Microbial Diagnostic Array Workstation (MDAW): A web server for diagnostic array data storage, sharing and analysis

Source Code for Biology and Medicine

Volumn 3, Issue , 2008, Pages

  Scaria, Joy ^a   Sreedharan, Aswathy ^a   Chang, Yung Fu ^a  

^a Department of Obstetrics Gynecology   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

EID: 53549105518     PISSN: None     EISSN: 17510473     Source Type: Journal    
DOI: 10.1186/1751-0473-3-14     Document Type: Review

References (18)

1. Porwollik S Boyd EF Choy C Cheng P Florea L Proctor E McClelland M Characterization of Salmonella enterica subspecies I genovars by use of microarrays J Bacteriol 2004, 186(17):5883-5898. 516822 15317794 10.1128/ JB.186.17.5883-5898.2004
2. Palaniappan RU Zhang Y Chiu D Torres A Debroy C Whittam TS Chang YF Differentiation of Escherichia coli pathotypes by oligonucleotide spotted array J Clin Microbiol 2006, 44(4):1495-1501. 1448672 16597882 10.1128/JCM.44.4.1495-1501.2006
3. Scaria J Palaniappan R Chiu D Phan JA Ponna L McDonough P Grohn Y Porwollik S McClelland M Chiou C Chu C Chang Y Microarray for molecular typing of Salmonella enterica serovars Mol Cell Probes 2008, 22(4):238-243. 10.1016/j.mcp.2008.04.002 18554865
4. Loy A Bodrossy L Highly parallel microbial diagnostics using oligonucleotide microarrays Clin Chim Acta 2006, 363(1-2);106-119. 10.1016/j.cccn.2005.05.041 16126187
5. Keum KC Yoo SM Lee SY Chang KH Yoo NC Yoo WM Kim JM Choi JY Kim JS Lee G DNA microarray-based detection of nosocomial pathogenic Pseudomonas aeruginosa and Acinetobacter baumannii Mol Cell Probes 2006, 20(1):42-50. 10.1016/j.mcp.2005.09.001 16269235
6. Sergeev N Distler M Vargas M Chizhikov V Herold KE Rasooly A Microarray analysis of Bacillus cereus group virulence factors J Microbiol Methods 2006, 65(3):488-502. 10.1016/j.mimet.2005.09.013 16242802
7. Gao H Yang ZK Gentry TJ Wu L Schadt CW Zhou J Microarray-based analysis of microbial community RNAs by whole-community RNA amplification Appl Environ Microbiol 2007, 73(2):563-571. 1796964 17098911 10.1128/ AEM.01771-06
8. Ma M Wang H Yu Y Zhang D Liu S Detection of antimicrobial resistance genes of pathogenic Salmonella from swine with DNA microarray J Vet Diagn Invest 2007, 19(2):161-167. 17402610
9. Cassone M D'Andrea MM Iannelli F Oggioni MR Rossolini GM Pozzi G DNA microarray for detection of macrolide resistance genes Antimicrob Agents Chemother 2006, 50(6):2038-2041. 1479117 16723563 10.1128/AAC.01574-05
10. Quan PL Palacios G Jabado OJ Conlan S Hirschberg DL Pozo F Jack PJ Cisterna D Renwick N Hui J Drysdale A Amos-Ritchie R Baumeister E Savy V Lager KM Richt JA Boyle DB Garcia-Sastre A Casas I Perez-Brena P Briese T Lipkin WI Detection of respiratory viruses and subtype identification of influenza A viruses by GreeneChipResp oligonucleotide microarray J Clin Microbiol 2007, 45(8):2359-2364. 1951265 17553978 10.1128/ JCM.00737-07
11. Burton JE Oshota OJ Silman NJ Differential identification of Bacillus anthracis from environmental Bacillus species using microarray analysis J Appl Microbiol 2006, 101(4):754-763. 10.1111/j.1365-2672.2006.02991.x 16968287
12. Frye JG Jesse T Long F Rondeau G Porwollik S McClelland M Jackson CR Englen M Fedorka-Cray PJ DNA microarray detection of antimicrobial resistance genes in diverse bacteria Int J Antimicrob Agents 2006, 27(2):138-151. 10.1016/j.ijantimicag.2005.09.021 16427254
13. Antwerpen MH Schellhase M Ehrentreich-Forster E Bier F Witte W Nubel U DNA microarray for detection of antibiotic resistance determinants in Bacillus anthracis and closely related Bacillus cereus Mol Cell Probes 2007, 21(2);152-160. 10.1016/j.mcp.2006.10.002 17118627
14. Argraves GL Jani S Barth JL Argraves WS ArrayQuest: A web resource for the analysis of DNA microarray data BMC Bioinformatics 2005, 6:287. 1325052 16321157 10.1186/1471-2105-6-287
15. Saeed AI Bhagabati NK Braisted JC Liang W Sharov V Howe EA Li J Thiagarajan M White JA Quackenbush J TM4 microarray software suite Methods Enzymol 2006, 411:134-193. 10.1016/S0076-6879(06)11009-5 16939790
16. Zhao H Engelen K De Moor B Marchal K CALIB: A Bioconductor package for estimating absolute expression levels from two-color microarray data Bioinformatics 2007, 23(13):1700-1701. 10.1093/bioinformatics/btm159 17485432
17. Tarraga J Medina I Carbonell J Huerta-Cepas J Minguez P Alloza E Al-Shahrour F Vegas-Azcarate S Goetz S Escobar P Garcia-Garcia F Conesa A Montaner D Dopazo J GEPAS, a web-based tool for microarray data analysis and interpretation Nucleic Acids Res 2008, 36(Web Server):W308-14. 2447723 18508806 10.1093/nar/gkn303
18. Xia X McClelland M Wang Y WebArray: An online platform for microarray data analysis BMC Bioinformatics 2005, 6:306. 1327694 16371165 10.1186/ 1471-2105-6-306