Two divergent genes encoding L-myo-inositol 1-phosphate synthase1 (CaMIPS1) and 2 (CaMIPS2) are differentially expressed in chickpea

Plant, Cell and Environment

Volumn 31, Issue 11, 2008, Pages 1701-1716

  Kaur, Harmeet ^a   Shukla, Rakesh Kumar ^a   Yadav, Gitanjali ^a   Chattopadhyay, Debasis ^a   Majee, Manoj ^a  

^a NATIONAL INSTITUTE OF PLANT GENOME RESEARCH   (India)

Author keywords

Differential expression; Environmental stress; Functional complementation; Gene duplication

Indexed keywords

INOSITOL; MYOINOSITOL 1 PHOSPHATE SYNTHASE; PLANT RNA; SODIUM CHLORIDE;

CARBOHYDRATE; COMPARATIVE STUDY; ENVIRONMENTAL STRESS; ENZYME ACTIVITY; GENE EXPRESSION; GENETIC VARIATION; GROWTH RESPONSE; LEGUME; PHYSIOLOGICAL RESPONSE; TEMPERATURE EFFECT;

AMINO ACID SEQUENCE; ARTICLE; BIOLOGY; CHICKPEA; DRUG EFFECT; GENE; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION; GENETIC COMPLEMENTATION; GENETICS; ISOLATION AND PURIFICATION; METABOLISM; MOLECULAR CLONING; MOLECULAR GENETICS; NUCLEOTIDE SEQUENCE; PROMOTER REGION; PROTEIN TERTIARY STRUCTURE; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; SCHIZOSACCHAROMYCES; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY; TEMPERATURE;

AMINO ACID SEQUENCE; BASE SEQUENCE; CICER; CLONING, MOLECULAR; COMPUTATIONAL BIOLOGY; GENE EXPRESSION PROFILING; GENE EXPRESSION REGULATION, PLANT; GENES, PLANT; GENETIC COMPLEMENTATION TEST; INOSITOL; MOLECULAR SEQUENCE DATA; MYO-INOSITOL-1-PHOSPHATE SYNTHASE; PROMOTER REGIONS (GENETICS); PROTEIN STRUCTURE, TERTIARY; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RNA, PLANT; SCHIZOSACCHAROMYCES; SEQUENCE ALIGNMENT; SEQUENCE HOMOLOGY, AMINO ACID; SODIUM CHLORIDE; TEMPERATURE;

CICER ARIETINUM; SCHIZOSACCHAROMYCES POMBE;

EID: 53349127838     PISSN: 01407791     EISSN: 13653040     Source Type: Journal    
DOI: 10.1111/j.1365-3040.2008.01877.x     Document Type: Article

References (69)

1. Abe H., Urao T., Ito T., Seki M., Shinozaki K. Yamaguchi-Shinozaki K. (2003) Arabidopsis atmyc2 (bHLH) and atmyb2 (MYB) function as transcriptional activators in Abscisic acid signaling. The Plant Cell 15, 63 78.
2. Abreu E.F.M. Aragao F.J.L. (2007) Isolation and characterization of a myo-inositol phosphate synthase gene from yellow passion fruit (Passiflora edulis f. flavicarpa) expressed during seed development and environmental stress. Annals of Botany 99, 285 292.
3. Abu-Abied M. Holland D. (1994) The gene c-ino1 from Citrus paradisi is highly homologous to tur1 and ino1 from yeast and Spirodela encoding for myo-inositol phosphate synthase. Plant Physiology 106, 1689.
4. Adhikari J., Majumder A.L., Bhaduri T.J., Dasgupta S. Majumder A.L. (1987) Chloroplasts as a locale of L-myo-inositol 1-phosphate synthase. Plant Physiology 85, 611 614.
5. Alfa C., Fantes P., Hyams J., McLeod M. Warbrick E. (1992) Experiments with Fission Yeast: A Laboratory Manual. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA.
6. Barnett J.E.G., Brice R.E. Corina D.L. (1970) A colorimetric determination of inositol monophosphatase as an assay for D-glucose 6-phosphate 1-L myo-inositol 1-phosphate cyclase. Biochemical Journal 119, 183 186.
7. Boominathan P., Shukla R., Kumar A., Manna D., Negi D., Verma P.K. Chattopadhyay D. (2004) Long-term transcript accumulation during the development of dehydration adaptation in Cicer arietinum. Plant Physiology 135, 1608 1620.
8. Bradford M.W. (1976) Quantitation of microgram quantities of protein utilizing the principle of protein dye binding. Analytical Biochemistry 72, 248 254.
9. Callis J., Fromm M. Walbot V. (1987) Intron increases gene expression in cultured maize cells. Genes & Development 1, 1183 1200.
10. Chatterjee A., Dastidar K.G., Maitra S., Chatterjee A.D., Dihazi H., Eschrich K. Majumder A.L. (2006) sll1981, an acetolactate synthase homologue of Synechocystis sp. PCC6803, functions as L-myo-inositol 1-phosphate synthase. Planta 224, 367 379.
11. Chaudhuri B., Ingavale S. Bachhawat A.K. (1997) apd1+, a gene required for red pigment formation in ade6, mutants of Schizosaccharomyces pombe, encodes an enzyme required for glutathione biosynthesis: a role for glutathione and a glutathione conjugate pump. Genetics 145, 75 83.
12. Chen R.S., Toribara T.Y. Warner H. (1956) Microdetermination of phosphorus. Analytical Chemistry 28, 1756 1758.
13. Chun J.A., Jin U.H., Lee J.W., et al. (2003) Isolation and characterization of a myo-inositol 1-phosphate synthase cDNA from developing sesame (Sesamum indicum L.) seeds: functional and differential expression, and salt induced transcription during germination. Planta 216, 874 880.
14. Das Chatterjee A., Goswami L., Maitra S., Dastidar K.G., Ray S. Majumder A.L. (2006) Introgression of a novel salt tolerant L- myo-inositol 1 phosphate synthase from Porteresia coarctata (Roxb.) Tateoka (PcINO1) confers salt tolerance to evolutionary diverse organisms. FEBS Letters 580, 3980 3988.
15. Dastidar K.G., Maitra S., Goswami L., Roy D., Das K.P. Majumder A.L. (2006) An insight into the molecular basis of salt-tolerance of L-myo-inositol 1-phosphate synthase (PcINO1) from Porteresia coarctata (Roxb.) Tateoka, a halophytic wild rice. Plant Physiology 140, 1279 1296.
16. DeLano W.L. (2002) The PyMol Molecular Graphics System. DeLano Scientific, San Carlos, CA, USA.
17. Donahue T.F. Henry S.A. (1981) Myo-inositol 1-phosphate synthase. Characteristics of the enzyme and identification of its structural gene in yeast. Journal of Biological Chemistry 256, 7077 7085.
18. Downes C.P., Gray A. Lucocq J.M. (2005) Probing phosphoinositide functions in signaling and membrane trafficking. Trends in Cell Biology 15, 259 268.
19. Gasser S.M., Amati B.B., Cardenas M.E. Hofman J.F.X. (1989) Studies on scaffold attachment sites and their relation to genome function. International Review of Cytology 119, 57 96.
20. Gilmartin P.M., Sarokin L., Memelink J. Chua N.H. (1990) Molecular light switches for plant genes. The Plant Cell 2, 369 378.
21. Grace M.L., Chandrasekharan M.B., Hall T.C. Crowe A.J. (2004) Sequence and spacing of TATA box elements are critical for accurate initiation from the beta-phaseolin promoter. Journal of Biological Chemistry 279, 8102 8110.
22. Grierson C., Du J.S., Zabala M.T., Beggs K., Smith C., Holdsworth M. Bevan M. (1994) Separate cis sequences and trans factor direct metabolic and developmental regulation of a potato tuber storage protein gene. The Plant Journal 5, 815 826.
23. Gross W. Boss W.F. (1993) Inositol phospholipids and signal transduction. In Control of Plant Gene Expression (ed. D.P.S. Verma pp. 17 32. CRC Press, Boca Raton, FL, USA.
24. Hait N.C., RayChaudhuri A., Das A., Bhattacharyya S. Majumder A.L. (2002) Processing and activation of chloroplast L-myo-inositol 1 phosphate synthase from Oryza sativa requires signals from both light and salt. Plant Science 162, 559 568.
25. Hegeman C.E., Good L.L. Grabau E.A. (2001) Expression of D-myo-inositol-3-phosphate synthase in soybean. Implications for phytic acid biosynthesis. Plant Physiology 125, 1941 1948.
26. Higo K., Ugawa Y., Iwamoto M. Korenaga T. (1999) Plant cis acting regulatory DNA elements (PLACE) database. Nucleic Acids Research 27, 297 300.
27. Hubbard S.J. Thornton J.M. (1993) NACCES. Computer Program. Department of Biochemistry and Molecular Biology, University College, London, UK.
28. Humphery W., Dalke A. Schulten K. (1996) VMD-Visual Molecular Dynamics. Journal of Molecular Graphics 14, 33 38.
29. Ingavale S.S. Bachhawat A.K. (1999) Restoration of inositol prototrophy in the fission yeast Schizosaccharomyces pombe. Microbiology 145, 1903 1910.
30. Ishitani M., Majumder A.L., Bornhouser A., Michalowski C.B., Jensen R.G. Bohnert H.J. (1996) Coordinate transcriptional induction of myo-inositol metabolism during environmental stress. The Plant Journal 9, 537 548.
31. Jin X. Geiger J.H. (2003) Structure of NAD and NADH bound 1-L myo inositol 1-phosphate synthase. Acta Crystallographica D 59, 1154 1164.
32. Johnson M.D. (1994) The Arabidopsis thaliana myo-inositol 1-phosphate synthase (EC 5.5.1.4). Plant Physiology 105, 1023 1024.
33. Johnson M.D. Sussex I.M. (1995) 1-L-myo-inositol 1-phosphate synthase from Arabidopsis thaliana. Plant Physiology 107, 613 619.
34. Kamiya N., Nagasaki H., Morikami A., Sato Y. Matsuoka M. (2003) Isolation and characterization of a rice WUSCHEL-type homeobox gene that is specifically expressed in the central cells of a quiscent center in the root apical meristem. The Plant Journal 35, 429 441.
35. Kim S.Y., Chung H.J. Thomas T.L. (1997) Isolation of a novel class of bZIP transcription factors that interact with ABA responsive and embryo specification elements in Dc3 promoter using a modified yeast one hybrid system. The Plant Journal 11, 1237 1251.
36. Laemmli U.K. (1970) Cleavage of structural proteins during the assembly of the head of bacteriophage T4. Nature 227, 680 685.
37. Larson S.R. Raboy V. (1999) Linkage mapping of maize and barley myo-inositol 1-phosphate synthase DNA sequences: correspondence with a low phytic acid mutation. Theoretical and Applied Genetics 99, 27 36.
38. Lescot M., Dehais P., Thijs G., Marchal K., Moreau Y., Van der Peer Y.R. Rombauts S. (2002) PlantCARE, a database of plant cis acting regulatory elements and aportal of tools for insilico analysis of promoter sequences. Nucleic Acids Research 30, 325 327.
39. Loewus F.A. (1990) Inositol biosynthesis. In Inositol Metabolism in Plants (eds D.J. Morre, W.F. Boss F.A. Loewus pp. 13 19. Wiley-Liss, New York, NY, USA.
40. Loewus F.A. Loewus M.W. (1983) Myo-inositol: its biosynthesis and metabolism. Annual Review of Plant Physiology 34, 137 161.
41. Loewus F.A. Murthy P.N. (2000) Myo-inositol metabolism in plants. Plant Science 150, 1 19.
42. Majee M., Maitra S., Dastidar K.G., Pattnaik S., Chatterjee A., Hait N.C., Das K.P. Majumder A.L. (2004) A novel salt tolerant L myo-inositol-1- phosphate synthase from Porteresia coarctata (Roxb) Tateoka, a halophytic wild rice. Journal of Biological Chemistry 279, 28539 28552.
43. Majee M., Patra B., Mundree S. Majumder A.L. (2005) Molecular cloning, bacterial expression and characterization of L myo-inositol 1 phosphate synthase from a monocotyledonous resurrection plant Xerophyta Viscosa Baker. Journal of Plant Biochemistry and Biotechnology 14, 95 99.
44. Majumder A.L., Duttagupta S., Goldwasser P., Donahue T.F. Henry S.A. (1981) The mechanism of interallelic complementation at the INO-1 locus in yeast: immunological analysis of mutants. Molecular and General Genetics 184, 347 354.
45. Majumder A.L., Johnson M.D. Henry S.A. (1997) 1L-myo-inositol 1 phosphate synthase. Biochemica et Biophysica Acta 1348, 245 256.
46. Majumder A.L., Chatterjee A., Dastidar K.G. Majee M. (2003) Diversification and evolution of L-myo-inositol 1 phosphate synthase. FEBS Letter 533, 3 10.
47. Maundrell K. (1993) Thiamine repressible expression vectors pREP and pRIP for fission yeast. Gene 123, 127 130.
48. Nakashima K., Fujita Y., Katsura K., Maruyama K., Maruyama K., Narusaka Y., Seki M., Shinozaki K. Yamaguchi-Shinozaki K. (2006) Transcriptional regulation of AB13 and ABA responsive genes including RD29B and RD 29A in seeds, germinating embryos, and seedlings of Arabidopsis. Plant Molecular Biology 60, 51 68.
49. Nelson D.E., Rammesmayer G. Bohnert H.J. (1998) Regulation of cell specific inositol metabolism and transport in plant salinity tolerance. The Plant Cell 10, 753 764.
50. Nunes A.C.S., Vianna G.R., Cuneo F., Amaya-Farfa'n J., Capdeville G., Rech E.L. Aragao F.J.L. (2006) RNAi mediated silencing of the myo-inositol-1-phosphate synthase gene (GmMIPS1) in transgenic soybean inhibited seed development and reduced phytate content. Planta 224, 125 132.
51. Paul M.J. Cockburn W. (1989) Pinitol, a compatible solute in Mesembryanthemum crystallinum L. Journal of Experimental Botany 40, 1093 1098.
52. Planchais S., Perennes C., Glab N., Mironov V., Inze D. Bergounioux C. (2002) Characterization of cis-acting element involved in cell cycle phase independent activation of Arath; CycB1;1 transcription and identification of putative regulatory proteins. Plant Molecular Biology 50, 111 127.
53. Raimond J., Rouleaux F., Monsigny M. Legrand A. (1995) The second intron of the human galectin -3 gene has a strong promoter activity down regulated by p53. FEBS Letters 363, 165 169.
54. RayChaudhuri A., Hait N.C., DasGupta S., Bhaduri T.J., Deb R. Majumder A.L. (1997) L myo-inositol 1-phosphate synthase from plant sources (characteristics of the chloroplastic and cytosolic enzymes). Plant Physiology 115, 727 736.
55. Rose A.B., Elfersh T., Parra G. Korf I. (2008) Promoters proximal introns in Arabidopsis thaliana are enriched in dispersed signals that elevate gene expression. The Plant Cell 20, 543 551.
56. Sambrook J. Russell D.W. (2001) Molecular Cloning: a Laboratory Manual, 3rd edn. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY, USA.
57. Sharples S.C. Fry S.C. (2007) Radioisotope ratios discriminate between competing pathways of cell wall polysaccharide and RNA biosynthesis in living plant cells. The Plant Journal 52, 252 262.
58. Shen B., Hohmann S., Jensen R.G. Bohnert H.J. (1999) Roles of sugar alcohols in osmotic stress adaptation. Replacement of glycerol by mannitol and sorbitol in yeast. Plant Physiology 121, 45 52.
59. Sheveleva E., Chmara W., Bohnert H.J. Jensen R.G. (1997) Increased salt and drought tolerance by D-ononitol production in transgenic Nicotiana tabaccum L. Plant Physiology 115, 1211 1219.
60. Shirsat A., Wilford N., Croy R. Boulter D. (1989) Sequences responsible for the tissue specific promoter activity of a pea legumin gene in tobacco. Molecular and General Genetics 215, 326 331.
61. Shukla R.K., Raha S., Tripathi V. Chattopadhyay D. (2006) Expression of CAP2, an APETALA-2 family transcription factor from chickpea, enhances growth and tolerance to dehydration and salt stress in transgenic tobacco. Plant Physiology 142, 113 123.
62. Smart C.C. Fleming A.J. (1993) A plant gene with homology to D-myo-inositol-3 phosphate synthase is rapidly and spatially upregulated during an abscisic acid induced morphogenic response in Spirodela polyrrhiza. The Plant Journal 4, 279 293.
63. Stein A.J. Geiger J.H. (2002) The crystal structure and mechanism of 1 L myo inositol 1 phosphate synthase. Journal of Biological Chemistry 277, 9484 9491.
64. Stevenson J.M., Perera I.Y., Heilmann I., Persson S. Boss W.F. (2000) Inositol signaling and plant growth. Trends in Plant Science 5, 252 258.
65. Syam Prakash S.R. Jayabaskaran C. (2006) Expression and localization of calcium-dependent protein kinase isoforms in chickpea. Journal of Plant Physiology 163, 1135 1149.
66. Taji T., Ohsumi C., Iuchi S., Seki M., Kasuga M., Kobayashi M., Yamaguchi-Shinozaki K. Shinozaki K. (2002) Important roles of drought and cold inducible genes for galactinol synthase in stress tolerance in Arabidopsis thaliana. The Plant Journal 29, 417 426.
67. Thompson J.D., Higgins D.J. Gibson T.J. (1994) CLUSTAL W: improving the sensitivity of progress multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Research 22, 4673 4680.
68. Urao T., Yamaguchi-Shinozaki K., Urao S. Shinozaki K. (1993) An Arabidopsis myb homolog is induced by dehydration stress and its gene product binds to the conserved MYB recognition sequence. The Plant Cell 5, 1529 1539.
69. Yoshida K.T., Wada T., Koyama H., Mizobuchi-Fukuoka R. Naito S. (1999) Temporal and spatial patterns of accumulation of the transcript of myo-inositol-1-phosphate synthase and phytin containing particles during seed development in rice. Plant Physiology 119, 65 72.