Induction of ortho- and meta-cleavage pathways in Pseudomonas in biodegradation of high benzoate concentration: MS identification of catabolic enzymes

Applied Microbiology and Biotechnology

Volumn 81, Issue 1, 2008, Pages 99-107

  Cao, Bin ^a   Geng, Anli ^b   Loh, Kai Chee ^a  

^a NATIONAL UNIVERSITY OF SINGAPORE   (Singapore)

^b DEPARTMENT OF ELECTRONICS AND COMPUTER ENGINEERING   (Singapore)

Author keywords

2 DE; Benzoate biodegradation; MALDI TOF MS; Meta cleavage pathway; Ortho cleavage pathway; Pseudomonas putida

Indexed keywords

BIOCHEMISTRY; CATALYSTS; COLLOIDS; CONCENTRATION (PROCESS); DEGRADATION; DESORPTION; ELECTROPHORESIS; ENZYME ACTIVITY; ENZYMES; GELATION; GELS; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; MASS SPECTROMETERS; MASS SPECTROMETRY; MICROBIOLOGY; MINE FLOODING; PROTEINS; SPECTROMETRY;

2-DE; BENZOATE BIODEGRADATION; MALDI-TOF MS; META-CLEAVAGE PATHWAY; ORTHO-CLEAVAGE PATHWAY; PSEUDOMONAS PUTIDA;

BIODEGRADATION;

BACTERIAL ENZYME; BENZOIC ACID; CATB ENZYME; CATECHOL 1,2 DIOXYGENASE; CATECHOL 2,3 DIOXYGENASE; DMPC ENZYME; DMPD ENZYME; DMPE ENZYME; DMPF ENZYME; DMPG ENZYME; PCA1 ENZYME; PCAF ENZYME; SUCCINIC ACID; UNCLASSIFIED DRUG;

BACTERIUM; BENZENE; BIODEGRADATION; CATABOLISM; CONCENTRATION (COMPOSITION); ENZYME ACTIVITY; GENE EXPRESSION; IDENTIFICATION METHOD;

ARTICLE; CATABOLISM; CONTROLLED STUDY; ENZYME ACTIVITY; ENZYME ASSAY; MASS SPECTROMETER; MATRIX ASSISTED LASER DESORPTION IONIZATION TIME OF FLIGHT MASS SPECTROMETRY; MICROBIAL DEGRADATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PROTEIN ANALYSIS; PROTEIN DEGRADATION; PSEUDOMONAS PUTIDA; TWO DIMENSIONAL GEL ELECTROPHORESIS;

AMINO ACID SEQUENCE; BACTERIAL PROTEINS; BENZOATES; BIODEGRADATION, ENVIRONMENTAL; CATECHOL 1,2-DIOXYGENASE; ELECTROPHORESIS, GEL, TWO-DIMENSIONAL; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PSEUDOMONAS;

PSEUDOMONAS; PSEUDOMONAS PUTIDA;

EID: 54349102960     PISSN: 01757598     EISSN: None     Source Type: Journal    
DOI: 10.1007/s00253-008-1728-3     Document Type: Article

References (34)

1. TL Aldrich B Frantz JF Gill JJ Kilbane AM Chakrabarty 1987 Cloning and complete nucleotide-sequence determination of the catB gene encoding cis,cis-muconate lactonizing enzyme Gene 52 185 195
2. M Alexander 1981 Biodegradation of chemicals of environmental concern Science 211 132 138
3. F Ampe ND Lindley 1996 Flux limitations in the ortho pathway of benzoate degradation of Alcaligenes eutrophus: metabolite overflow and induction of the meta pathway at high substrate concentrations Microbiology 142 1807 1817
4. B Bhushan A Halasz M Hawari 2005 Biotransformation of CL-20 by a dehydrogenase enzyme from Clostridium sp. EDB2 Appl Microbiol Biotechnol 69 448 455
5. EJ Bouwer AJB Zehnder 1993 Bioremediation of organic compounds-putting microbial metabolism to work Trends Biotechnol 11 360 367
6. ME Caldwell JM Suflita 2000 Detection of phenol and benzoate as intermediates of anaerobic benzene biodegradation under different terminal electron-accepting conditions Environ Sci Technol 34 1216 1220
7. Cao B, Loh KC (2008) Catabolic pathways and cellular responses of Pseudomonas putida P8 during growth on benzoate with proteomics approach. Biotechnol Bioeng. doi: 10.1002/bit.21991
8. VJ Denef J Park TV Tsoi JM Rouillard H Zhang JA Wibbenmeyer W Verstraete E Gulari SA Hashsham JM Tiedje 2004 Biphenyl and benzoate metabolism in a genomic context: outlining genome-wide metabolic networks in Burkholderia xenovorans LB400 Appl Environ Microbiol 70 4961 4970
9. VJ Denef MA Patrauchan C Florizone J Park TV Tsoi W Verstraete JM Tiedje LD Eltis 2005 Growth substrate- and phase-specific expression of biphenyl, benzoate, and C-1 metabolic pathways in Burkholderia xenovorans LB400 J Bacteriol 187 7996 8005
10. CF Feist GD Hegeman 1969 Phenol and benzoate metabolism by Pseudomonas putida: regulation of tangential pathways J Bacteriol 100 1121 1123
11. J Gescher A Zaar M Mohamed H Schagger G Fuchs 2002 Genes coding for a new pathway of aerobic benzoate metabolism in Azoarcus evansii J Bacteriol 184 6301 6315
12. RY Hamzah BS Albaharna 1994 Catechol ring-cleavage in Pseudomonas cepacia-the simultaneous induction of ortho and meta pathways Appl Microbiol Biotechnol 41 250 256
13. CS Harwood RE Parales 1996 The beta-ketoadipate pathway and the biology of self-identity Annu Rev Microbiol 50 553 590
14. H Iwaki Y Hasegawa 2007 Degradation of 2-nitrobenzoate by Burkholderia terrae strain KU-15 Biosci Biotechnol Biochem 71 145 151
15. JI Jimenez B Minambres JL Garcia E Diaz 2002 Genomic analysis of the aromatic catabolic pathways from Pseudomonas putida KT2440 Environ Microbiol 4 824 841
16. SI Kim SY Song KW Kim EM Ho KH Oh 2003 Proteomic analysis of the benzoate degradation pathway in Acinetobacter sp. KS-1 Res Microbiol 154 697 703
17. SI Kim JY Kim SH Yun JH Kim SH Leem C Lee 2004 Proteome analysis of Pseudomonas sp. K82 biodegradation pathways Proteomics 4 3610 3621
18. YH Kim K Cho S-H Yun JY Kim K-H Kwon JS Yoo SI Kim 2006 Analysis of aromatic catabolic pathways in Pseudomonas putida KT 2440 using a combined proteomic approach: 2-DE/MS and cleavable isotope-coded affinity tag analysis Proteomics 6 1301 1318
19. S Krishnan Y Prabhu PS Phale 2004 O-phthalic acid, a dead-end product in one of the two pathways of phenanthrene degradation in Pseudomonas. sp strain PP2 Indian J Biochem Biophys 41 227 232
20. JJ Kukor RH Olsen 1991 Genetic organization and regulation of a meta-cleavage pathway for catechols produced from catabolism of toluene, benzene, phenol, and cresols by Pseudomonas pickettii PKO1 J Bacteriol 173 4587 4594
21. L Kurbatov D Albrecht H Herrmann L Petruschka 2006 Analysis of the proteome of Pseudomonas putida KT2440 grown on different sources of carbon and energy Environ Microbiol 8 466 478
22. N Lee JM Lee KH Min DY Kwon 2003 Purification and characterization of 2,3-dihydroxybiphenyl 1,2-dioxygenase from Comamonas sp. SMN4 J Microbiol Biotechnol 13 487 494
23. KC Loh SS Chua 2002 Ortho pathway of benzoate degradation in Pseudomonas putida: induction of meta pathway at high substrate concentrations Enzyme Microb Technol 30 620 626
24. BA Manjasetty J Powlowski A Vrielink 2003 Crvstal structure of a bifunctional aldolase-dehydrogenase: sequestering a reactive and volatile intermediate Proc Natl Acad Sci U S A 100 6992 6997
25. T Nakazawa A Nakazawa 1970 Pyrocatechase (Pseudomonas) Methods Enzymol 17A 518 522
26. M Nozaki 1970 Metapyrocatechase (Pseudomonas) Methods Enzymol 17A 522 525
27. RE Parales JD Haddock 2004 Biocatalytic degradation of pollutants Curr Opin Biotechnol 15 374 379
28. RE Parales CS Harwood 1993 Regulation of the pcaIJ genes for aromatic acid degradation in Pseudomonas putida J Bacteriol 175 5829 5838
29. RE Parales NC Bruce A Schmid LP Wackett 2002 Biodegradation, biotransformation, and biocatalysis (B3) Appl Environ Microbiol 68 4699 4709
30. A Shevchenko M Wilm O Vorm M Mann 1996 Mass spectrometric sequencing of proteins from silver stained polyacrylamide gels Anal Chem 68 850 858
31. V Shingler FCH Franklin M Tsuda D Holroyd M Bagdasarian 1989 Molecular analysis of a plasmid-encoded phenol hydroxylase from Pseudomonas CF600 J Gen Microbiol 135 1083 1092
32. V Shingler J Powlowski U Marklund 1992 Nucleotide-sequence and functional-analysis of the complete phenol/3,4-dimethylphenol catabolic pathway of Pseudomonas sp. strain-CF600 J Bacteriol 174 711 724
33. LP Wackett 2003 Pseudomonas putida-a versatile biocatalyst Nat Biotechnol 21 136 138
34. ML Wheelis LN Ornston 1972 Genetic control of enzyme induction in the beta-ketoadipate pathway of Pseudomonas putida: deleting mapping of cat mutations J Bacteriol 109 790 795