-
1
-
-
0036207347
-
Modeling and simulation of genetic regulatory systems: A literature review
-
H. de Jong, "Modeling and simulation of genetic regulatory systems: a literature review," J. Comput Biol., vol. 1, no. 9, pp. 67-103, 2002.
-
(2002)
J. Comput Biol
, vol.1
, Issue.9
, pp. 67-103
-
-
de Jong, H.1
-
2
-
-
45149101194
-
Current approaches to gene regulatory network modelling
-
T. Schlitt and A. Brazma, "Current approaches to gene regulatory network modelling." BMC Bioinformatics, vol. 8, 2007.
-
(2007)
BMC Bioinformatics
, vol.8
-
-
Schlitt, T.1
Brazma, A.2
-
3
-
-
0029267491
-
Dynamical behaviour of biological regulatory networks-i. biological role of feedback loops and practical use of the concept of the loop-characteristic state
-
R. Thomas, D. Thieffry, and M. Kaufman, "Dynamical behaviour of biological regulatory networks-i. biological role of feedback loops and practical use of the concept of the loop-characteristic state." Bull Math Biol., vol. 57, pp. 247-76, 1995.
-
(1995)
Bull Math Biol
, vol.57
, pp. 247-276
-
-
Thomas, R.1
Thieffry, D.2
Kaufman, M.3
-
4
-
-
0032879544
-
Genetic control of flower morphogenesis in arabidopsis thaliana: A logical analysis
-
L. Mendoza, D. Thieffry, and E. Alvarez-Buylla, "Genetic control of flower morphogenesis in arabidopsis thaliana: a logical analysis." Bioinformatics., vol. 15, no. 7-8, pp. 593-606, 1999.
-
(1999)
Bioinformatics
, vol.15
, Issue.7-8
, pp. 593-606
-
-
Mendoza, L.1
Thieffry, D.2
Alvarez-Buylla, E.3
-
5
-
-
0035928464
-
A logical analysis of the drosophila gap-gene system
-
L. Sánchez and D. Thieffry, "A logical analysis of the drosophila gap-gene system," J. Theor. Biol., vol. 211, no. 2, pp. 115-41, 2001.
-
(2001)
J. Theor. Biol
, vol.211
, Issue.2
, pp. 115-141
-
-
Sánchez, L.1
Thieffry, D.2
-
6
-
-
0041381349
-
Segmenting the fly embryo: A logical analysis of the pair-rule cross-regulatory module
-
-, "Segmenting the fly embryo: a logical analysis of the pair-rule cross-regulatory module," J. Theor. Biol., vol. 224. no. 4, pp. 517-37, 2003.
-
(2003)
J. Theor. Biol
, vol.224
, Issue.4
, pp. 517-537
-
-
Sánchez, L.1
Thieffry, D.2
-
7
-
-
61449309306
-
Segmenting the fly embryo: A logical analysis of the segment polarity cross-regulatory module
-
in press
-
L. Sánchez, C. Chaouiya, and D. Thieffry, "Segmenting the fly embryo: a logical analysis of the segment polarity cross-regulatory module." Int. J. Dev. Biol., in press, 2008.
-
(2008)
Int. J. Dev. Biol
-
-
Sánchez, L.1
Chaouiya, C.2
Thieffry, D.3
-
8
-
-
33646345600
-
A network model for the control of the differentiation process in Th cells
-
L. Mendoza, "A network model for the control of the differentiation process in Th cells." Biosystems, vol. 84, no. 2, pp. 101-14, 2006.
-
(2006)
Biosystems
, vol.84
, Issue.2
, pp. 101-114
-
-
Mendoza, L.1
-
9
-
-
33747874092
-
Dynamical analysis of a generic boolean model for the control of the mammalian cell cycle
-
A. Fauré, A. Naldi, C. Chaouiya, and D. Thieffry, "Dynamical analysis of a generic boolean model for the control of the mammalian cell cycle," Bioinformatics, vol. 22, no. 14, pp. 124-31, 2006.
-
(2006)
Bioinformatics
, vol.22
, Issue.14
, pp. 124-131
-
-
Fauré, A.1
Naldi, A.2
Chaouiya, C.3
Thieffry, D.4
-
10
-
-
0024645936
-
Petri nets: Properties, analysis and applications
-
T. Murata, "Petri nets: Properties, analysis and applications." in Proc. of the IEEE, vol. 77, no 4, pp. 541-80, 1989.
-
(1989)
Proc. of the IEEE
, vol.77
, Issue.4
, pp. 541-580
-
-
Murata, T.1
-
11
-
-
34548302044
-
Petri net modelling of biological networks
-
C. Chaouiya, "Petri net modelling of biological networks," Brief In Bioinfo, vol. 8, pp. 210-19, 2007.
-
(2007)
Brief In Bioinfo
, vol.8
, pp. 210-219
-
-
Chaouiya, C.1
-
12
-
-
10944244598
-
Modeling and simulation of molecular biology using petri nets: Modeling goals of various approaches
-
S. Hardy and P. Robillard, "Modeling and simulation of molecular biology using petri nets: modeling goals of various approaches," J of Bioinfo and Comp Biol, vol. 2, no. 4, pp. 619-37, 2004.
-
(2004)
J of Bioinfo and Comp Biol
, vol.2
, Issue.4
, pp. 619-637
-
-
Hardy, S.1
Robillard, P.2
-
13
-
-
27544505428
-
Qualitative analysis of regulatory graphs: A computational tool based on a discrete formal framework
-
C. Chaouiya, E. Remy, B. Mossé, and D. Thieffry, "Qualitative analysis of regulatory graphs: a computational tool based on a discrete formal framework," LNCIS, vol. 294, pp. 119-26, 2003.
-
(2003)
LNCIS
, vol.294
, pp. 119-126
-
-
Chaouiya, C.1
Remy, E.2
Mossé, B.3
Thieffry, D.4
-
14
-
-
38049150712
-
Decision diagrams for the representation of logical models of regulatory networks
-
A. Naldi, D. Thieffry, and C. Chaouiya, "Decision diagrams for the representation of logical models of regulatory networks," LNBI, vol. 4695, 2007, pp. 233-17.
-
(2007)
LNBI
, vol.4695
, pp. 233-317
-
-
Naldi, A.1
Thieffry, D.2
Chaouiya, C.3
-
15
-
-
0000915688
-
On the relation between the logical structure of systems and their ability to generate multiple steady states and sustained oscillations
-
R. Thomas, "On the relation between the logical structure of systems and their ability to generate multiple steady states and sustained oscillations," Ser. Synergetics, vol. 9, pp. 180-93, 1981.
-
(1981)
Ser. Synergetics
, vol.9
, pp. 180-193
-
-
Thomas, R.1
-
16
-
-
34548327206
-
Dynamical roles of biological regulatory circuits
-
D. Thieffry, "Dynamical roles of biological regulatory circuits." Brief Bioinform., vol. 8, no. 4, pp. 220-25, 2007.
-
(2007)
Brief Bioinform
, vol.8
, Issue.4
, pp. 220-225
-
-
Thieffry, D.1
-
17
-
-
33646352954
-
Ginsim: A software suite for the qualitative modelling, simulation and analysis of regulatory networks
-
A. González, A. Naldi, L. Sanchez, D. Thieffry, and C. Chaouiya, "Ginsim: A software suite for the qualitative modelling, simulation and analysis of regulatory networks." Biosystems, vol. 84, no. 2, pp. 91-100, 2006.
-
(2006)
Biosystems
, vol.84
, Issue.2
, pp. 91-100
-
-
González, A.1
Naldi, A.2
Sanchez, L.3
Thieffry, D.4
Chaouiya, C.5
-
18
-
-
0030026495
-
Qualitative analysis of biochemical reaction systems
-
V. Reddy, M. Liebman, and M. Mavrovouniotis, "Qualitative analysis of biochemical reaction systems," Comput Biol Med., vol. 26, no. 1, pp. 9-24, 1996.
-
(1996)
Comput Biol Med
, vol.26
, Issue.1
, pp. 9-24
-
-
Reddy, V.1
Liebman, M.2
Mavrovouniotis, M.3
-
19
-
-
35048889119
-
Qualitative modelling of genetic networks: From logical regulatory graphs to standard petri nets
-
C. Chaouiya, E. Remy, P. Ruet, and D. Thieffry, "Qualitative modelling of genetic networks: From logical regulatory graphs to standard petri nets." LNCS, vol. 3099, pp. 137-56, 2004.
-
(2004)
LNCS
, vol.3099
, pp. 137-156
-
-
Chaouiya, C.1
Remy, E.2
Ruet, P.3
Thieffry, D.4
-
20
-
-
34548350448
-
Qualitative petri net modelling of genetic networks
-
C. Chaouiya, E. Remy, and D. Thieffry, "Qualitative petri net modelling of genetic networks," TCSB, no. 4220, pp. 95-112, 2006.
-
(2006)
TCSB
, Issue.4220
, pp. 95-112
-
-
Chaouiya, C.1
Remy, E.2
Thieffry, D.3
-
21
-
-
35248854880
-
The petri net markup language: Concepts, technology and tools
-
J. Billington, S. Christensen, K. van Hee, E. Kindler, O. Kummer, L. Petrucci, R. Post, C. Stehno, and M. Weber, "The petri net markup language: Concepts, technology and tools." LNCS vol. 2679, pp. 483-505, 2003.
-
(2003)
LNCS
, vol.2679
, pp. 483-505
-
-
Billington, J.1
Christensen, S.2
van Hee, K.3
Kindler, E.4
Kummer, O.5
Petrucci, L.6
Post, R.7
Stehno, C.8
Weber, M.9
-
22
-
-
53149140385
-
Petri net modelling of biological regulatory networks
-
in press
-
C. Chaouiya, E. Remy, and D. Thieffry, "Petri net modelling of biological regulatory networks," J of Discr Alg, in press.
-
J of Discr Alg
-
-
Chaouiya, C.1
Remy, E.2
Thieffry, D.3
-
23
-
-
26444574877
-
Modeling multi-valued genetic regulatory networks using high-level petri nets
-
J. Comet, H. Klaudel, and S. Liauzu, "Modeling multi-valued genetic regulatory networks using high-level petri nets," LNCS vol. 3536, pp. 208-27, 2005.
-
(2005)
LNCS
, vol.3536
, pp. 208-227
-
-
Comet, J.1
Klaudel, H.2
Liauzu, S.3
-
24
-
-
33846017352
-
The nature of systems biology
-
F. Bruggeman and H. Westerhoff, "The nature of systems biology," Trends Microbiol., vol. 15, no. 1, pp. 45-50, 2007.
-
(2007)
Trends Microbiol
, vol.15
, Issue.1
, pp. 45-50
-
-
Bruggeman, F.1
Westerhoff, H.2
-
25
-
-
39749086288
-
Integrative mathematical oncology
-
A. Anderson and V. Quaranta, "Integrative mathematical oncology." Nat Rev Cancer., vol. 8, no. 3, pp. 227-34, 2008.
-
(2008)
Nat Rev Cancer
, vol.8
, Issue.3
, pp. 227-234
-
-
Anderson, A.1
Quaranta, V.2
-
26
-
-
27544501653
-
Qualitative modelling of regulated metabolic pathways: Application to the tryptophan biosynthesis in e.coli
-
E. Simão, E. Remy, D. Thieffry, and C. Chaouiya, "Qualitative modelling of regulated metabolic pathways: application to the tryptophan biosynthesis in e.coli," Bioinformatics, vol. 21, no. 21 Suppl 2, pp. 190-6, 2005.
-
(2005)
Bioinformatics
, vol.21
, Issue.21 SUPPL. 2
, pp. 190-196
-
-
Simão, E.1
Remy, E.2
Thieffry, D.3
Chaouiya, C.4
-
27
-
-
33751349968
-
Dynamical analysis of the regulatory network defining the dorsal-ventral boundary of the drosophila wing imaginal disk
-
A. González, C. Chaouiya, and D. Thieffry, "Dynamical analysis of the regulatory network defining the dorsal-ventral boundary of the drosophila wing imaginal disk." Genetics, vol. 174, pp. 1625-34, 2006.
-
(2006)
Genetics
, vol.174
, pp. 1625-1634
-
-
González, A.1
Chaouiya, C.2
Thieffry, D.3
-
28
-
-
24744457753
-
A description of dynamical graphs associated to elementary regulatory circuits
-
E. Remy, B. Mossé, C. Chaouiya, and D. Thieffry, "A description of dynamical graphs associated to elementary regulatory circuits," Bioinformatics, vol. 19, no. 2, pp. ii172-ii178, 2003.
-
(2003)
Bioinformatics
, vol.19
, Issue.2
-
-
Remy, E.1
Mossé, B.2
Chaouiya, C.3
Thieffry, D.4
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