Hydrological effects on the diversity of phenolic degrading bacteria in a peatland: Implications for carbon cycling

Soil Biology and Biochemistry

Volumn 37, Issue 7, 2005, Pages 1277-1287

  Fenner, Nathalie ^a   Freeman, Christopher ^a   Reynolds, Brian ^a  

^a BANGOR UNIVERSITY   (United Kingdom)

Author keywords

Bacterial diversity; Carbon cycling; Catechol 2,3 dioxygenase; Decomposition; DOC; Peatland; Phenolic degradation; Temperature gradient gel electrophoresis; Water quality

Indexed keywords

BACTERIA; CARBON; CLIMATE CHANGE; DECOMPOSITION; DROUGHT; ENZYME KINETICS; HYDROLOGY; PHENOLS; RAIN; SOILS;

ANAEROBIC CONDITIONS; PEATLANDS; PHENOLIC DEGRADATION; RAINFALL SIMULATION;

BIODEGRADATION;

CARBON CYCLE; DEGRADATION; HYDROLOGICAL REGIME; ORGANIC CARBON; PEATLAND;

EID: 16344385835     PISSN: 00380717     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.soilbio.2004.11.024     Document Type: Article

References (67)

1. R. Aerts, and F. Ludwig Water-table changes and nutritional status affect trace gas emissions from laboratory columns of peatland soils Soil Biology & Biochemistry 29 1997 1691 1698
2. M.T. Alarcon-Herrera, J.K. Bewtra, and N. Biswas Seasonal variations in humic substances and their reduction through water treatment processes Canadian Journal of Civil Engineering 21 1994 173 179
3. H.M. Appel Phenolics in ecological interactions: the importance of oxidation Journal of Chemical Ecology 19 1993 1521 1553
4. P. Bottner Response of microbial biomass to alternate moist and dry conditions in a soil incubated with 14C- and 15N-labeled plant material Soil Biology & Biochemistry 17 1985 329 337
5. J.D. Box Investigation of the Folin-Ciocalteau phenol reagent for the determination of the polyphenolic substances in natural waters Water Research 17 1983 249 261
6. R.J. Chróst, and H.J. Krambeck Fluorescence correction for measurements of enzyme activities in natural waters using methylumbelliferyl- substrates Archiv für Hydrobiologie 106 1986 79 90
7. T.A. Clair, J.M. Ehrmam, and K. Higuchi Changes in freshwater carbon exports from Canadian terrestrial basins to lakes and estuaries under 2xCO(2) atmospheric scenario Global Biogeochemical Cycles 13 1999 1091 1097
8. J. Clein, and J.P. Schimel Reduction in microbial activity in Birch litter due to drying and rewetting events Soil Biology & Biochemistry 26 1994 403 406
9. R.S. Clymo Peat A.J.P. Gore Mires: Swamp, Bog, Fen and Moor (Ecosystems of the world 4A) 1983 Elsevier Amsterdam 159 224
10. P.J. Colberg Anaerobic microbial degradation of cellulose, lignin, oligolignols, and monoaromatic lignin derivatives A.J.B. Zehnder Biology of Anaerobic Microorganisms 1988 Wiley Chichester 333 372
11. S. Dagley Biochemistry of aromatic hydrocarbon degradation in Pseudomonads I.C. Gunsalus J.R. Sokatch L.N. Ornston The Bacteria vol. 10 1986 Academic Press New York 527 556
12. S. Dagley Catabolism of aromatic compounds by microorganisms Advances in Microbial Physiology 61 1971 1 76
13. R.H. Don, P.T. Cox, B.J. Wainwright, K. Baker, and J.S. Mattick Touchdown PCR to circumvent spurious priming during gene amplification Nucleic Acids Research 19 1991 4008
14. D.J.E. Elder, and D.J. Kelly The bacterial degradation of benzoic acid and benzenoid compounds under anaerobic conditions: unifying trends and new perspectives FEMS Microbiology Reviews 13 1994 441 468
15. C.D. Evans, C. Freeman, D.T. Monteith, B. Reynolds, and N. Fenner Terrestrial export of organic carbon Nature 415 2002 862
16. N. Fenner, C. Freeman, S. Hughes, and B. Reynolds Molecular weight spectra of dissolved organic carbon in a rewetted Welsh peatland and possible implications for water quality Soil Use and Management 17 2001 106 112
17. C. Forsberg Will an increased greenhouse impact in Fennoscandia give rise to more humic and coloured lakes? Hydrobiologia 229 1992 51 58
18. C. Freeman, M.A. Lock, J. Marxsen, and S.E. Jones Inhibitory effects of high molecular weight dissolved organic matter upon metabolic processes of biofilms from contrasting rivers and streams Freshwater Biology 24 1990 159 166
19. Freeman, C., Hudson, J., Lock, M.A., Reynolds, B., 1993a. A field-based approach to investigating potential impacts of drought induced by climatic change upon wetlands, Extreme Hydrological Events: Precipitation, Floods and Droughts (Proceedings of the Yokohama Symposium, July 1993). IAHS Publication Number 213.
20. C. Freeman, M.A. Lock, and B. Reynolds Impacts of climatic change on peatland hydrochemistry; a laboratory based experiment Chemistry and Ecology 8 1993 49 59
21. C. Freeman, J. Hawkins, M.A. Lock, and B. Reynolds A laboratory perfusion system for the study of biogeochemical responses of wetlands to climatic change B. Gopal A. Hillbricht-Ilkowska R.G. Wetzel Wetlands and Ecotones: Studies on Land-Water Interactions 1993 N.I.E. New Delhi 75 84
22. C. Freeman, M.A. Lock, and B. Reynolds A potential impact of climatic change upon the transport of organic carbon from wetland to ocean Verhandlungen Internationale Vereinigung für Theoretische und Angewandte Limnologie 25 1994 1318 1321
23. C. Freeman, G. Liska, N.J. Ostle, S.E. Jones, and M.A. Lock The use of fluorogenic substrates for measuring enzyme activity in peatlands Plant and Soil 175 1995 147 152
24. C. Freeman, G.B. Nevison, S. Hughes, B. Reynolds, and J. Hudson Enzymic involvement in the biogeochemical responses of a Welsh peatland to a rainfall enhancement manipulation Biology and Fertility of Soils 27 1998 173 178
25. C. Freeman, N. Ostle, and H. Kang An enzymic 'latch' on a global carbon store Nature 409 2001 149
26. C. Freeman, C.D. Evans, D.T. Monteith, B. Reynolds, and N. Fenner Export of organic carbon from peat soils Nature 412 2001 785
27. C. Freeman, N.J. Ostle, N. Fenner, and H. Kang A regulatory role for phenol oxidase during decomposition in peatlands Soil Biology & Biochemistry 36 2004 1663 1667
28. K. Gilman, and M.D. Newson Soil Pipes and Pipeflow: A Hydrological Study in Upland Wales British Geomorphological Research Group. Research Monograph 1 1980 Geobooks Norwich, UK
29. S. Harayama, and K.N. Timmis Aerobic biodegradation of aromatic hydrocarbons by bacteria H. Sigel A. Sigal Metal Ions in Biological Systems Degradation of environmental pollutants by microorganisms and their metalloenzymes vol. 28 1992 Marcel Dekker New York 99 156
30. C.S. Harwood, and R.E. Parales The β-ketoadipate pathway and the biology of self-identity Annual Review of Microbiology 50 1996 553 590
31. H.G. Hoppe Significance of exoenzyme activities in the ecology of brackish water: measurement by means of methylumbelliferyl substrates Marine Ecology and Progress Series 11 1983 299 308
32. J.T. Houghton Y. Ding D.J. Griggs M. Noguer P.J. van der Linden X. Dai Climate Change 2001: The Scientific Basis. Contribution of Working Group I to the Third Assessment Report of the Intergovernmental Panel on Climate Change 2001 Cambridge University Press Cambridge
33. S. Hughes, B. Reynolds, and J.A. Hudson Release of bromide following rewetting of a naturally drained acid gully mire Soil Use and Management 12 1996 62 66
34. S. Hughes, B. Reynolds, J.A. Hudson, and C. Freeman Effects of summer drought on peat soil solution chemistry in an acid gully mire Hydrology and Earth System Sciences 1 1997 661 669
35. S. Hughes, C. Freeman, B. Reynolds, and J.A. Hudson The effects of increased drought frequency on sulphate and dissolved organic carbon in peatland dominated catchments R. Lemmela N. Helenius Proceedings of the Second International Conference on Climate and Water 1, Edita Limited, Helsinki 1998 311 319
36. S. Hughes, B. Reynolds, S.A. Brittain, J.A. Hudson, and C. Freeman Temporal trends in bromide release following rewetting of a naturally drained gully mire Soil Use and Management 14 1998 248 250
37. S. Hughes, D. Dowerick, C. Freeman, J.A. Hudson, and B. Reynolds Methane emissions from an acid gully mire in mid-Wales, UK under consecutive summer water table drawdown Environmental Science and Technology 33 1999 362 365
38. M. Hulme, G.J. Jenkins, X. Lu, J.R. Turnpenny, T.D. Mitchell, and R.G. Jones Climate Change Scenarios for the United Kingdom: The UKCIP02 Scientific Report 2002 Tyndell Centre for Climate Change Research, School of Environmental Sciences, University of Anglia Norwich, UK, p. 120
39. L.T. Kieft, E. Soroker, and M.K. Firestone Microbial biomass response to a rapid increase in water potential when a dry soil is wetted Soil Biology & Biochemistry 19 1987 119 126
40. G.M. King Characterization of β-glucosidase activity in intertidal marine sediments Applied and Environmental Microbiology 51 1986 373 380
41. K.B. Krauskopf, and D.K. Bird Introduction to Geochemistry third ed. 1995 McGraw-Hill International Editions, Earth Science and Geology Series
42. A.E. Lugo, S. Brown, and M.M. Brinson Concepts in wetland ecology A.E. Lugo M.M. Brinson S. Brown Forested Wetlands (Ecosystems of the World 15) 1989 Elsevier Amsterdam 53 85
43. H.S. Mason The chemistry of melanin III. Mechanism of the oxidation of dihydroxyphenylalanine by tyrosinase Journal of Biological Chemistry 172 1948 83 99
44. S.P. Mathur, and M. Lavesqué Negative effect of depth on saturated hydraulic conductivity of histosols Soil Science 140 1985 462 466
45. G.P. McLatchey, and K.R. Reddy Wetlands and aquatic processes. Regulation of organic matter decomposition and nutrient release in a wetland soil Journal of Environmental Quality 27 1998 1268 1274
46. W.J. Mitsch, and J.G. Gosselink Wetlands third ed. 2000 Van Nostrand Reinhold New York, p. 920
47. T.R. Moore Dynamics of dissolved organic carbon in forested and disturbed catchments, Westland, New Zealand. i. Maimai Water Resource Research 25 1989 1321 1330
48. G. Muyzer, E.C. De Waal, and A.G. Uitterlinden Profiling of complex microbial populations by denaturing gradient gel electrophoresis analysis of polymerase chain reaction-amplified genes coding for 16S rRNA Applied and Environmental Microbiology 59 1993 695 700
49. R.M. Myers, S.G. Fischer, L.S. Lerman, and T. Maniatis Nearly all single base substitutions in DNA fragments joined to a GC-clamp can be detected by Denaturing Gradient Gel-Electrophoresis Nucleic Acids Research 13 1985 3131 3145
50. A.B. Orth, M. Denny, and M. Tien Overproduction of lignin-degrading enzymes by an isolate of Phanerochaete chrysosporium Applied and Environmental Microbiology 57 1991 2591 2596
51. E.A. Paul, and F.E. Clark Soil Microbiology and Biochemistry 1996 Academic Press London
52. A. Pind, C. Freeman, and M.A. Lock Enzymic degradation of phenolic materials in peatlands - measurement of phenol oxidase activity Plant and Soil 159 1994 227 231
53. F.M. Ponnamperuma The chemistry of submerged soils Advances in Agronomy 24 1972 29 96
54. M. Prevost, P. Belleau, and A.P. Plamondon Substrate conditions in a treed peatland: responses to drainage Ecoscience 4 1997 543 554
55. D. Scanlon, and T. Moore Carbon dioxide production from peatland soil profiles: the influence of temperature, oxic/anoxic conditions and substrate Soil Science 165 2000 153 160
56. J.P. Schimel, and J. Gulledge Microbial community structure and global trace gases Global Change Biology 4 1998 745 758
57. R.L. Sinsabaugh, and A.E. Linkins Adsorption of cellulase components by leaf litter Soil Biology & Biochemistry 20 1988 927 931
58. R.L. Sinsabaugh, R.K. Antibus, and A.E. Linkins An enzymic approach to the analysis of microbial activity during plant litter decomposition Agriculture, Ecosystems and Environment 34 1991 43 54
59. E. Stackebrandt, and B.M. Goebel Taxonomic note: a place for DNA-DNA reassociation and 16S rRNA sequence analysis in the present species definition in bacteriology International Journal of Systematic Bacteriology 44 1994 846 849
60. R.Y. Stainer, J.L. Ingraham, M.L. Wheelis, and P.R. Painter The Microbial World fifth ed. 1986 Prentice-Hall Englewood Cliffs, NJ, pp. 78-101
61. A. Streitwieser Jr., and C.H. Heathcock Introduction to Organic Chemistry third ed. 1985 Collier Macmillan London
62. E. Tipping, and C. Woof Humic substances in acid organic soils: modelling their release to the soil solution in terms of humic charge Journal of Soil Science 41 1990 573 586
63. E. Tipping, C. Woof, E. Rigg, A.F. Harrison, P. Ineson, K. Taylor, D. Benham, J. Poskitt, A.P. Rowland, R. Bol, and D.D. Harkness Climatic influences on the leaching of dissolved organic matter from upland UK moorland soils, investigated by a field manipulation experiment Environment International 25 1999 83 95
64. J.F. Weltzin, C. Harth, S.D. Bridgham, J. Pastor, and M. Vonderharr Production and microtopography of bog bryophytes: response to warming and water-table manipulations Oecologia 128 2001 557 565
65. R.G. Wetzel Gradient dominated ecosystems: sources and regulatory functions of dissolved organic matter in freshwater ecosystems Hydrobiologia 229 1992 181 198
66. P.A. Williams, and J.R. Sayers The evolution of pathways for aromatic hydrocarbon oxidation in Pseudomonas Biodegradation 5 1994 195 217
67. F. Worrall, T.P. Burt, R.Y. Jaeban, J. Warburton, and R. Shedden Release of dissolved organic carbon from upland peat Hydrological Processes 16 2002 3487 3504