cneViewer: A database of conserved non-coding elements for studies of tissue-specific gene regulation

Bioinformatics

Volumn 24, Issue 20, 2008, Pages 2418-2419

  Persampieri, Jason ^a   Ritter, Deborah I ^a   Lees, Daniel ^a   Lehoczky, Jessica ^b   Li, Qiang ^c   Guo, Su ^c   Chuang, Jeffrey H ^a  

^a BOSTON COLLEGE   (United States)

^b HARVARD MEDICAL SCHOOL   (United States)

^c UNIVERSITY OF CALIFORNIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

UNTRANSLATED RNA;

ARTICLE; COMPUTER PROGRAM; GENE CONTROL; GENE EXPRESSION REGULATION; GENE FUNCTION; GENE MAPPING; GENE SEQUENCE; GENETIC CONSERVATION; GENETIC DATABASE; GENOME ANALYSIS; INTERNET; NONHUMAN; PRIORITY JOURNAL; SEQUENCE ANALYSIS; TISSUE SPECIFICITY; UNTRANSLATED REGION; VERTEBRATE; ZEBRA FISH;

ANIMALS; BASE SEQUENCE; COMPUTATIONAL BIOLOGY; CONSERVED SEQUENCE; DATABASES, GENETIC; DNA; GENE EXPRESSION REGULATION; HUMANS; INTERNET; MOLECULAR SEQUENCE DATA; REGULATORY SEQUENCES, NUCLEIC ACID; SOFTWARE; ZEBRAFISH;

DANIO RERIO; VERTEBRATA;

EID: 53749098979     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn443     Document Type: Article

References (7)

1. Engstrom,P. et al. (2008) Ancora: A web resource for exploring highly conserved noncoding elements and their association with developmental regulatory genes. Genome Biol., 9, R34.
2. Ovcharenko,J. et al. (2004) ECR browser: A tool for visualizing and accessing data from comparisons of multiple vertebrate genomes. Nucleic Acids Res., 32 (Suppl. 2), W280-W286.
3. Sprague,J. et al. (2006) The Zebrafish information network: The zebrafish model organism database. Nucleic Acids Res., 34 (Suppl. 1), D581-D585.
4. Visel,A. et al. (2007a) Enhancer identification through comparative genomics. Semin. Cell Dev. Biol., 18, 140.
5. Visel,A. et al. (2007b) VISTA enhancer browser - a database of tissue-specific human enhancers. Nucleic Acids Res., 35 (Suppl. 1), D88-D92.
6. Woolfe,A. et al. (2007) CONDOR: A database resource of developmentally associated conserved non-coding elements. BMC Dev. Biol., 7, 100.
7. Woolfe,A. et al. (2005) Highly conserved non-coding sequences are associated with vertebrate development. PLoS Biol., 3, e7.