Comparison of the rotavirus gene 6 from different species by sequence analysis and localization of subgroup-specific epitopes using site-directed mutagenesis

Virology

Volumn 237, Issue 1, 1997, Pages 89-96

  Tang, Baozhang ^a   Gilbert, Joanna M ^a   Matsui, Suzanne M ^a,b   Greenberg, Harry B ^a,b  

^a STANFORD UNIVERSITY SCHOOL OF MEDICINE   (United States)

^b VA PALO ALTO HEALTH CARE SYSTEM   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EPITOPE;

AMINO ACID SEQUENCE; ARTICLE; CONTROLLED STUDY; GENE REARRANGEMENT; GENETIC VARIABILITY; IMMUNOPRECIPITATION; MUTAGENESIS; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; ROTAVIRUS; SEQUENCE ANALYSIS; SITE DIRECTED MUTAGENESIS;

EQUIDAE; MIRIDAE; ROTAVIRUS;

EID: 0030668602     PISSN: 00426822     EISSN: None     Source Type: Journal    
DOI: 10.1006/viro.1997.8762     Document Type: Article

References (32)

1. Both G. W., Siegman L. J., Bellamy A. R., Ikegami N., Shatkin A. J., Furuichi Y. Comparative sequence analysis of rotavirus genomic segment 6 - The gene specifying viral subgroups 1 and 2. J. Virol. 51:1984;97-101.
2. Burke B., McCrae M. A., Desselberger U. Sequence analysis of two porcine rotaviruses differing in growth in vitro and in pathogenicity: distinct VP4 sequences and conservation of NS53, VP6 and VP7 genes. J. Gen. Virol. 75:1994;2205-2212.
3. Clapp L. L., Patton J. T. Rotavirus morphogenesis: Domains in the major inner capsid protein essential for binding to single-shelled particles and for trimerization. Virology. 180:1991;697-708.
4. Cohen J., Lefevre F., Estes M. K., Bremont M. Cloning of bovine rotavirus (RF strain): Nucleotide sequence of the gene coding for the major capsid protein. Virology. 138:1984;178-182.
5. Elroy S. O., Fuerst T. R., Moss B. Cap-independent translation of mRNA conferred by encephalomyocarditis virus 5′ sequence improves the performance of the vaccinia virus/bacteriophage T7 hybrid expression system. Proc. Natl. Acad. Sci. USA. 86:1989;6126-6130.
6. Estes M. K., Cohen J. Rotavirus gene structure and function. Microbiol. Rev. 53:1989;410-449.
7. Estes M. K., Mason B. B., Crawford S., Cohen J. Cloning and nucleotide sequence of the simian rotavirus gene 6 that codes for the major inner capsid protein. Nucleic Acids Res. 12:1984;1875-1887.
8. Fuerst T. R., Niles E. G., Studier F. W., Moss B. Eukaryotic transient-expression system based on recombinant vaccinia virus that synthesizes bacteriophage T7 RNA polymerase. Proc. Natl. Acad. Sci. USA. 83:1986;8122-8126.
9. Gonzalez S. A., Tomasini L., Tortorici M. A., Affranchino J. L. VP6 from porcine rotavirus strain CN86: Amino acid sequence divergence with conservation of subgroup II specificity. J. Gen. Virol. 76:1995;221-224.
10. Gorziglia M., Hoshino Y., Nishikawa K., Maloy W. L., Jones R. W., Kapikian A. Z., Chanock R. M. Comparative sequence analysis of the genomic segment 6 of four rotaviruses each with a different subgroup specificity. J. Gen. Virol. 69:1988;1659-1669.
11. Greenberg H. B., McAuliffe V., Valdesuso J., Wyatt R., Flores J., Kalica A., Hoshino Y., Singh N. Serological analysis of the subgroup protein of rotavirus, using monoclonal antibodies. Infect. Immun. 39:1983;91-99.
12. Hofer J. M., Sato F., Street J. E., Bellamy A. R. Nucleotide sequence for gene 6 of rotavirus strain S2. Nucleic Acids Res. 15:1987;7175.
13. Ishida S., Feng N., Gilbert J. M., Tang B., Greenberg H. B. Immune responses to individual rotavirus proteins following heterologous and homologous rotavirus infection in mice. J. Infect. Dis. 175:1997;1317-1323.
14. Ito H., Minamoto N., Sasaki I., Goto H., Sugiyama M., Kinjo T., Sugita S. Sequence analysis of cDNA for the VP6 protein of grou a comparison with group A mammalian rotaviruses. Arch. Virol. 140:1995;605-612.
15. Kapikian A. Z., Chanock R. M. Rotaviruses. Fields Virology. 1996;Lippincott-Raven Publishers, Philadelphia. p. 1657-1708.
16. Kimura M. A simple method for estimating evolutionary rates of base substitutions through comparative studies of nucleotide sequences. J. Mol. Evol. 16:1980;111-120.
17. Kool D. A., Matsui S. M., Greenberg H. B., Holmes I. H. Isolation and characterization of a novel reassortant between avian Ty-1 and simian RRV rotaviruses. J. Virol. 66:1992;6836-6839.
18. Kunkel T. A., Roberts J. D., Zakour R. A. Rapid and efficient site-specific mutagenesis without phenotypic selection. Methods Enzymol. 154:1987;367-382.
19. Liprandi F., Lopez G., Rodriguez I., Hidalgo M., Ludert J. E., Mattion N. Monoclonal antibodies to the VP6 of porcine subgroup I rotaviruses reactive with subgroup I and non-subgroup I non-subgroup II strains. J. Gen. Virol. 71:1990;1395-1398.
20. Lopez S., Arias C. F. Sequence analysis of rotavirus YM VP6 and NS28 proteins. J. Gen. Virol. 74:1993;1223-1226.
21. Lopez S., Espinosa R., Greenberg H. B., Arias C. F. Mapping the subgroup epitopes of rotavirus protein VP6. Virology. 204:1994;153-162.
22. Meyer J. C., Bergmann C. C., Bellamy A. R. Interaction of rotavirus cores with the nonstructural glycoprotein NS28. Virology. 171:1989;98-107.
23. Needleman S. B., Wunsch C. D. A general method applicable to the search for similarities in the amino acid sequence of two proteins. J. Mol. Biol. 48:1970;443-453.
24. Palombo E. A., Bishop R. F. Sequences of VP6 genes of human rotavirus strain RV3 and its vaccine derivative. J. Gen. Virol. 75:1994;2415-2419.
25. Patton J. T., Salter C. L., Kalbach A., Mansell E. A., Kattoura M. Nucleotide and amino acid sequence analysis of the rotavirus nonstructural RNA-binding protein NS35. Virology. 192:1993;438-446.
26. Rohwedder A., Irmak H., Werchau H., Brussow H. Nucleotide sequence of gene 6 of avian-like group A rotavirus 993/83. Virology. 195:1993;820-825.
27. Sanger F., Nicklen S., Coulson A. R. DNA sequencing with chain-terminating inhibitors. Proc. Natl. Acad. Sci. USA. 74:1977;5463-5467.
28. Shaw A. L., Rothnagel R., Chen D., Ramig R. F., Chiu W., Prasad B. V. Three-dimensional visualization of the rotavirus hemagglutinin structure. Cell. 74:1993;693-701.
29. Shen S., Burke B., Desselberger U. Rearrangement of the VP6 gene of a group A rotavirus in combination with a point mutation affecting trimer stability. J. Virol. 68:1994;1682-1688.
30. Tarlow O., McCrae M. A. Nucleotide sequence of group antigen (VP6) of the UK tissue adapted strain of bovine rotavirus. Nucleic Acids Res. 18:1990;4921.
31. Tosser G., Labbe M., Bremont M., Cohen J. Expression of the major capsid protein VP6 of group C rotavirus and synthesis of chimeric single-shelled particles by using recombinant baculoviruses. J. Virol. 66:1992;5825-5831.
32. Vieira J., Messing J. Production of single-stranded plasmid DNA. Methods Enzymol. 153:1987;3-11.