ArrayQuest: A web resource for the analysis of DNA microarray data

BMC Bioinformatics

Volumn 6, Issue , 2005, Pages

  Argraves, Gary L ^a   Jani, Saurin ^b   Barth, Jeremy L ^b   Argraves, W Scott ^a,b  

^a Array Genetics Inc   (United States)

^b MEDICAL UNIVERSITY OF SOUTH CAROLINA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANALYSIS ALGORITHMS; DNA MICRO-ARRAY; DNA MICROARRAY ANALYSIS; DNA MICROARRAY DATA; METHODS LIBRARIES; MICROARRAY ANALYSIS; OPEN SOURCE SOFTWARE DEVELOPMENT; UNIVERSITY OF SOUTH CAROLINA;

COMPUTER OPERATING SYSTEMS; CONSERVATION; DIGITAL LIBRARIES; GENE EXPRESSION; SOFTWARE DESIGN;

WORLD WIDE WEB;

ALGORITHM; ARTICLE; COMPUTER PROGRAM; COMPUTER SYSTEM; DATA ANALYSIS; DATA BASE; DNA MICROARRAY; GENOMICS; INFORMATION RETRIEVAL; INFORMATION SYSTEM; INTERNET; PROTEOMICS; BIOLOGY; CHEMISTRY; CLUSTER ANALYSIS; COMPUTER GRAPHICS; COMPUTER INTERFACE; COMPUTER LANGUAGE; FACTUAL DATABASE; GENE EXPRESSION PROFILING; GENE LIBRARY; GENETIC DATABASE; NUCLEIC ACID DATABASE; PROCEDURES; PROTEIN DATABASE; STATISTICAL ANALYSIS;

DNA;

ALGORITHMS; CLUSTER ANALYSIS; COMPUTATIONAL BIOLOGY; COMPUTER GRAPHICS; DATA INTERPRETATION, STATISTICAL; DATABASE MANAGEMENT SYSTEMS; DATABASES, FACTUAL; DATABASES, GENETIC; DATABASES, NUCLEIC ACID; DATABASES, PROTEIN; DNA; GENE EXPRESSION PROFILING; GENE LIBRARY; INFORMATION STORAGE AND RETRIEVAL; INTERNET; OLIGONUCLEOTIDE ARRAY SEQUENCE ANALYSIS; PROGRAMMING LANGUAGES; SOFTWARE; USER-COMPUTER INTERFACE;

EID: 29144448060     PISSN: 14712105     EISSN: 14712105     Source Type: Journal    
DOI: 10.1186/1471-2105-6-287     Document Type: Article

References (14)

1. Dudoit S, Gentleman RC, Quackenbush J: Open source software for the analysis of microarray data. Biotechniques 2003, Suppl:45-51.
2. Bioconductor open source software for bioinformatics http://www.bioconductor.org/]
3. Bioperl Project [http://www.bioperl.org/]
4. Vaquerizas JM, Dopazo J, Diaz-Uriarte R: DNMAD: web-based diagnosis and normalization for microarray data. Bioinformatics 2004, 20(18):3656-3658.
5. Hokamp K, Roche FM, Acab M, Rousseau ME, Kuo B, Goode D, Aeschliman D, Bryan J, Babiuk LA, Hancock RE et al. ArrayPipe: a flexible processing pipeline for microarray data. Nucleic Acids Res 2004, 32(Web Server issue):W457-459.
6. Cheung KH, Hager J, Pan D, Srivastava R, Mane S, Li Y, Miller P, Williams KR: KARMA: a web server application for comparing and annotating heterogeneous microarray platforms. Nucleic Acids Res 2004, 32(Web Server issue):W441-444.
7. Herrero J, Al-Shahrour F, Diaz-Uriarte R, Mateos A, Vaquerizas JM, Santoyo J, Dopazo J: GEPAS: A web-based resource for microarray gene expression data analysis. Nucleic Acids Res 2003, 31(13):3461-3467.
8. Psarros M, Heber S, Sick M, Thoppae G, Harshman K, Sick B: RACE: Remote Analysis Computation for gene Expression data. Nucleic Acids Res 2005, 33(Web Server issue):W638-643.
9. Comander J, Weber GM, Gimbrone MA, Jr., Garcia-Cardena G: Argus - a new database system for Web-based analysis of multiple microarray data sets. Genome Res 2001, 11(9):1603-1610.
10. Kapushesky M, Kemmeren P, Culhane AC, Durinck S, Ihmels J, Korner C, Kull M, Torrente A, Sarkans U, Vilo J et al. Expression Profiler: next generation - an online platform for analysis of microarray data. Nucleic Acids Res 2004, 32(Web Server issue):W465-470.
11. ArrayQuest [http://proteogenomics.musc.edu/arrayquest.html]
12. Argraves GL, Barth JL, Argraves WS: The MUSC DNA Microarray Database. Bioinformatics 2003, 19(18):2473-2474.
13. The R Project for Statistical Computing [http://www.r-project.org/]
14. Gentleman RC, Carey VJ, Bates DM, Bolstad B, Dettling M, Dudoit S, Ellis B, Gautier L, Ge Y, Gentry J et al: Bioconductor: open software development for computational biology and bioinformatics. Genome Biol 2004, 5(10):R80.