Bourbonnière, L.4    Inniss, W.E.5    Greer, C.W.6
  • 28
    • 85011174310 scopus 로고
    • Microbiological studies on petroleum and natural gas. I. Determination of hydrocarbon-utilizing bacteria
    • Iizuka, H.; Komagata, K. Microbiological studies on petroleum and natural gas. I. Determination of hydrocarbon-utilizing bacteria. J. Gen. Appl. Microbiol. 1964, 10, 207-221.
    • (1964) J. Gen. Appl. Microbiol , vol.10 , pp. 207-221
    • Iizuka, H.1    Komagata, K.2
  • 32
    • 0035719903 scopus 로고    scopus 로고
    • DNA-based and culture-based characterization of a hydrocarbon-degrading consortium enriched from Arctic soil
    • Thomassin-Lacroix, E. J. M.; Yu, Z.; Eriksson, M.; Reimer, K. J.; Mohn, W. W. DNA-based and culture-based characterization of a hydrocarbon-degrading consortium enriched from Arctic soil. Can. J. Microbiol. 2001, 47, 1107-1115.
    • (2001) Can. J. Microbiol , vol.47 , pp. 1107-1115
    • Thomassin-Lacroix, E.J.M.1    Yu, Z.2    Eriksson, M.3    Reimer, K.J.4    Mohn, W.W.5
  • 33
    • 0242669334 scopus 로고    scopus 로고
    • Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531
    • Whyte, L. G.; Smits, T. H. M.; Labbé, D.; Witholt, B.; Greer, C. W.; van Beilen, J. B. Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531. Appl. Environ. Microbiol. 2002, 68, 5933-5942.
    • (2002) Appl. Environ. Microbiol , vol.68 , pp. 5933-5942
    • Whyte, L.G.1    Smits, T.H.M.2    Labbé, D.3    Witholt, B.4    Greer, C.W.5    van Beilen, J.B.6
  • 34
    • 34247884459 scopus 로고    scopus 로고
    • A systematics for discovering the fundamental units of bacterial diversity
    • Cohan, F. M.; Perry, E. B. A systematics for discovering the fundamental units of bacterial diversity. Curr. Biol. 2007, 17, R373-R386.
    • (2007) Curr. Biol , vol.17
    • Cohan, F.M.1    Perry, E.B.2
  • 35
    • 33751210106 scopus 로고    scopus 로고
    • Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function
    • Ward, D. M.; Bateson, M. M.; Ferris, M. J.; Kuhl, M.; Wieland, A.; Koepple, A.; Cohan, F. M. Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function. Philos. Trans. R. Soc. London, Ser. B 2006, 361, 1997-2008.
    • (2006) Philos. Trans. R. Soc. London, Ser. B , vol.361 , pp. 1997-2008
    • Ward, D.M.1    Bateson, M.M.2    Ferris, M.J.3    Kuhl, M.4    Wieland, A.5    Koepple, A.6    Cohan, F.M.7


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