Changes in microbial diversity in industrial wastewater evaporation ponds following artificial salination

FEMS Microbiology Ecology

Volumn 66, Issue 2, 2008, Pages 437-446

  Ben Dov, Eitan ^a,b   Shapiro, Orr H ^a   Gruber, Ronen ^a   Brenner, Asher ^a   Kushmaro, Ariel ^a  

^a BEN GURION UNIVERSITY OF THE NEGEV   (Israel)

^b ACHVA ACADEMIC COLLEGE   (Israel)

Author keywords

Artificial salination; Industrial wastewater evaporation ponds; Microbial diversity; Sulfate reducing bacteria

Indexed keywords

HYDROGEN SULFIDE; LAKE WATER; RNA 16S;

COMPARATIVE STUDY; DOMINANCE; ENZYME ACTIVITY; EVAPORATION; GENETIC ANALYSIS; MICROBIAL COMMUNITY; PHYLOGENETICS; SALINIZATION; SPECIES DIVERSITY; SULFATE-REDUCING BACTERIUM; WASTEWATER;

ACTINOBACTERIA; ADENOSINE 5' PHOSPHOSULFATE REDUCTASE ALPHA SUBUNIT GENE; ARTICLE; BACTERIAL GENE; BACTEROIDETES; CONTROLLED STUDY; EVAPORATION; FIRMICUTES; GENE LIBRARY; MICROBIAL DIVERSITY; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; PROTEOBACTERIA; SALINITY; SPIROCHETE; SULFATE REDUCING BACTERIUM; UNINDEXED SEQUENCE; WASTE WATER;

ADENOSINE PHOSPHOSULFATE; BACTERIA; INDUSTRIAL WASTE; MOLECULAR SEQUENCE DATA; OXIDOREDUCTASES; PHYLOGENY; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SULFUR-REDUCING BACTERIA; WASTE DISPOSAL, FLUID; WATER; WATER MICROBIOLOGY;

ACTINOBACTERIA; BACTERIA (MICROORGANISMS); BACTEROIDETES; FIRMICUTES; PROTEOBACTERIA; SPIROCHAETES;

EID: 53949105640     PISSN: 01686496     EISSN: 15746941     Source Type: Journal    
DOI: 10.1111/j.1574-6941.2008.00549.x     Document Type: Article

References (46)

1. Amachi S, Kamagata Y, Kanagawa T Muramatsu Y (2001) Bacteria mediate methylation of iodine in marine and terrestrial environments. Appl Environ Microbiol 67 : 2718 2722.
2. Bak F Pfennig N (1987) Chemolithotrophic growth of Desulfovibrio sulfodismutans sp. nov. by disproportionation of inorganic sulfur compounds. Arch Microb 147 : 184 189.
3. Belkin S, Brenner A Abeliovich A (1993) Biological treatment of a high salinity chemical industrial wastewater. Water Sci Technol 27 : 105 112.
4. Ben-Dov E, Shapiro OH, Siboni N Kushmaro A (2006) Advantage of using inosine at the 3′ termini of 16S rRNA gene universal primers for the study of microbial diversity. Appl Environ Microbiol 72 : 6902 6906.
5. Ben-Dov E, Brenner A Kushmaro A (2007) Quantification of sulfate-reducing bacteria in industrial wastewater by real-time PCR using dsrA and apsA genes. Microb Ecol 54 : 439 451.
6. Benlloch S, López-López A, Casamayor EO et al 2002) Prokaryotic genetic diversity throughout the salinity gradient of a coastal solar saltern. Environ Microbiol 4 : 349 360.
7. Bowman JP, Rea SM, McCammon SA McMeekin TA (2000) Diversity and community structure within anoxic sediment from marine salinity meromictic lakes and a coastal meromictic marine basin, Vestfold Hills, Eastern Antarctica. Environ Microbiol 2 : 227 237.
8. Bramucci M, Kane H, Chen M Nagarajan V (2003) Bacterial diversity in an industrial wastewater bioreactor. Appl Microbiol Biotechnol 62 : 594 600.
9. Casamayor EO, Massana R, Benlloch S, Ovreas L, Diez B, Goddard VJ, Gasol JM, Joint I, Rodríguez-Valera F Pedrós-Alió C (2002) Changes in archaeal, bacterial, and eukaryal assemblages along a salinity gradient by comparison of genetic fingerprinting methods in a multipond solar saltern. Environ Microbiol 4 : 338 348.
10. Chanal A, Chapon V, Benzerara K, Barakat M, Christen R, Achouak W, Barras F Heulin T (2006) The desert of Tataouine: an extreme environment that hosts a wide diversity of microorganisms and radiotolerant bacteria. Environ Microbiol 8 : 514 525.
11. Demirjian DC, Moris-Varas F Cassidy CS (2001) Enzymes from extremophiles. Curr Opin Chem Biol 5 : 144 151.
12. Dijk JA, Stams AJ, Schraa G, Ballerstedt H, de Bont JAM Gerritse J (2003) Anaerobic oxidation of 2-chloroethanol under denitrifying conditions by Pseudomonas stutzeri strain JJ. Appl Microbiol Biotechnol 63 : 68 74.
13. Felsenstein J (1985) Confidence limits of phylogenies: an approach using the bootstrap. Evolution 39 : 783 791.
14. Felske A, Rheims H, Wolterink A, Stackebrandt E Akkermans AD (1997) Ribosome analysis reveals prominent activity of an uncultured member of the class Actinobacteria in grassland soils. Microbiology 143 : 2983 2989.
15. Foti MJ, Sorokin DY, Zacharova EE, Pimenov PV, Kuenen JG Muyzer G (2008) Bacterial diversity and activity along a salinity gradient in soda lakes of the Kulunda Steppe (Altai, Russia). Extremophiles 12 : 133 145.
16. Friedrich MW (2002) Phylogenetic analysis reveals multiple lateral transfers of adenosine-5′-phosphosulfate reductase genes among sulfate-reducing microorganisms. J Bacteriol 184 : 278 289.
17. Fuse H, Inoue H, Murakami K, Takimura O Yamaoka Y (2003) Production of free and organic iodine by Roseovarius spp. FEMS Microbiol Lett 229 : 189 194.
18. Gough L, Grace JB Taylor KL (1994) The relationship between species richness and community biomass: the importance of environmental variables. Oikos 70 : 271 279.
19. Grace JB Pugesek BH (1997) A structural equation model of plant species richness and its application to a coastal wetland. Am Nat 149 : 436 460.
20. Guo Q Berry WL (1998) Species richness and biomass: dissection of the hump-shaped relationships. Ecology 79 : 2555 2559.
21. Inoue K, Habe H, Yamane H, Omori T Nojiri H (2005) Diversity of carbazole-degrading bacteria having the car gene cluster: isolation of a novel gram-positive carbazole-degrading bacterium. FEMS Microbiol Lett 245 : 145 153.
22. Ito T, Okabe S, Satoh H Watanabe Y (2002) Successional development of sulfate-reducing bacterial populations and their activities in a wastewater biofilm growing under microaerophilic conditions. Appl Environ Microbiol 68 : 1392 1402.
23. Jørgensen BB Bak F (1991) Pathways and microbiology of thiosulfate transformations and sulfate reduction in a marine sediment (Kattegat, Denmark). Appl Environ Microbiol 57 : 847 856.
24. Kanaly RA, Bartha R, Watanabe K Harayama S (2000) Rapid mineralization of benzo[a] pyrene by a microbial consortium growing on diesel fuel. Appl Environ Microbiol 66 : 4205 4211.
25. Kasai Y, Kishira H, Syutsubo K Harayama S (2001) Molecular detection of marine bacterial populations on beaches contaminated by the Nakhodka tanker oil-spill accident. Environ Microbiol 3 : 246 255.
26. Kautsky L Kautsky H (1989) Algal species diversity and dominance along gradients of stress and disturbance in marine environments. Vegetatio 83 : 259 267.
27. Klein M, Friedrich M, Roger AJ, Hugenholtz P, Fishbain S, Abicht H, Blackall LL, Stahl DA Wagner M (2001) Multiple lateral transfers of dissimilatory sulfate reductase genes between major lineages of sulfate-reducing prokaryotes. Appl Environ Microbiol 67 : 6028 6035.
28. 4 ratio. Biotechnol Lett 21 : 299 302.
29. Kuhl M Jorgensen BB (1992) Microsensor measurements of sulfate reduction and sulfide oxidation in compact microbial communities of aerobic biofilms. Appl Environ Microbiol 58 : 1164 1174.
30. Kumar S, Tomura K Nei M (2004) MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5 : 150 163.
31. Lefebvre O, Vasudevan N, Thanasekaran K, Moletta R Godon JJ (2006) Microbial diversity in hypersaline wastewater: the example of tanneries. Extremophiles 10 : 505 513.
32. Ley RE, Harris JK, Wilcox J, Spear JR, Miller SR, Bebout BM, Maresca JA, Bryant DA, Sogin ML Pace NR (2006) Unexpected diversity and complexity of the Guerrero Negro hypersaline microbial mat. Appl Environ Microbiol 72 : 3685 3695.
33. Lozupone AC Knight R (2006) Global patterns in bacterial diversity. Proc Natl Acad Sci USA 104 : 11436 11440.
34. Maidak BL, Cole JR, Parker CT Jr. et al 1999) A new version of the RDP (Ribosomal Database Project). Nucleic Acids Res 27 : 171 173.
35. Nogales B, Moore ERB, Llobet-Brossa E, Rossello-Mora R, Amann R Timmis KN (2001) Combined use of 16S rRNA ribosomal DNA and 16S rRNA to study the bacterial community of polychlorinated biphenylpolluted soil. Appl Environ Microbiol 67 : 1874 1884.
36. Nübel U, Bateson MM, Madigan MT, Kühl M Ward DM (2001) Diversity and distribution in hypersaline microbial mats of bacteria related to Chloroflexus spp. Appl Environ Microbiol 67 : 4365 4371.
37. Øvreås L, Daae FL, Torsvik V Rodríguez-Valera F (2003) Characterization of microbial diversity in hypersaline environments by melting profiles and reassociation kinetics in combination with terminal restriction fragment length polymorphism (T-RFLP). Microb Ecol 46 : 291 301.
38. Postgate JR (1984) The Sulphate-Reducing Bacteria, 2nd edn. Cambridge University Press, Cambridge, UK.
39. Ravot G, Magot M, Fardeau ML, Patel BKC, Thomas P, Garcia JL Ollivier B (1999) Fusibacter paucivorans gen. nov., sp. nov., an anaerobic, thiosulfate-reducing bacterium from an oil-producing well. Intl J Syst Bacteriol 49 : 1141 1147.
40. Roberts MF (2005) Organic compatible solutes of halotolerant and halophilic microorganisms. Saline Syst 1 : 5.
41. Saito N Nei M (1987) The neighbor-joining method: a new method for constructing phylogenetic trees. Mol Biol Evol 4 : 406 425.
42. Schloss PD Handelsman J (2005) Introducing DOTUR, a computer program for defining operational taxonomic units and estimating species richness. Appl Environ Microbiol 71 : 1501 1506.
43. Setti L, Rossi M, Lanzarini G Pifferi PG (1993) Barrier and carrier effects of n-alkane on the anaerobic degradation of dibenzothiophene by Desulfovibrio desulfuricans. Biotechnol Lett 15 : 527 530.
44. Smith VH (2007) Microbial diversity-productivity relationships in aquatic ecosystems. FEMS Microbiol Ecol 62 : 181 186.
45. Wani AA, Surakasi VP, Siddharth J, Raghavan RG, Patole MS, Ranade D Shouche YS (2006) Molecular analyses of microbial diversity associated with the Lonar soda lake in India: an impact crater in a basalt area. Res Microbiol 157 : 928 937.
46. Wu QL, Zwart G, Schauer M, Kamst-van Agterveld MP Hahn MW (2006) Bacterioplankton community composition along a salinity gradient of sixteen high-mountain lakes located on the Tibetan plateau, China. Appl Environ Microbiol 72 : 5478 5485.