Mass spectrometric proteome analysis suggests anaerobic shift in metabolism of Dauer larvae of Caenorhabditis elegans

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1784, Issue 11, 2008, Pages 1763-1770

  Mádi, András ^a,b   Mikkat, Stefan ^a   Koy, Cornelia ^a   Ringel, Bruno ^a   Thiesen, Hans Jürgen ^a   Glocker, Michael O ^a  

^a UNIVERSITY OF ROSTOCK   (Germany)

^b UNIVERSITY OF DEBRECEN   (Hungary)

Author keywords

C. elegans; Fractionated protein extraction; MALDI ToF MS; Metabolism; Proteomics

Indexed keywords

ALCOHOL DEHYDROGENASE; ALDEHYDE DEHYDROGENASE; ASPARTIC PROTEINASE; BINDING PROTEIN; INORGANIC PYROPHOSPHATASE; METHIONINE TRANSFER RNA LIGASE; PHOSPHATIDYLETHANOLAMINE; PYROPHOSPHATE;

ARTICLE; CAENORHABDITIS ELEGANS; DIGESTION; ENERGY RESOURCE; FEEDING; FERMENTATION; LARVA; LIFE CYCLE; MASS SPECTROMETRY; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; PROTEIN METABOLISM; PROTEIN PROCESSING; PROTEIN SYNTHESIS; PROTEOMICS; SURVIVAL TIME;

AMINO ACID SEQUENCE; ANAEROBIOSIS; ANIMALS; CAENORHABDITIS ELEGANS; CELL FRACTIONATION; LARVA; LIFE CYCLE STAGES; MASS SPECTROMETRY; MOLECULAR SEQUENCE DATA; PROTEOME;

ANIMALIA; CAENORHABDITIS ELEGANS; NEMATODA;

EID: 54149083934     PISSN: 15709639     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbapap.2008.05.017     Document Type: Article

References (43)

1. Sulston J.E., and Horvitz H.R. Post-embryonic cell lineages of the nematode, Caenorhabditis elegans. Dev. Biol. 56 (1977) 110-156
2. Sulston J.E., Schierenberg E., White J.G., and Thomson J.N. The embryonic cell lineage of the nematode Caenorhabditis elegans. Dev. Biol. 100 (1983) 64-119
3. Brenner S. The genetics of Caenorhabditis elegans. Genetics 77 (1974) 71-94
4. Cassada R.C., and Russell R.L. The dauer larva, a post-embryonic developmental variant of the nematode Caenorhabditis elegans. Dev. Biol. 46 (1975) 326-342
5. Klass M., and Hirsh D. Non-ageing developmental variant of Caenorhabditis elegans. Nature 260 (1976) 523-525
6. Riddle D.L., and Bird A.F. Responses of Anguina agrostis to detergent and anesthetic treatment. J. Nematol. 17 (1985) 165-168
7. Bini L., Heid H., Liberatori S., Geier G., Pallini V., and Zwilling R. Two-dimensional gel electrophoresis of Caenorhabditis elegans homogenates and identification of protein spots by microsequencing. Electrophoresis 18 (1997) 557-562
8. Kaji H., Tsuji T., Mawuenyega K.G., Wakamiya A., Taoka M., and Isobe T. Profiling of Caenorhabditis elegans proteins using two-dimensional gel electrophoresis and matrix assisted laser desorption/ionization-time of flight-mass spectrometry. Electrophoresis 21 (2000) 1755-1765
9. Schrimpf S.P., Langen H., Gomes A.V., and Wahlestedt C. A two-dimensional protein map of Caenorhabditis elegans. Electrophoresis 22 (2001) 1224-1232
10. Mawuenyega K.G., Kaji H., Yamuchi Y., Shinkawa T., Saito H., Taoka M., Takahashi N., and Isobe T. Large-scale identification of Caenorhabditis elegans proteins by multidimensional liquid chromatography-tandem mass spectrometry. J. Proteome Res. 2 (2003) 23-35
11. Krijgsveld J., Ketting R.F., Mahmoudi T., Johansen J., Artal-Sanz M., Verrijzer C.P., Plasterk R.H., and Heck A.J. Metabolic labeling of C. elegans and D. melanogaster for quantitative proteomics. Nat. Biotechnol. 21 (2003) 927-931
12. Madi A., Mikkat S., Ringel B., Thiesen H.J., and Glocker M.O. Profiling stage-dependent changes of protein expression in Caenorhabditis elegans by mass spectrometric proteome analysis leads to the identification of stage-specific marker proteins. Electrophoresis 24 (2003) 1809-1817
13. Tabuse Y., Nabetani T., and Tsugita A. Proteomic analysis of protein expression profiles during Caenorhabditis elegans development using two-dimensional difference gel electrophoresis. Proteomics 5 (2005) 2876-2891
14. Madi A., Mikkat S., Ringel B., Ulbrich M., Thiesen H.J., and Glocker M.O. Mass spectrometric proteome analysis for profiling temperature-dependent changes of protein expression in wild-type Caenorhabditis elegans. Proteomics 3 (2003) 1526-1534
15. Bantscheff M., Ringel B., Madi A., Schnabel R., Glocker M.O., and Thiesen H.J. Differential proteome analysis and mass spectrometric characterization of germ line development-related proteins of Caenorhabditis elegans. Proteomics 4 (2004) 2283-2295
16. Dong M.Q., Venable J.D., Au N., Xu T., Park S.K., Cociorva D., Johnson J.R., Dillin A., and Yates J.R. Quantitative mass spectrometry identifies insulin signaling targets in C. elegans. Science 317 (2007) 660-663
17. Lewis J.A., and Fleming J.T. Basic culture methods. Methods Cell Biol. 48 (1995) 3-29
18. Chen W., Lim H.H., and Lim L. A new member of the ras superfamily, the rac1 homologue from Caenorhabditis elegans. Cloning and sequence analysis of cDNA, pattern of developmental expression, and biochemical characterization of the protein. J. Biol. Chem. 268 (1993) 320-324
19. Yuan X., Russell T., Wood G., and Desiderio D.M. Analysis of the human lumbar cerebrospinal fluid proteome. Electrophoresis 23 (2002) 1185-1196
20. Ramagli L.S. Quantifying protein in 2-D PAGE solubilization buffers. Methods Mol. Biol. 112 (1999) 99-103
21. Neuhoff V., Arold N., Taube D., and Ehrhardt W. Improved staining of proteins in polyacrylamide gels including isoelectric focusing gels with clear background at nanogram sensitivity using Coomassie Brilliant Blue G-250 and R-250. Electrophoresis 9 (1988) 255-262
22. Shevchenko A., Wilm M., Vorm O., and Mann M. Mass spectrometric sequencing of proteins from silver-stained polyacrylamide gels. Anal. Chem. 68 (1996) 850-858
23. Nordhoff E., Schuerenberg M., Thiele G., Luebbert C., Kloeppel K.D., Theiss D., Lehrach H., and Gobom J. Sample preparation protocols for MALDI-MS of peptides and oligonucleotides using prestructured sample supports. Int. J. Mass Spectrom. 226 (2003) 163-180
24. Sinz A., Bantscheff M., Mikkat S., Ringel B., Drynda S., Kekow J., Thiesen H.J., and Glocker M.O. Mass spectrometric proteome analyses of synovial fluids and plasmas from patients suffering from rheumatoid arthritis and comparison to reactive arthritis or osteoarthritis. Electrophoresis 23 (2002) 3445-3456
25. Perkins D.N., Pappin D.J., Creasy D.M., and Cottrell J.S. Probability-based protein identification by searching sequence databases using mass spectrometry data. Electrophoresis 20 (1999) 3551-3567
26. Lemercier G., Espiau B., Ruiz F.A., Vieira M., Luo S., Baltz T., Docampo R., and Bakalara N. A pyrophosphatase regulating polyphosphate metabolism in acidocalcisomes is essential for Trypanosoma brucei virulence in mice. J. Biol. Chem. 279 (2004) 3420-3425
27. Banfield M.J., Barker J.J., Perry A.C., and Brady R.L. Function from structure? The crystal structure of human phosphatidylethanolamine-binding protein suggests a role in membrane signal transduction. Structure 6 (1998) 1245-1254
28. Tsang W.Y., and Lemire B.D. The role of mitochondria in the life of the nematode, Caenorhabditis elegans. Biochim. Biophys. Acta 1638 (2003) 91-105
29. Scott B.A., Avidan M.S., and Crowder C.M. Regulation of hypoxic death in C. elegans by the insulin/IGF receptor homolog DAF-2. Science 296 (2002) 2388-2391
30. Holt S.J., and Riddle D.L. SAGE surveys C. elegans carbohydrate metabolism: evidence for an anaerobic shift in the long-lived dauer larva. Mech. Ageing Dev. 124 (2003) 779-800
31. Gygi S.P., Rochon Y., Franza B.R., and Aebersold R. Correlation between protein and mRNA abundance in yeast. Mol. Cell. Biol. 19 (1999) 1720-1730
32. Cherkasova V., Ayyadevara S., Egilmez N., and Shmookler Reis R. Diverse Caenorhabditis elegans genes that are upregulated in dauer larvae also show elevated transcript levels in long-lived, aged, or starved adults. J. Mol. Biol. 300 (2000) 433-448
33. Burnell A.M., Houthoofd K., O'Hanlon K., and Vanfleteren J.R. Alternate metabolism during the dauer stage of the nematode Caenorhabditis elegans. Exp. Gerontol. 40 (2005) 850-856
34. Tavernarakis N., and Driscoll M. Caloric restriction and lifespan: a role for protein turnover?. Mech. Ageing Dev. 123 (2002) 215-229
35. Pan K.Z., Palter J.E., Rogers A.N., Olsen A., Chen D., Lithgow G.J., and Kapahi P. Inhibition of mRNA translation extends lifespan in Caenorhabditis elegans. Aging Cell. 6 (2007) 111-119
36. Yang Z., and Wensel T.G. Inorganic pyrophosphatase from bovine retinal rod outer segments. J. Biol. Chem. 267 (1992) 24634-24640
37. Kornberg A. Inorganic polyphosphate: toward making a forgotten polymer unforgettable. J. Bacteriol. 177 (1995) 491-496
38. Kornberg A., Rao N.N., and Ault-Riche D. Inorganic polyphosphate: a molecule of many functions. Annu. Rev. Biochem. 68 (1999) 89-125
39. Wadsworth W.G., and Riddle D.L. Acidic intracellular pH shift during Caenorhabditis elegans larval development. Proc. Natl. Acad. Sci. USA 85 (1988) 8435-8438
40. Wadsworth W.G., and Riddle D.L. Developmental regulation of energy metabolism in Caenorhabditis elegans. Dev. Biol. 132 (1989) 167-173
41. Tcherepanova I., Bhattacharyya L., Rubin C.S., and Freedman J.H. Aspartic proteases from the nematode Caenorhabditis elegans. Structural organization and developmental and cell-specific expression of asp-1. J. Biol. Chem. 275 (2000) 26359-26369
42. Rea S., and Johnson T.E. A metabolic model for life span determination in Caenorhabditis elegans. Dev. Cell. 5 (2003) 197-203
43. Finkel T., and Holbrook N.J. Oxidants, oxidative stress and the biology of ageing. Nature 408 (2000) 239-247