-
1
-
-
0019431376
-
Microbial degradation of petroleum hydrocarbons: An environmental perspective
-
Atlas, R. M. Microbial degradation of petroleum hydrocarbons: an environmental perspective. Microbiol. Rev. 1981, 45, 180-209.
-
(1981)
Microbiol. Rev
, vol.45
, pp. 180-209
-
-
Atlas, R.M.1
-
2
-
-
0034840415
-
Biodegradation and bioremediation of hydrocarbons in extreme environments
-
Margesin, R.; Schinner, F. Biodegradation and bioremediation of hydrocarbons in extreme environments. Appl. Microbiol. Biotechnol. 2001, 56, 650-663.
-
(2001)
Appl. Microbiol. Biotechnol
, vol.56
, pp. 650-663
-
-
Margesin, R.1
Schinner, F.2
-
3
-
-
0031194647
-
Enhancement and inhibition of microbial activity in hydrocarbon-contaminated arctic soils: Implications for nutrient-amended bioremediation
-
Braddock, J. F.; Ruth, M. L.; Walworth, J. L.; MaCarthy, K. A. Enhancement and inhibition of microbial activity in hydrocarbon-contaminated arctic soils: implications for nutrient-amended bioremediation. Environ. Sci. Technol. 1997, 31, 2078-2084.
-
(1997)
Environ. Sci. Technol
, vol.31
, pp. 2078-2084
-
-
Braddock, J.F.1
Ruth, M.L.2
Walworth, J.L.3
MaCarthy, K.A.4
-
4
-
-
0001920809
-
Bioremediation assessment of hydrocarbon-contaminated soils from the high Arctic
-
Whyte, L. G.; Bourbonniere, L.; Bellerose, C.; Greer, C. W. Bioremediation assessment of hydrocarbon-contaminated soils from the high Arctic. Biorem. J. 1999, 3, 69-79.
-
(1999)
Biorem. J
, vol.3
, pp. 69-79
-
-
Whyte, L.G.1
Bourbonniere, L.2
Bellerose, C.3
Greer, C.W.4
-
5
-
-
3442894709
-
Degradation of petroleum hydrocarbons in two sub-antarctic soils: Influence of an oleophilic fertilizer
-
Coulon, F.; Pelletier, E.; Louise, R. S.; Gourhant, L.; Delille, D. Degradation of petroleum hydrocarbons in two sub-antarctic soils: influence of an oleophilic fertilizer. Environ. Toxicol. Chem. 2004, 23, 1893-1901.
-
(2004)
Environ. Toxicol. Chem
, vol.23
, pp. 1893-1901
-
-
Coulon, F.1
Pelletier, E.2
Louise, R.S.3
Gourhant, L.4
Delille, D.5
-
6
-
-
0031885593
-
Potential for biodegradation of hydrocarbons in soil from the Ross Dependency, Antarctica
-
Aislabie, J.; McLeod, M.; Fraser, R. Potential for biodegradation of hydrocarbons in soil from the Ross Dependency, Antarctica. Appl. Microbiol. Biotechnol. 1998, 49, 210-214.
-
(1998)
Appl. Microbiol. Biotechnol
, vol.49
, pp. 210-214
-
-
Aislabie, J.1
McLeod, M.2
Fraser, R.3
-
7
-
-
0038317584
-
Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine Alpine soils
-
Margesin, R.; Labbé, D.; Schinner, F.; Greer, C. W.; Whyte, L. G. Characterization of hydrocarbon-degrading microbial populations in contaminated and pristine Alpine soils. Appl. Environ. Microbiol. 2003, 69, 3985-3092.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 3985-3092
-
-
Margesin, R.1
Labbé, D.2
Schinner, F.3
Greer, C.W.4
Whyte, L.G.5
-
8
-
-
0035408592
-
Bioremediation (natural attenuation and biostimulation) of diesel-oil-contaminated soil in an alpine glacier skiing area
-
Margesin, R.; Schinner, F. Bioremediation (natural attenuation and biostimulation) of diesel-oil-contaminated soil in an alpine glacier skiing area. Appl. Environ. Microbiol. 2001, 67, 3127-3133.
-
(2001)
Appl. Environ. Microbiol
, vol.67
, pp. 3127-3133
-
-
Margesin, R.1
Schinner, F.2
-
9
-
-
33846185425
-
Comparative phylogenetic analysis of microbial communities in pristine and hydrocarbon-contaminated Alpine soils
-
Labbé, D.; Margesin, R.; Schinner, F.; Whyte, L. G.; Greer, C. W. Comparative phylogenetic analysis of microbial communities in pristine and hydrocarbon-contaminated Alpine soils. FEMS Microbiol. Ecol. 2007, 59, 466-475.
-
(2007)
FEMS Microbiol. Ecol
, vol.59
, pp. 466-475
-
-
Labbé, D.1
Margesin, R.2
Schinner, F.3
Whyte, L.G.4
Greer, C.W.5
-
10
-
-
33846072571
-
Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters
-
Coulon, F.; McKew, B. A.; Osborn, A. M.; McGenity, T. J.; Timmis, K. N. Effects of temperature and biostimulation on oil-degrading microbial communities in temperate estuarine waters. Environ. Microbiol. 2007, 9, 177-186.
-
(2007)
Environ. Microbiol
, vol.9
, pp. 177-186
-
-
Coulon, F.1
McKew, B.A.2
Osborn, A.M.3
McGenity, T.J.4
Timmis, K.N.5
-
11
-
-
0033850347
-
Distribution of alkB genes within n-alkane-degrading bacteria
-
Vomberg, A.; Klinner, U. Distribution of alkB genes within n-alkane-degrading bacteria. J. Appl. Microbiol. 2000, 89, 339-348.
-
(2000)
J. Appl. Microbiol
, vol.89
, pp. 339-348
-
-
Vomberg, A.1
Klinner, U.2
-
12
-
-
0036342960
-
Prevalence of alkane monooxygenase genes in Arctic and Antarctic hydrocarbon-contaminated and pristine soils
-
Whyte, L. G.; Schultz, A.; van Beilen, J. B.; Luz, A. P.; Pellizari, V.; Labbé, D.; Greer, C. W. Prevalence of alkane monooxygenase genes in Arctic and Antarctic hydrocarbon-contaminated and pristine soils. FEMS Microbiol. Ecol. 2002, 41, 141-150.
-
(2002)
FEMS Microbiol. Ecol
, vol.41
, pp. 141-150
-
-
Whyte, L.G.1
Schultz, A.2
van Beilen, J.B.3
Luz, A.P.4
Pellizari, V.5
Labbé, D.6
Greer, C.W.7
-
13
-
-
0038384754
-
Design of PCR primers and gene probes for general detection of alkane-degrading bacteria
-
Kohno, T.; Sugimoto, Y.; Sei, K.; Mori, K. Design of PCR primers and gene probes for general detection of alkane-degrading bacteria. Microbes Environ. 2002, 17, 114-121.
-
(2002)
Microbes Environ
, vol.17
, pp. 114-121
-
-
Kohno, T.1
Sugimoto, Y.2
Sei, K.3
Mori, K.4
-
14
-
-
0033171433
-
Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strains
-
Smits, T. H. M.; Röthlisberger, M.; Witholt, B.; van Beilen, J. B. Molecular screening for alkane hydroxylase genes in Gram-negative and Gram-positive strains. Environ. Microbiol. 1999, 1, 307-317.
-
(1999)
Environ. Microbiol
, vol.1
, pp. 307-317
-
-
Smits, T.H.M.1
Röthlisberger, M.2
Witholt, B.3
van Beilen, J.B.4
-
15
-
-
0031734089
-
Molecular detection, isolation, and physiological characterization of functionally dominant phenol-degrading bacteria in activated sludge
-
Watanabe, K.; Teramoto, M.; Futamata, H.; Harayama, S. Molecular detection, isolation, and physiological characterization of functionally dominant phenol-degrading bacteria in activated sludge. Appl. Environ. Microbiol. 1998, 64, 4396-4402.
-
(1998)
Appl. Environ. Microbiol
, vol.64
, pp. 4396-4402
-
-
Watanabe, K.1
Teramoto, M.2
Futamata, H.3
Harayama, S.4
-
16
-
-
0037641131
-
Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR
-
Baldwin, B. R.; Nakatsu, C. H.; Nies, L. Detection and enumeration of aromatic oxygenase genes by multiplex and real-time PCR. Appl. Environ. Microbiol. 2003, 69, 3350-3358.
-
(2003)
Appl. Environ. Microbiol
, vol.69
, pp. 3350-3358
-
-
Baldwin, B.R.1
Nakatsu, C.H.2
Nies, L.3
-
17
-
-
28444466634
-
Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive, PCR
-
Heiss-Blanquet, S.; Benoit, Y.; Maréchaux, C.; Monot, F.; Assessing the role of alkane hydroxylase genotypes in environmental samples by competitive, PCR. J. Appl. Microbiol. 2005, 99, 1392-1403.
-
(2005)
J. Appl. Microbiol
, vol.99
, pp. 1392-1403
-
-
Heiss-Blanquet, S.1
Benoit, Y.2
Maréchaux, C.3
Monot, F.4
-
18
-
-
3442891491
-
A survey of indigenous microbial hydrocarbon degradation genes in soils from Antarctica and Brazil
-
Luz, A. P.; Pellizari, V. H.; Whyte, L. G.; Greer, C. W. A survey of indigenous microbial hydrocarbon degradation genes in soils from Antarctica and Brazil. Can. J. Microbiol. 2004, 50, 323-333.
-
(2004)
Can. J. Microbiol
, vol.50
, pp. 323-333
-
-
Luz, A.P.1
Pellizari, V.H.2
Whyte, L.G.3
Greer, C.W.4
-
19
-
-
33748796867
-
Microbial population dynamics associated with crude-oil biodegradation in diverse soils
-
Hamamura, N.; Olson, S. H.; Ward, D. M.; Inskeep, W. P. Microbial population dynamics associated with crude-oil biodegradation in diverse soils. Appl. Environ. Microbiol. 2006, 72, 6316-6324.
-
(2006)
Appl. Environ. Microbiol
, vol.72
, pp. 6316-6324
-
-
Hamamura, N.1
Olson, S.H.2
Ward, D.M.3
Inskeep, W.P.4
-
20
-
-
0033930975
-
Effect of model sorptive phase on phenanthrene biodegradation: Different enrichment conditions influence bioavailability and selection of phenanthrene-degrading isolates
-
Grosser, R. J.; Friedrich, M.; Ward, D. M.; Inskeep, W. P. Effect of model sorptive phase on phenanthrene biodegradation: different enrichment conditions influence bioavailability and selection of phenanthrene-degrading isolates. Appl. Environ. Microbiol. 2000, 66, 2695-2702.
-
(2000)
Appl. Environ. Microbiol
, vol.66
, pp. 2695-2702
-
-
Grosser, R.J.1
Friedrich, M.2
Ward, D.M.3
Inskeep, W.P.4
-
21
-
-
26844561468
-
Diversity and functional analysis of bacterial communities associated with natural hydrocarbon seeps in acidic soils at Rainbow Springs, Yellowstone National Park
-
Hamamura, N.; Olson, S. H.; Ward, D. M.; Inskeep, W. P. Diversity and functional analysis of bacterial communities associated with natural hydrocarbon seeps in acidic soils at Rainbow Springs, Yellowstone National Park. Appl. Environ. Microbiol. 2005, 71, 5943-5950.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 5943-5950
-
-
Hamamura, N.1
Olson, S.H.2
Ward, D.M.3
Inskeep, W.P.4
-
22
-
-
0031574072
-
The ClustalX windows interface: Flexible strategies for multiple sequence alignment aided by quality analysis tools
-
Thompson, J. D.; Gibson, T. J.; Plewniak, F.; Jeanmougin, F.; Higgins, D. G. The ClustalX windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 1997, 25, 4876-4882.
-
(1997)
Nucleic Acids Res
, vol.25
, pp. 4876-4882
-
-
Thompson, J.D.1
Gibson, T.J.2
Plewniak, F.3
Jeanmougin, F.4
Higgins, D.G.5
-
23
-
-
0025183708
-
Basic local alignment search tool
-
Altschul, S. F.; Gish, W.; Miller, W.; Myers, E. W.; Lipman, D. J. Basic local alignment search tool. J. Mol. Biol. 1990, 215, 403-410.
-
(1990)
J. Mol. Biol
, vol.215
, pp. 403-410
-
-
Altschul, S.F.1
Gish, W.2
Miller, W.3
Myers, E.W.4
Lipman, D.J.5
-
24
-
-
0030063913
-
Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community
-
Ferris, M. J.; Muyzer, G.; Ward, D. M. Denaturing gradient gel electrophoresis profiles of 16S rRNA-defined populations inhabiting a hot spring microbial mat community. Appl. Environ. Microbiol. 1996, 62, 340-346.
-
(1996)
Appl. Environ. Microbiol
, vol.62
, pp. 340-346
-
-
Ferris, M.J.1
Muyzer, G.2
Ward, D.M.3
-
25
-
-
0000732090
-
Evolution of protein molecules
-
Munro, H. N, Ed, Academic Presslnc: New York, N.Y
-
Jukes, T. H.; Cantor, C. R. Evolution of protein molecules. In Mammalian Protein Metabolism; Munro, H. N., Ed.; Academic Presslnc: New York, N.Y., 1969; pp 21-132.
-
(1969)
Mammalian Protein Metabolism
, pp. 21-132
-
-
Jukes, T.H.1
Cantor, C.R.2
-
26
-
-
0023375195
-
The neighbor-joining method: A new method for reconstructing phylogenetic trees
-
Saitou, N.; Nei, M. The neighbor-joining method: A new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 1987, 4, 406-425.
-
(1987)
Mol. Biol. Evol
, vol.4
, pp. 406-425
-
-
Saitou, N.1
Nei, M.2
-
27
-
-
0031840829
-
Biodegradation of variable-chain-length alkanes at low temperatures by a psychrotrophic Rhodococcus sp
-
Whyte, L. G.; Hawari, J.; Zhou, E.; Bourbonnière, L.; Inniss, W. E.; Greer, C. W. Biodegradation of variable-chain-length alkanes at low temperatures by a psychrotrophic Rhodococcus sp. Appl. Environ. Microbiol. 1998, 64, 2578-2584.
-
(1998)
Appl. Environ. Microbiol
, vol.64
, pp. 2578-2584
-
-
Whyte, L.G.1
Hawari, J.2
Zhou, E.3
Bourbonnière, L.4
Inniss, W.E.5
Greer, C.W.6
-
28
-
-
85011174310
-
Microbiological studies on petroleum and natural gas. I. Determination of hydrocarbon-utilizing bacteria
-
Iizuka, H.; Komagata, K. Microbiological studies on petroleum and natural gas. I. Determination of hydrocarbon-utilizing bacteria. J. Gen. Appl. Microbiol. 1964, 10, 207-221.
-
(1964)
J. Gen. Appl. Microbiol
, vol.10
, pp. 207-221
-
-
Iizuka, H.1
Komagata, K.2
-
29
-
-
18744416524
-
Alkane hydroxylase homologues in Gram-positive strains
-
van Beilen, J. B.; Smits, T. H. M.; Whyte, L. G.; Schorcht, S.; Röthlisberger, M.; Plaggemeier, T.; Engesser, K.-H.; Witholt, B. Alkane hydroxylase homologues in Gram-positive strains. Environ. Microbiol. 2002, 4, 676-682.
-
(2002)
Environ. Microbiol
, vol.4
, pp. 676-682
-
-
van Beilen, J.B.1
Smits, T.H.M.2
Whyte, L.G.3
Schorcht, S.4
Röthlisberger, M.5
Plaggemeier, T.6
Engesser, K.-H.7
Witholt, B.8
-
30
-
-
0034519092
-
Pseudomonas frederiksbergensis sp. nov., isolated from soil at a coal gasification site
-
Andersen, S. M.; Johnsen, K.; Sorensen, J.; Nielsen, P.; Jacobsen, C. S. Pseudomonas frederiksbergensis sp. nov., isolated from soil at a coal gasification site. Int. J. Syst. Evol. Microbiol. 2000, 50, 1957-1964.
-
(2000)
Int. J. Syst. Evol. Microbiol
, vol.50
, pp. 1957-1964
-
-
Andersen, S.M.1
Johnsen, K.2
Sorensen, J.3
Nielsen, P.4
Jacobsen, C.S.5
-
31
-
-
0024536161
-
The Pseudomonas oleovorans alkane hydroxylase gene. Sequence and expression
-
Kok, M.; Oldenhuis, R.; van der Linden, M. P. G.; Raaties, P.; Kingma, J.; van Lelyveld, P. H.; Witholt, B. The Pseudomonas oleovorans alkane hydroxylase gene. Sequence and expression. J. Biol. Chem. 1989, 264, 5435-5441.
-
(1989)
J. Biol. Chem
, vol.264
, pp. 5435-5441
-
-
Kok, M.1
Oldenhuis, R.2
van der Linden, M.P.G.3
Raaties, P.4
Kingma, J.5
van Lelyveld, P.H.6
Witholt, B.7
-
32
-
-
0035719903
-
DNA-based and culture-based characterization of a hydrocarbon-degrading consortium enriched from Arctic soil
-
Thomassin-Lacroix, E. J. M.; Yu, Z.; Eriksson, M.; Reimer, K. J.; Mohn, W. W. DNA-based and culture-based characterization of a hydrocarbon-degrading consortium enriched from Arctic soil. Can. J. Microbiol. 2001, 47, 1107-1115.
-
(2001)
Can. J. Microbiol
, vol.47
, pp. 1107-1115
-
-
Thomassin-Lacroix, E.J.M.1
Yu, Z.2
Eriksson, M.3
Reimer, K.J.4
Mohn, W.W.5
-
33
-
-
0242669334
-
Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531
-
Whyte, L. G.; Smits, T. H. M.; Labbé, D.; Witholt, B.; Greer, C. W.; van Beilen, J. B. Gene cloning and characterization of multiple alkane hydroxylase systems in Rhodococcus strains Q15 and NRRL B-16531. Appl. Environ. Microbiol. 2002, 68, 5933-5942.
-
(2002)
Appl. Environ. Microbiol
, vol.68
, pp. 5933-5942
-
-
Whyte, L.G.1
Smits, T.H.M.2
Labbé, D.3
Witholt, B.4
Greer, C.W.5
van Beilen, J.B.6
-
34
-
-
34247884459
-
A systematics for discovering the fundamental units of bacterial diversity
-
Cohan, F. M.; Perry, E. B. A systematics for discovering the fundamental units of bacterial diversity. Curr. Biol. 2007, 17, R373-R386.
-
(2007)
Curr. Biol
, vol.17
-
-
Cohan, F.M.1
Perry, E.B.2
-
35
-
-
33751210106
-
Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function
-
Ward, D. M.; Bateson, M. M.; Ferris, M. J.; Kuhl, M.; Wieland, A.; Koepple, A.; Cohan, F. M. Cyanobacterial ecotypes in the microbial mat community of Mushroom Spring (Yellowstone National Park, Wyoming) as species-like units linking microbial community composition, structure and function. Philos. Trans. R. Soc. London, Ser. B 2006, 361, 1997-2008.
-
(2006)
Philos. Trans. R. Soc. London, Ser. B
, vol.361
, pp. 1997-2008
-
-
Ward, D.M.1
Bateson, M.M.2
Ferris, M.J.3
Kuhl, M.4
Wieland, A.5
Koepple, A.6
Cohan, F.M.7
-
36
-
-
40649125049
-
Identifying the fundamental units of bacterial diversity: A paradigm shift to incorporate ecology into bacterial systematics
-
Koepple, A.; Perry, E. B.; Sikorski, J.; Krizanc, D.; Warner, A.; Ward, D. M.; Rooney, A. P.; Brambilla, E.; Connor, N.; Ratcliff, R. M.; Nevo, E.; Cohan, F. M. Identifying the fundamental units of bacterial diversity: a paradigm shift to incorporate ecology into bacterial systematics. Proc. Natl. Acad Sci. U. S. A. 2008, 105, 2504-2509.
-
(2008)
Proc. Natl. Acad Sci. U. S. A
, vol.105
, pp. 2504-2509
-
-
Koepple, A.1
Perry, E.B.2
Sikorski, J.3
Krizanc, D.4
Warner, A.5
Ward, D.M.6
Rooney, A.P.7
Brambilla, E.8
Connor, N.9
Ratcliff, R.M.10
Nevo, E.11
Cohan, F.M.12
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