Modeling the fitness of plant morphologies across three levels of complexity

BioSystems

Volumn 94, Issue 1-2, 2008, Pages 182-190

  Watson, James ^a   Hanan, Jim ^a   Wiles, Janet ^a  

^a UNIVERSITY OF QUEENSLAND   (Australia)

Author keywords

Evolution; Modeling; Morphology; Simulation

Indexed keywords

COMPLEXITY; EVOLUTION; FITNESS; MODELING; MORPHOLOGY; PHENOTYPE; PLANT;

ARTICLE; GENE CONTROL; GENE MAPPING; GENE MUTATION; MATHEMATICAL MODEL; PHENOTYPE; PLANT DEVELOPMENT; PLANT GENETICS; PLANT MORPHOLOGY;

EMBRYOPHYTA;

EID: 53749084363     PISSN: 03032647     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.biosystems.2008.05.023     Document Type: Article

References (18)

1. Banzhaf W. On the dynamics of an artificial regulatory network. Lecture Notes in Artificial Intelligence 2801 (2003) 217-227
2. Berleth T., Scarpella E., and Prusinkiewicz P. Towards the systems biology of auxin-transport-mediated patterning. Trends in Plant Science 12 4 (2007) 151-159
3. Bongard, J.C., Pfeifer, R., 2003. Evolving complete agents using artificial ontogeny. In: Morpho-functional Machines: The New Species (Designing Embodied Intelligence). Springer-Verlag, pp. 237-258.
4. Bornholdt S. Modeling genetic networks and their evolution: a complex dynamical systems perspective. Biological Chemistry 382 (2001) 1289-1299
5. Coen E., Rolland-Lagan A.-G., Matthews M., Bangham A., and Prusinkiewicz P. The genetics of geometry. Proceedings of the National Academy of Sciences 101 14 (2004) 4728-4735
6. Hallinan J., Bradley D., and Wiles J. Effects of constitutive gene expression on the dynamics of random Boolean networks. IEEE Congress on Evolutionary Computation (2006) 2355-2361
7. Kafatos F.C., and Eisner T. Unification in the century of biology. Science 303 (2004) 1257
8. Kuo P.D., Leier A., and Banzhaf W. Evolving dynamics in an artificial regulatory network model. Lecture Notes in Computer Science 3242 (2004) 571-580
9. Mendoza L., and Alvarez-Buylla E.R. Dynamics of the genetic regulatory network for Arabidopsis thaliana flower morphogenesis. Journal of Theoretical Biology 193 (1998) 307-319
10. Mitchell M. An Introduction to Genetic Algorithms (1996), MIT Press, Cambridge, MA
11. Niklas K. Adaptive walks through fitness landscapes for early vascular land plants. American Journal of Botany 84 1 (1997) 16-25
12. Pennisi E. A genomic view of animal behaviour. Science 307 (2005) 30-32
13. Prusinkiewicz P., Erasmus Y., Lane B., Harder L.D., and Coen E. Evolution and development of inflorescence architectures. Science 316 5830 (2007) 1452-1456
14. Quayle A., and Bullock S. Modelling the evolution of genetic regulatory networks. Journal of Theoretical Biology 238 4 (2006) 737-753
15. Quick T., Nehaniv C.L., Dautenhahn K., and Roberts G. Evolving embodied genetic regulatory network-driven control systems. Lecture Notes in Computer Science 2801 (2003) 266-277
16. Reil T. Dynamics of gene expression in an artificial genome-implications for biological and artificial ontogeny. In: Floreano D., Mondada F., and Nicoud J. (Eds). Proceedings of the 5th European Conference on Artificial Life (1999), Springer-Verlag 457-466
17. Reinhardt D. Phyllotaxis-a new chapter in an old tale about beauty and magic numbers. Current Opinion in Plant Biology 8 5 (2005) 487-493
18. Watson J., Geard N., and Wiles J. Towards more biological mutation operators in gene regulation studies. Biosystems 76 1-3 (2004) 239-248