An ontology for Xenopus anatomy and development

BMC Developmental Biology

Volumn 8, Issue , 2008, Pages

  Segerdell, Erik ^a   Bowes, Jeff B ^a   Pollet, Nicolas ^b,c   Vize, Peter D ^a  

^a UNIVERSITY OF CALGARY   (Canada)

^b CNRS   (France)

^c UNIVERSITÉ D EVRY VAL D ESSONNE   (France)

Author keywords

[No Author keywords available]

Indexed keywords

ANATOMY; ANIMAL TISSUE; ARTICLE; DEVELOPMENTAL STAGE; EMBRYO; EMBRYO DEVELOPMENT; GENE EXPRESSION; MUTANT; NONHUMAN; ONTOGENY; PHENOTYPE; XENOPUS; ANIMAL; ANIMAL EMBRYO; COMPARATIVE STUDY; GENETIC DATABASE; GENETICS; GROWTH, DEVELOPMENT AND AGING; HISTOLOGY; NOMENCLATURE; PRENATAL DEVELOPMENT; XENOPUS LAEVIS;

ANURA; XENOPUS LAEVIS; XENOPUS TROPICALIS;

ANATOMY; ANIMALS; DATABASES, GENETIC; EMBRYO, NONMAMMALIAN; TERMINOLOGY AS TOPIC; XENOPUS LAEVIS;

EID: 53249127138     PISSN: None     EISSN: 1471213X     Source Type: Journal    
DOI: 10.1186/1471-213X-8-92     Document Type: Article

References (25)

1. PD Nieuwkoop J Faber (Eds), Normal Table of Xenopus laevis (Daudin) New York: Garland Publishing 1994
2. Axeldb: a Xenopus laevis database focusing on gene expression. N Pollet HA Schmidt V Gawantka M Vingron C Niehrs, Nucleic Acids Res 2000 28 139 140 10592204 10.1093/nar/28.1.139
3. NIBB XDB3. http://xenopus.nibb.ac.jp
4. Morpholino oligos: making sense of antisense? J Heasman, Dev Biol 2002 243 209 214 10.1006/dbio.2001.0565 11884031
5. Defining synphenotype groups in Xenopus tropicalis by use of antisense morpholino oligonucleotides. AA Rana C Collart MJ Gilchrist JC Smith, PLoS Genet 2006 2 e193 17112317 10.1371/journal.pgen.0020193
6. The OBO Foundry: coordinated evolution of ontologies to support biomedical data integration. B Smith M Ashburner C Rosse J Bard W Bug W Ceusters LJ Goldberg K Eilbeck A Ireland CJ Mungall Consortium OBI N Leontis P Rocca-Serra A Ruttenberg SA Sansone RH Scheuermann N Shah PL Whetzel S Lewis, Nat Biotechnol 2007 25 1251 1255 10.1038/nbt1346 17989687
7. Xenbase: a Xenopus biology and genomics resource. JB Bowes KA Snyder E Segerdell R Gibb C Jarabek E Noumen N Pollet PD Vize, Nucleic Acids Res 2008 36 D761 D767 17984085 10.1093/nar/gkm826
8. Anatomics: the intersection of anatomy and bioinformatics. JB Bard, J Anat 2005 206 1 16 15679867 10.1111/j.0021-8782.2005.00376.x
9. The Open Biomedical Ontologies. http://obofoundry.org
10. CARO-The Common Anatomy Reference Ontology. MA Haendel F Neuhaus D Osumi-Sutherland PM Mabee JLV Mejino Jr CJ Mungall B Smith, Anatomy Ontologies for Bioinformatics New York: Springer, Burger A, Davidson D, Baldock R, 2007 311 333
11. An anatomical ontology for amphibians. AM Maglia JL Leopold LA Pugener S Gauch, Pac Symp Biocomput 2007 367 378 17992749
12. On carcinomas and other pathological entities. B Smith A Kumar W Ceusters C Rosse, Comp Funct Genom 2005 6 379 387 10.1002/cfg.497
13. ZFIN Zebrafish Anatomy. http://zfin.org/zf_info/anatomy/dict/sum.html
14. Xenbase FTP. ftp://ftp.xenbase.org/pub/XenopusAnatomyOntology/ xenopus_anatomy.obo
15. Ontology Detail: Xenopus anatomy and development. http://obofoundry.org/ cgi-bin/detail.cgi?id=xenopus_anatomy
16. EuReGene Xenopus Gene Expression Database. http://www.euregene.org/ xgebase
17. An ontology for cell types. J Bard SY Rhee M Ashburner, Genome Biol 2005 6 R21 15693950 10.1186/gb-2005-6-2-r21
18. Microarray-based analysis of early development in Xenopus laevis. CR Altmann E Bell A Sczyrba J Pun S Bekiranov T Gaasterland AH Brivanlou, Dev Biol 2001 236 64 75 10.1006/dbio.2001.0298 11456444
19. Phenotype ontologies: the bridge between genomics and evolution. PM Mabee M Ashburner Q Cronk GV Gkoutos M Haendel E Segerdell C Mungall M Westerfield, Trends Ecol Evol 2007 22 345 350 10.1016/j.tree.2007.03.013 17416439
20. Phenote: A Phenotype Annotation Tool using Ontologies. http://phenote.org
21. OBO-Edit Overview. http://oboedit.org
22. SourceForge.net Repository. http://obo.cvs.sourceforge.net/obo/obo/ ontology/anatomy/gross_anatomy/animal_gross_anatomy/frog/xenopus_anatomy.obo
23. EM Deuchar, Xenopus: the South African Clawed Frog London, New York: Wiley 1975
24. Xenopus as a model system for vertebrate heart development. AS Warkman PA Krieg, Semin Cell Dev Biol 2007 18 46 53 17194606 10.1016/j.semcdb.2006.11.010
25. MedlinePlus Medical Dictionary. http://www.nlm.nih.gov/medlineplus/ mplusdictionary.html