Determination of human rotavirus VP6 genogroups I and II by reverse transcription-PCR

Journal of Clinical Microbiology

Volumn 46, Issue 10, 2008, Pages 3330-3337

  Lin, Yi Pei ^a   Kao, Chuan Liang ^a,b   Chang, Sui Yuan ^a,b   Taniguchi, Koki ^c   Hung, Pei Yung ^a   Lin, Hsueh Ching ^a   Huang, Li Min ^b   Huang, Hsueh Hung ^b   Yang, Jyh Yuan ^d   Lee, Chun Nan ^a,b  

^a NATIONAL TAIWAN UNIVERSITY   (Taiwan)

^b NATIONAL TAIWAN UNIVERSITY HOSPITAL   (Taiwan)

^c FUJITA HEALTH UNIVERSITY SCHOOL OF MEDICINE   (Japan)

^d CENTER FOR DISEASE CONTROL   (Taiwan)

Author keywords

[No Author keywords available]

Indexed keywords

PROTEIN VP4; PROTEIN VP6; PROTEIN VP7; ROTAVIRUS NONSTRUCTURAL PROTEIN 4; ROTAVIRUS VACCINE;

AMPLICON; ARTICLE; CONTROLLED STUDY; ENZYME LINKED IMMUNOSORBENT ASSAY; FECES ANALYSIS; FEMALE; GENOTYPE; HUMAN; HUMAN ROTAVIRUS; MAJOR CLINICAL STUDY; MALE; NONHUMAN; NUCLEOTIDE SEQUENCE; PHYLOGENY; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION;

ANTIGENS, VIRAL; CAPSID PROTEINS; FECES; GENOTYPE; GLYCOPROTEINS; HUMANS; MOLECULAR SEQUENCE DATA; PHYLOGENY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, VIRAL; ROTAVIRUS; ROTAVIRUS INFECTIONS; SEQUENCE ANALYSIS, DNA; SEQUENCE HOMOLOGY, AMINO ACID; TOXINS, BIOLOGICAL; VIRAL NONSTRUCTURAL PROTEINS;

HUMAN ROTAVIRUS A; ROTAVIRUS; ROTAVIRUS A;

EID: 53649101783     PISSN: 00951137     EISSN: None     Source Type: Journal    
DOI: 10.1128/JCM.00432-08     Document Type: Article

References (33)

1. Au, K. S., W. K. Chan, J. W. Burns, and M. K. Estes. 1989. Receptor activity of rotavirus nonstructural glycoprotein NS28. J. Virol. 63:4553-4562.
2. Ball, J. M., P. Tian, C. Q. Zeng, A. P. Morris, and M. K. Estes. 1996. Age-dependent diarrhea induced by a rotaviral nonstructural glycoprotein. Science 272:101-104.
3. Ciarlet, M., F. Liprandi, M. E. Conner, and M. K. Estes. 2000. Species specificity and interspecies relatedness of NSP4 genetic groups by comparative NSP4 sequence analyses of animal rotaviruses. Arch. Virol. 145:371-383.
4. Cunliffe, N. A., P. A. Woods, J. P. Leite, B. K. Das, M. Ramachandran, M. K. Bhan, C. A. Hart, R. I. Glass, and J. R. Gentsch. 1997. Sequence analysis of NSP4 gene of human rotavirus allows classification into two main genetic groups. J. Med. Virol. 53:41-50.
5. Estes, M. K. 2001. Rotaviruses and their replication, p. 1747-1785. In D. M. Knipe, D. E. Griffin, R. A. Lamb, M. A. Martin, B. Roizman, and S. E. Straus (ed.), Fields virology, 4th ed. Lippincott/Williams & Wilkins, Philadelphia, PA.
6. Estes, M. K. 1996. Rotaviruses and their replication, p. 1625-1655. In B. N. Fields, P. M. Howley, R. M. Chanock, J. L. Melnick, T. P. Monath, B. Roizman, and S. E. Straus (ed.), Fields virology, 3rd ed. Lippincott/Raven Press, Philadelphia, PA.
7. Estes, M. K., and J. Cohen. 1989. Rotavirus gene structure and function. Microbiol. Rev. 53:410-449.
8. Gentsch, J. R., R. I. Glass, P. Woods, V. Gouvea, M. Gorziglia, J. Flores, B. K. Das, and M. K. Bhan. 1992. Identification of group A rotavirus gene 4 types by polymerase chain reaction. J. Clin. Microbiol. 30:1365-1373.
9. Gorziglia, M., Y. Hoshino, K. Nishikawa, W. L. Maloy, R. W. Jones, A. Z. Kapikian, and R. M. Chanock. 1988. Comparative sequence analysis of the genomic segment 6 of four rotaviruses each with a different subgroup specificity. J. Gen. Virol. 69(Pt. 7):1659-1669.
10. Gouvea, V., R. I. Glass, P. Woods, K. Taniguchi, H. F. Clark, B. Forrester, and Z. Y. Fang. 1990. Polymerase chain reaction amplification and typing of rotavirus nucleic acid from stool specimens. J. Clin. Microbiol. 28:276-282.
11. Greenberg, H., V. McAuliffe, J. Valdesuso, R. Wyatt, J. Flores, A. Kalica, Y. Hoshino, and N. Singh. 1983. Serological analysis of the subgroup protein of rotavirus, using monoclonal antibodies. Infect. Immun. 39:91-99.
12. Gulati, B. R., R. Deepa, B. K. Singh, and C. D. Rao. 2007. Diversity in Indian equine rotaviruses: identification of genotype G10,P6[1] and G1 strains and a new VP7 genotype (G16) strain in specimens from diarrheic foals in India. J. Clin. Microbiol. 45:972-978.
13. Horie, Y., O. Masamune, and O. Nakagomi. 1997. Three major alleles of rotavirus NSP4 proteins identified by sequence analysis. J. Gen. Virol. 78(Pt. 9):2341-2346.
14. Hoshino, Y., M. Gorziglia, J. Valdesuso, J. Askaa, R. I. Glass, and A. Z. Kapikian. 1987. An equine rotavirus (FI-14 strain) which bears both subgroup I and subgroup II specificities on its VP6. Virology 157:488-496.
15. Hoshino, Y., R. G. Wyatt, H. B. Greenberg, A. R. Kalica, J. Flores, and A. Z. Kapikian. 1983. Isolation, propagation, and characterization of a second equine rotavirus serotype. Infect. Immun. 41:1031-1037.
16. Iturriza-Gomara, M., E. Anderton, G. Kang, C. Gallimore, W. Phillips, U. Desselberger, and J. Gray. 2003. Evidence for genetic linkage between the gene segments encoding NSP4 and VP6 proteins in common and reassortant human rotavirus strains. J. Clin. Microbiol. 41:3566-3573.
17. Iturriza-Gomara, M., B. Isherwood, U. Desselberger, and J. Gray. 2001. Reassortment in vivo: driving force for diversity of human rotavirus strains isolated in the United Kingdom between 1995 and 1999. J. Virol. 75:3696-3705.
18. Iturriza-Gomara, M., C. Wong, S. Blome, U. Desselberger, and J. Gray. 2002. Molecular characterization of VP6 genes of human rotavirus isolates: correlation of genogroups with subgroups and evidence of independent segregation. J. Virol. 76:6596-6601.
19. Iturriza-Gomara, M., C. Wong, S. Blome, U. Desselberger, and J. Gray. 2002. Rotavirus subgroup characterisation by restriction endonuclease digestion of a cDNA fragment of the VP6 gene. J. Virol. Methods 105:99-103.
20. Kalica, A. R., H. B. Greenberg, R. T. Espejo, J. Flores, R. G. Wyatt, A. Z. Kapikian, and R. M. Chanock. 1981. Distinctive ribonucleic acid patterns of human rotavirus subgroups 1 and 2. Infect. Immun. 33:958-961.
21. Kerin, T. K., E. M. Kane, R. I. Glass, and J. R. Gentsch. 2007. Characterization of VP6 genes from rotavirus strains collected in the United States from 1996-2002. Virus Genes 35:489-495.
22. Khamrin, P., N. Maneekarn, S. Peerakome, W. Chan-it, F. Yagyu, S. Okitsu, and H. Ushijima. 2007. Novel porcine rotavirus of genotype P[27] shares new phylogenetic lineage with G2 porcine rotavirus strain. Virology 361:243-252.
23. Kumar, S., K. Tamura, and M. Nei. 2004. MEGA3: integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform. 5:150-163.
24. Lee, C. N., Y. L. Wang, C. L. Kao, C. L. Zao, C. Y. Lee, and H. N. Chen. 2000. NSP4 gene analysis of rotaviruses recovered from infected children with or without diarrhea. J. Clin. Microbiol. 38:4471-4477.
25. Lin, Y. P., S. Y. Chang, C. L. Kao, L. M. Huang, M. Y. Chung, J. Y. Yang, H. Y. Chen, K. Taniguchi, K. S. Tsai, and C. N. Lee. 2006. Molecular epidemiology of G9 rotaviruses in Taiwan between 2000 and 2002. J. Clin. Microbiol. 44:3686-3694.
26. Mathieu, M., I. Petitpas, J. Navaza, J. Lepault, E. Kohli, P. Pothier, B. V. Prasad, J. Cohen, and F. A. Rey. 2001. Atomic structure of the major capsid protein of rotavirus: implications for the architecture of the virion. EMBO J. 20:1485-1497.
27. Matsui, S. M., E. R. Mackow, and H. B. Greenberg. 1989. Molecular determinant of rotavirus neutralization and protection. Adv. Virus Res. 36:181-214.
28. Mori, Y., M. A. Borgan, N. Ito, M. Sugiyama, and N. Minamoto. 2002. Diarrhea-inducing activity of avian rotavirus NSP4 glycoproteins, which differ greatly from mammalian rotavirus NSP4 glycoproteins in deduced amino acid sequence in suckling mice. J. Virol. 76:5829-5834.
29. Svensson, L., L. Grahnquist, C. A. Pettersson, M. Grandien, G. Stintzing, and H. B. Greenberg. 1988. Detection of human rotaviruses which do not react with subgroup I- and II-specific monoclonal antibodies. J. Clin. Microbiol. 26:1238-1240.
30. Tang, B., J. M. Gilbert, S. M. Matsui, and H. B. Greenberg. 1997. Comparison of the rotavirus gene 6 from different species by sequence analysis and localization of subgroup-specific epitopes using site-directed mutagenesis. Virology 237:89-96.
31. Taniguchi, K., T. Urasawa, S. Urasawa, and T. Yasuhara. 1984. Production of subgroup-specific monoclonal antibodies against human rotaviruses and their application to an enzyme-linked immunosorbent assay for subgroup determination. J. Med. Virol. 14:115-125.
32. Tian, P., M. K. Estes, Y. Hu, J. M. Ball, C. Q. Zeng, and W. P. Schilling. 1995. The rotavirus nonstructural glycoprotein NSP4 mobilizes Ca2+ from the endoplasmic reticulum. J. Virol. 69:5763-5772.
33. Wyatt, R. G., H. B. Greenberg, W. D. James, A. L. Pittman, A. R. Kalica, J. Flores, R. M. Chanock, and A. Z. Kapikian. 1982. Definition of human rotavirus serotypes by plaque reduction assay. Infect. Immun. 37:110-115.