On the conflicting generic delineation in the Onopordum group (Compositae, Cardueae-Carduinae): A combined nuclear and plastid molecular approach

Australian Systematic Botany

Volumn 21, Issue 4, 2008, Pages 301-311

  Garcia Jacas, Núria ^a   Galbany Casals, Mercè ^a   Romashchenko, Kostyantyn ^b   Susanna, Alfonso ^a  

^a INSTITUT BOTÀNIC DE BARCELONA IBB CSIC ICUB   (Spain)

^b M G KHOLODNY INSTITUTE OF BOTANY   (Ukraine)

Author keywords

[No Author keywords available]

Indexed keywords

DNA; MOLECULAR ANALYSIS; MORPHOLOGY; PLASTID; TAXONOMY;

ALFREDIA; ASTERACEAE; CARDUEAE; LAMYROPAPPUS; OLGAEA; ONOPORDUM; SYNURUS; SYREITSCHIKOVIA;

EID: 54349102506     PISSN: 10301887     EISSN: None     Source Type: Journal    
DOI: 10.1071/SB08018     Document Type: Article

References (70)

1. Aiton W (1789) 'Hortus Kewensis; or, a catalogue of the plants cultivated in the Royal botanic garden at Kew, 3.' (G. Nicol: London)
2. Arano H (1964) Cytotaxonomic studies in subfam. Carduoideae of Japanese Compositae. X. The karyotype analysis in some species of Saussurea and its related genera. Kromosomo 57-59, 1869-1875.
3. Boissier E (1846) 'Diagnoses plantarum orientalium novarum, ser. 1, 6. B. ' (Herrmann: Leipzig)
4. Bremer K (1994) 'Asteraceae. Cladistics & classification.' (Timber Press: Portland, OR)
5. Chuksanova PA, Sveshnikova LT, Alexandrova TV (1968) A new evidence on chromosome numbers in species of the family Compositae Giseke. Citologija 10, 381-386.
6. Cullings KW (1992) Design and testing of a plant-specific PCR primer from ecological and evolutionary studies. Molecular Ecology 1, 233-240. doi: 10.1111/j.1365-294X.1992.tb00182.x
7. Dittrich M (1977) Cynareae-systematic review. In 'The biology and chemistry of the Compositae'. (Eds VH Heywood, JB Harborne, BL Turner) pp. 999-1015. (Academic Press: London)
8. Doyle JJ, Doyle JL (1987) A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bulletin 19, 11-15.
9. Farris JS, Källersjö M, Kluge AG, Bult C (1995) Testing significance of incongruence. Cladistics 10, 315-319. doi: 10.1111/j.1096-0031.1994.tb00181.x
10. Felsenstein J (1985) Confidence limits on phylogenies: an approach using the bootstrap. Evolution 39, 783-791. doi: 10.2307/2408678
11. Fischer H, Jensen U (1990) Phytoserological investigation of the tribe Cardueae s.l. (Compositae). Plant Systematics and Evolution. Supplementum 4, 99-111.
12. Galbany-Casals M, Garcia-Jacas N, Susanna A, Sáez L, Benedí C (2004) Phylogenetic relationships in the Mediterranean Helichrysum (Asteraceae, Gnaphalieae) based on nuclear rDNA ITS sequence data. Australian Systematic Botany 17, 241-253. doi: 10.1071/SB03031
13. Garcia-Jacas N, Susanna A, Mozaffarian V, Ilarslan R (2000) The natural delimitation of Centaurea (Asteraceae: Cardueae): ITS sequence analysis of the Centaurea jacea group. Plant Systematics and Evolution 223, 185-199. doi: 10.1007/BF00985278
14. Garcia-Jacas N, Susanna A, Garnatje T, Vilatersana R (2001) Generic delimitation of phylogeny of the subtribe Centaureinae (Asteraceae): a combined nuclear and chloroplastic DNA analysis. Annals of Botany 87, 503-515. doi: 10.1006/anbo.2000.1364
15. Garcia-Jacas N, Garnatje T, Susanna A, Vilatersana R (2002) Tribal and subtribal delimitation and phylogeny of the Cardueae (Asteraceae): a combined nuclear and chloroplast DNA analysis. Molecular Phylogenetics and Evolution 22, 51-64. doi: 10.1006/mpev.2001.1038
16. Garcia-Jacas N, Uysal T, RomashchenkoK, Suárez-Santiago VN, Ertuǧrul K, Susanna A (2006) Centaurea revisited: a molecular survey of the Jacea group. Annals of Botany 98, 741-753. doi: 10.1093/aob/mcl157
17. Garnatje T, Susanna A, Garcia-Jacas N, Vilatersana R, Vallès J (2005) A first approach to the molecular phylogeny of the genus Echinops L. (Asteraceae): sectional delimitation and relationships with the genus Acantholepis Less. Folia Geobotanica 40, 407-419. doi: 10.1007/BF02804288
18. Grant V (1963) 'The origin of adaptations.' (Columbia University Press: New York)
19. Grant V (1981) 'Plant speciation.' (Columbia University Press: New York)
20. Grubov VI (2001) 'Key to the vascular plants of Mongolia, 2.' (Science Publishers: Plymouth)
21. Gurzenkov NN (1973) Studies of chromosome number of plants from the south of the Soviet Far East. Komarov Lectures 20, 47-61.
22. Häffner E (2000) On the phylogeny of the subtribe Carduinae (tribe Cardueae, Compositae). Englera 21, 1-209.
23. Häffner E, Hellwig FH (1999) Phylogeny of the tribe Cardueae (Compositae) with emphasis on the subtribe Carduinae: an analysis based on ITS sequence data. Willdenowia 29, 27-39.
24. Hasegawa M, Kishino H, Yano T (1985) Dating the human-ape split by a molecular clock of mitochondrial DNA. Journal of Molecular Evolution 22, 160-174. doi: 10.1007/BF02101694
25. Hidalgo O, Garcia-Jacas N, Garnatje T, Susanna A (2006) Phylogeny of Rhaponticum (Asteraceae, Cardueae-Centaureinae) and related genera inferred from nuclear and chloroplastDNAsequence data: taxonomic and biogeographic implications. Annals of Botany 97, 705-714. doi: 10.1093/aob/mcl029
26. Huelsenbeck JP, Ronquist F (2001) MRBAYES: Bayesian inference of phylogenenetic trees. Bioinformatics 17, 754-755. doi: 10.1093/bioinformatics/17.8.754
27. Iljin MM (1963) Rod 1591. Olgaea Iljin. In 'Flora SSSR. Vol. 28'. (Eds EG Bobrov, SK Czerepanov) pp. 53-63. (Bishen Singh Mahendra Pal Singh & Koeltz Scientific Books: Dehra Dun, India)
28. Iljin MM, Semidel GA (1963) Rod 1609. Syreitschikovia Pavlov. In 'Flora SSSR. Vol. 28'. (Eds EG Bobrov, SK Czerepanov) pp. 376-379. (Bishen Singh Mahendra Pal Singh & Koeltz Scientific Books: Dehra Dun, India)
29. Kazmi SMA (1963) Revision der Gattung Carduus (Compositae). Teil I. Mitteilungen aus der Botanischen Staatssammlung München 5, 139-198.
30. Kazmi SMA (1964) Revision der Gattung Carduus (Compositae). Teil II. Mitteilungen aus der Botanischen Staatssammlung München 5, 279-550.
31. Kelch DG, Baldwin BG (2003) Phylogeny and ecological radiation of New World thistles (Cirsium, Cardueae-Compositae) based on ITS and ETS rDNA sequence data. Molecular Ecology 12, 141-151. doi: 10.1046/j.1365-294X.2003.01710.x
32. Kita Y, Fujikawa K, Ito M, Ohba H, Kato M (2004) Molecular phylogenetic analyses and systematics of the genus Saussurea and related genera (Asteraceae, Cardueae). Taxon 53, 679-690. doi: 10.2307/4135443
33. Kitamura S (1934) Compositae novae japonicae VII. Acta Phytotaxonomica et Geobotanica 3, 97-111.
34. Krasnikov AA, Zhirova OS, Lomonosova MN, Smirnov SV (2003) Chromosome numbers of Asteraceae from the southern Siberia and Kazakstan. Botanicheskii Zhurnal 88, 151-153.
35. Levin DA (1983) Polyploidy and novelty in flowering plants. American Naturalist 122, 1-25. doi: 10.1086/284115
36. Linnaeus C (1753) 'Species plantarum II.' (Holmiae Impensis Laurentii Salvii: Stockholm)
37. López-Vinyallonga S, Mehregan I, Garcia-Jacas N, Tscherneva O, Susanna A, Kadereit JW (In press) Phylogeny and evolution of the Arctium-Cousinia complex (Compositae, Cardueae-Carduinae). Taxon, in press.
38. Maddison DR (1991) The discovery and importance of multiple islands of most-parsimonious trees. Systematic Zoology 40, 315-328. doi: 10.2307/2992325
39. Malakhova LA (1990) Kariologocheskij analiz primodnykh populjacij redkich i ischezajushikh rastenij na juge Tomskoj Oblasti. Byulleten Glavnogo Botanicheskogo Sada 155, 60-66. [Karyological analysis of natural populations of rare or endangered plants from the south of the province of Tomsk]
40. Martins L, Hellwig FH (2005) Systematic position of the genera Serratula and Klasea (Cardueae, Asteraceae) inferred from ETS and ITS sequence data and new combinations in Klasea. Taxon 54, 632-638.
41. Nylander JAA (2004) 'MrModeltest ver. 2.' Program distributed by the author. Evolutionary Biology Centre, Uppsala University, Uppsala.
42. Pavlov NV (1933) Syreitschikovia, genus novum Compositarum ex Media Asia. Feddes Repertorium Specierum Novarum Regni Vegetabilis 31, 192-193.
43. von Raab-Straube E (2003) Phylogenetic relationships in Saussurea (Compositae, Cardueae) sensu lato, inferred from morphological, ITS and trnL-trnF sequence data, with a synopsis of Himalaiella gen. nov., Lipschitziella and Frolovia. Willdenowia 33, 379-402.
44. Rodríguez F, Oliver JL, Marín A, Medina JR (1990) The general stochastic model of nucleotide substitution. Journal of Theoretical Biology 142, 485-501. doi: 10.1016/S0022-5193(05)80104-3
45. Ronquist F, Huelsenbeck JP (2003) MRBAYES 3: Bayesian phylogenetic inference under mixed models. Bioinformatics 19, 1572-1574. doi: 10.1093/bioinformatics/btg180
46. Rostovtseva TS (1979) Chromosome numbers of some species of the family Asteraceae Dumort. Botanicheskii Zhurnal 64, 582-589.
47. Rostovtseva TS (1983) Chromosome numbers of some species of the family Asteraceae II. Botanicheskii Zhurnal 68, 1538-1543.
48. Smirnov SV (2001) Uto takoe Olgaea altaica (Asteraceae)? Turczaninowia 4, 18-22. [What is Olgaea altaica (Asteraceae)?]
49. Soltis DE, Soltis PS (2000) The role of genetic and genomic attributes in the success of polyploids. Proceedings of the National Academy of Sciences, USA 97, 7051-7057. doi: 10.1073/pnas.97.13.7051
50. Soltis DE, Soltis PS, Tate JA (2003) Advances in the study of polyploidy since plant speciation. New Phytologist 161, 173-191.
51. Suárez-Santiago VN, Salinas MJ, Garcia-Jacas N, Soltis PS, Soltis DE, Blanca G (2007) Evolution by reticulation of the Acrolophus subgroup (Centaurea L., Compositae) in the occidental Mediterranean: origin and diversification of the section Willkommia Blanca. Molecular Phylogenetics and Evolution 43, 156-172. doi: 10.1016/j.ympev.2006. 08.006
52. Suc JP (1984) Origin and evolution of the Mediterranean vegetation and climate in Europe. Nature 307, 429-432. doi: 10.1038/307429a0
53. Sun Y, Skinner DZ, Liang GH, Hulbert SH (1994) Phylogenetic analysis of Sorghum and related taxa using internal transcribed spacers of nuclear ribosomal DNA. Theoretical and Applied Genetics 89, 26-32. doi: 10.1007/BF00226978
54. Susanna A, Garcia-Jacas N (2007) Tribe Cardueae. In 'Flowering plants. Eudicots. Asterales. Vol. 8'. (Eds JW Kadereit, C Jeffrey) pp. 123-146. In 'The families and genera of vascular plants'. (Ed. K Kubitzki) (Springer Verlag: Berlin)
55. Susanna A, Garcia-Jacas N, Soltis DE, Soltis PS (1995) Phylogenetic relationships in tribe Cardueae (Asteraceae) based on ITS sequences. American Journal of Botany 82, 1056-1068. doi: 10.2307/2446236
56. Susanna A, Garnatje T, Garcia-Jacas N (1999) Molecular phylogeny of Cheirolophus (Asteraceae: Cardueae-Centaureinae) based on ITS sequences of nuclear ribosomal DNA. Plant Systematics and Evolution 214, 147-160. doi: 10.1007/BF00985736
57. Susanna A, Garnatje T, Garcia-Jacas N, Vilatersana R (2002) On the correct subtribal placement of the genera Syreitschikovia and Nikitinia (Asteraceae, Cardueae): Carduinae or Centaureinae? Botanical Journal of the Linnean Society 140, 313-319. doi: 10.1046/j.1095-8339.2002.00104.x
58. Susanna A, Garcia-Jacas N, Vilatersana R, Garnatje T (2003) Generic boundaries and evolution of characters in the Arctium group: a nuclear and chloroplast DNA analysis. Collectanea Botanica (Barcelona) 26, 101-118.
59. Susanna A, Garcia-Jacas N, Hidalgo O, Vilatersana R, Garnatje T (2006) The Cardueae (Compositae) revisited: insights from ITS, trnL-trnF, and matK nuclear and chloroplast DNA analysis. Annals of the Missouri Botanical Garden 93, 150-171. doi: 10.3417/0026-6493(2006)93[150: TCCRIF]2.0.CO;2
60. Swofford DL (2002) 'PAUP*. Phylogenetic analysis using parsimony (*and other methods), ver. 4.0b10.' (Sinauer: Sunderland, MA)
61. Swofford DL, Olsen GJ (1990) Phylogeny reconstruction. In 'Molecular systematics'. (Eds D Hillis, C Moritz) pp. 411-501. (Sinauer: Sunderland, MA)
62. Taberlet P, Gielly L, Pautou G, Bouvet J (1991) Universal primers for amplification of three non-coding regions of chloroplast DNA. Plant Molecular Biology 17, 1105-1109. doi: 10.1007/BF00037152
63. Taniguchi K, Tanaka R, Yonezawa Y, Komatsu H (1975) Types of banding patterns of plant chromosomes by modified BSG method. Kromosomo 100, 3123-3135.
64. Thompson JD, Lumaret R (1992) The evolutionary dynamics of polyploid plants: origins, establishment and persistence. Trends in Ecology & Evolution 7, 302-307. doi: 10.1016/0169-5347(92)90228-4
65. Vilatersana R, Susanna A, Garcia-Jacas N, Garnatje T (2000) Generic delimitation and phylogeny of the Carduncellus-Carthamus complex (Asteraceae) based on ITS sequences. Plant Systematics and Evolution 221, 89-105. doi: 10.1007/BF01086383
66. Wang Y-J, Liu J-Q, Miehe G (2007) Phylogenetic origins of the Himalayan endemic Dolomiaea, Diplazoptilon and Xanthopappus (Asteraceae: Cardueae) based on three DNA Regions. Annals of Botany 99, 311-322. doi: 10.1093/aob/mcl259
67. Watanabe K (2008). Index to chromosome numbers in Asteraceae. http:// www-asteraceae.cla.kobe-u.ac.jp/index.html [Accessed 1 April 2008].
68. White TJ, Bruns T, Lee S, Taylor J (1990) Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In 'PCR protocols: a guide to methods and applications'. (Eds MA Innis, DH Gelfand, JJ Sninsky, TJ White) pp. 315-322. (Academic Press: San Diego, CA)
69. Zharkikh A (1994) Estimation of evolutionary distances between nucleotide sequences. Journal of Molecular Evolution 39, 315-329. doi: 10.1007/BF00160155
70. Zhukova PG (1967) Karyology of some plants, cultivated in the Arctic-Alpine Botanical Garden. In 'Plantarum in Zonam Polarem Transportatio II'. (Ed. NA Avrorin) pp. 139-149. (Akademiia Nauk SSSR: Leningrad)