Tranquillimonas alkanivorans gen. nov., sp. nov., an alkane-degrading bacterium isolated from Semarang Port in Indonesia

International Journal of Systematic and Evolutionary Microbiology

Volumn 58, Issue 9, 2008, Pages 2118-2121

  Harwati, Theresia Umi ^a,b   Kasai, Yuki ^a   Kodama, Yumiko ^a   Susilaningsih, Dwi ^b   Watanabe, Kazuya ^a  

^a MARINE BIOTECHNOLOGY INSTITUTE   (Japan)

^b INDONESIAN INSTITUTE OF SCIENCES   (Indonesia)

Author keywords

[No Author keywords available]

Indexed keywords

BACTERIAL DNA; BACTERIAL RNA; CATALASE; CYTIDINE; FATTY ACID; GUANOSINE; OXIDOREDUCTASE; RNA 16S; SEA WATER; UBIQUINONE; ALKANE; NITRATE; NITRITE; PIGMENT; QUINONE DERIVATIVE; RIBOSOME DNA;

ALPHAPROTEOBACTERIA; ARTICLE; BACTERIAL METABOLISM; BACTERIAL STRAIN; BACTERIUM ISOLATION; DNA CONTENT; ENZYME ACTIVITY; FATTY ACID ANALYSIS; GRAM NEGATIVE BACTERIUM; HALOPHILIC BACTERIUM; INDONESIA; NEW GENUS; NEW SPECIES; NITROGEN FIXATION; NONHUMAN; NUCLEOTIDE SEQUENCE; PALLERONIA MARISMINORIS; PHYLOGENY; PRIORITY JOURNAL; RNA SEQUENCE; SALIPIGER MUCOSUS; SEQUENCE HOMOLOGY; STRAIN DIFFERENCE; TRANQUILLIMONAS ALKANIVORANS; BACTERIUM IDENTIFICATION; BIOSYNTHESIS; CHEMISTRY; CLASSIFICATION; DNA BASE COMPOSITION; DNA SEQUENCE; GENETICS; ISOLATION AND PURIFICATION; LOCOMOTION; METABOLISM; MICROBIOLOGY; MOLECULAR GENETICS; RHODOBACTERACEAE; RNA GENE;

ALPHAPROTEOBACTERIA; BACTERIA (MICROORGANISMS); NEGIBACTERIA; PALLERONIA MARISMINORIS; RHODOBACTERACEAE; SALIPIGER MUCOSUS;

ALKANES; BACTERIAL TYPING TECHNIQUES; BASE COMPOSITION; CATALASE; DNA, BACTERIAL; DNA, RIBOSOMAL; FATTY ACIDS; GENES, RRNA; INDONESIA; LOCOMOTION; MOLECULAR SEQUENCE DATA; NITRATES; NITRITES; OXIDOREDUCTASES; PHYLOGENY; PIGMENTS, BIOLOGICAL; QUINONES; RHODOBACTERACEAE; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEAWATER; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, NUCLEIC ACID;

EID: 53749090752     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.65817-0     Document Type: Article

References (21)

1. Beveridge, T. J., Popkin, T. J. & Cole, R. M. (1994). Electron microscopy. In Methods for General and Molecular Bacteriology, pp. 42-71. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
2. Chaillan, F., Le Fleche, A., Bury, E., Phantavong, Y. H., Grimont, P., Saliot, A. & Oudot, J. (2004). Identification and biodegradation potential of tropical aerobic hydrocarbon-degrading microorganisms. Res Microbiol 155, 587-595.
3. de Lima, T. C. S., Grisi, B. M. & Bonato, M. C. M. (1999). Bacteria isolated from a sugarcane agroecosystem: their potential production of polyhydroxyalcanoates and resistance to antibiotics. Rev Microbiol 30, 214-224.
4. Harwati, T. U., Kasai, Y., Kodama, Y., Susilaningsih, D. & Watanabe, K. (2007). Characterization of diverse hydrocarbon-degrading bacteria isolated from Indonesian seawater. Microbes Environ 22, 412-415.
5. Kasai, Y., Kishira, H. & Harayama, S. (2002a). Bacteria belonging to the genus Cycloclasticus play a primary role in the degradation of aromatic hydrocarbons released in a marine environment. Appl Environ Microbiol 68, 5625-5633.
6. Kasai, Y., Kishira, H., Sasaki, T., Syutsubo, K., Watanabe, K. & Harayama, S. (2002b). Predominant growth of Alkanivorax strains in oil-contaminated nutrient supplemented seawater. Environ Microbiol 4, 141-147.
7. Katayama-Fujimura, Y., Komatsu, Y., Kuraishi, H. & Kaneko, T. (1984). Estimation of DNA base composition by high performance liquid chromatography of its nuclease P1 hydrolysate. Agric Biol Chem 48, 3169-3172.
8. Kumar, S., Tamura, K. & Nei, M. (2004). MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5, 150-163.
9. Maidak, B. L., Cole, J. R., Parker, C. T., Jr, Garrity, G.M., Larsen, N., Li, B., Lilburn, T. G., McCaughey, M. J., Olsen, G. J. & other authors (1999). A new version of the RDP (Ribosomal Database Project). Nucleic Acids Res 27, 171-173.
10. Malins, D. C., Krahn, M. M., Brown, D. W., Rhodes, L. D., Myers, M. S., McCain, B. B. & Chan, S. L. (1985). Toxic chemicals in marine sediment and biota from Mukilteo, Washington: relationships with hepatic neoplasms and other hepatic lesions in English sole (Parophrys vetulus). J Natl Cancer Inst 74, 487-494.
11. Martínez-Cánovas, M. J., Quesada, E., Martínez-Checa, F., del Moral, A. & Béjar, V. (2004). Salipiger mucescens gen. nov., sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium isolated from hypersaline soil, belonging to the α-Proteobacteria. Int J Syst Evol Microbiol 54, 1735-1740.
12. Martínez-Checa, F., Quesada, E., Martínez-Cánovas, M. J., Llamas, I. & Béjar, V. (2005). Palleronia marisminoris gen. nov., sp. nov., a moderately halophilic, exopolysaccharide-producing bacterium belonging to the 'Alphaproteobacteria', isolated from a saline soil. Int J Syst Evol Microbiol 55, 2525-2530.
13. Meador, J. P., Stein, J. E., Reichert, W. L. & Varanasi, U. (1995). Bioaccumulation of polycyclic aromatic hydrocarbons by marine organisms. Rev Environ Contam Toxicol 143, 79-165.
14. Nishimura, Y., Muroga, Y., Saito, S., Shiba, T., Takamiya, K. & Shioi, Y. (1994). DNA relatedness and chemotaxonomic features of aerobic bacteriochlorophyll-containing bacteria isolated from coasts of Australia. J Gen Appl Microbiol 40, 287-296.
15. Ozaki, S., Kishimoto, N. & Fujita, T. (2006). Isolation and phylogenetic characterization of microbial consortia able to degrade aromatic hydrocarbons at high rates. Microbes Environ 21, 44-52.
16. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-655. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
17. Sohn, J. H., Kwon, K. K., Kang, J.-H., Jung, H.-B. & Kim, S.-J. (2004). Novosphingobium pentaromativorans sp. nov., a high-molecular-mass polycyclic aromatic hydrocarbon-degrading bacterium isolated from estuarine sediment. Int J Syst Evol Microbiol 54, 1483-1487.
18. Suzuki, T., Muroga, Y., Takahama, M. & Nishimura, Y. (1999). Roseivivax halodurans gen. nov., sp. nov., and Roseivivax halotolerans sp. nov., aerobic bacteriochlorophyll-containing bacteria isolated from a saline lake. Int J Syst Bacteriol 49, 629-634.
19. Thompson, J. D., Gibson, T. J., Plewniak, K., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
20. Zhuang, W.-Q., Tay, J.-H., Maszenan, A. M. & Tay, S. T.-L. (2003). Isolation of naphthalene-degrading bacteria from tropical marine sediments. Water Sci Technol 47 1, 303-308.
21. Zinjarde, S. S. & Pant, A. A. (2002). Hydrocarbon degraders from tropical marine environments. Mar Pollut Bull 44, 118-121.