Consensus RT-nested PCR detection of yellow head complex genotypes in penaeid shrimp

Journal of Virological Methods

Volumn 153, Issue 2, 2008, Pages 168-175

  Wijegoonawardane, Priyanjalie K M ^a   Cowley, Jeff A ^a   Walker, Peter J ^a  

^a CSIRO   (Australia)

Author keywords

Consensus RT PCR; Genotypes; Genotypic variation; Gill associated virus (GAV); Penaeus monodon; Yellow head virus (YHV)

Indexed keywords

AMPLICON; ARTICLE; CONTROLLED STUDY; GENE SEQUENCE; GENOTYPE; NONHUMAN; PHYLOGENY; PRIORITY JOURNAL; REVERSE TRANSCRIPTION POLYMERASE CHAIN REACTION; RNA DEGRADATION; RNA VIRUS; SENSITIVITY AND SPECIFICITY; SHRIMP; VIRUS INFECTION; VIRUS STRAIN; YELLOW HEAD VIRUS;

ANIMALS; DNA PRIMERS; GENETIC VARIATION; GENOTYPE; PENAEIDAE; REVERSE TRANSCRIPTASE POLYMERASE CHAIN REACTION; RONIVIRIDAE; SENSITIVITY AND SPECIFICITY;

DECAPODA (CRUSTACEA); GILL-ASSOCIATED VIRUS; PENAEIDAE; PENAEUS MONODON; YELLOW HEAD VIRUS;

EID: 53049102885     PISSN: 01660934     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jviromet.2008.07.009     Document Type: Article

References (39)

1. Boonyaratpalin S., Supamattaya K., Kasornchandra J., Direkbusaracom S., Aekpanithanpong U., and Chantanachookin C. Non-occluded baculo-like virus, the causative agent of yellow head disease in the black tiger shrimp (Penaeus monodon). Fish Pathol. 28 (1993) 103-109
2. Chantanachookin C., Boonyaratpalin S., Kasornchandra J., Sataporn D., Ekpanithanpong U., Supamataya K., Sriurairatana S., and Flegel T.W. Histology and ultrastructure reveal a new granulomas-like virus in Penaeus monodon affected by yellow-head disease. Dis. Aquat. Org. 17 (1993) 145-157
3. Cowley J.A., Hall M.R., Cadogan L.C., Spann K.M., and Walker P.J. Vertical transmission of gill-associated virus (GAV) in the black tiger prawn Penaeus monodon. Dis. Aquat. Org. 50 (2002) 95-104
4. Cowley J.A., Cadogan L.C., Wongteerasupaya C., Hodgson R.A.J., Boonsaeng V., and Walker P.J. Multiplex RT-nested PCR differentiation of gill-associated virus (Australia) from yellow head virus (Thailand) of Penaeus monodon. J. Virol. Methods 117 (2004) 49-59
5. Cowley J.A., Dimmock C.M., Spann K.M., and Walker P.J. Detection of Australian gill-associated virus (GAV) and lymphoid organ virus (LOV) of Penaeus monodon by RT-nested PCR. Dis. Aquat. Org. 39 (2000) 159-167
6. Cowley J.A., Dimmock C.M., Wongteerasupaya C., Boonsaeng V., Panyim S., and Walker P.J. Yellow head virus from Thailand and gill-associated virus from Australia are closely related but distinct viruses. Dis. Aquat. Org. 36 (1999) 153-175
7. de la Vega E., Degnan B.M., Hall M.R., Cowley J.A., and Wilson K.J. Quantitative real-time RT-PCR demonstrates that handling stress can lead to rapid increases of gill-associated virus (GAV) infection levels in Penaeus monodon. Dis. Aquat. Org. 59 (2004) 195-203
8. Dhar A.K., Roux M.M., and Klimpel K.R. Detection and quantification of infectious hypodermal and hematopoietic necrosis virus and white spot virus in shrimp using real-time quantitative PCR and SYBR Green chemistry. J. Clin. Microbiol. 39 (2001) 2835-2845
9. Dhar A.K., Roux M.M., and Klimpel K.R. Quantitative assay for measuring the Taura syndrome virus and yellow head virus load in shrimp by real-time RT-PCR using SYBR Green chemistry. J. Virol. Methods 104 (2002) 69-82
10. Flegel T.W., Sriurairatana S., Wongteerasupaya C., Boonsaeng V., Panyim S., and Withyachumnarnkul B. Progress in characterization and control of yellow-head virus of Penaeus monodon. In: Flegel T.W., Menasveta P., and Paisarnrat S. (Eds). Shrimp Biotechnology in Thailand (1997), National Center for Genetic Engineering and Biotechnology, Bangkok 71-78
11. Gravitt P.E., Peyton C.L., Alessi T.Q., Wheeler C.M., Coutlee F., Hildesheim A., Schiffman M.H., Scott D.R., and Apple R.J. Improved amplification of genital human papillomaviruses. J. Clin. Microbiol. 38 (2000) 357-361
12. Hasson K.W., Lightner D.V., Mohney L.L., Redman R.M., Poulos B.T., and White B.M. Taura syndrome virus (TSV) lesion development and the disease cycle in Pacific while shrimp Penaeus vannamei. Dis. Aquat. Org. 36 (1999) 81-93
13. Intorasoot S., Tanaka H., Shoyama Y., and Leelamanit W. Characterization and diagnostic use of a recombinant single-chain antibody specific for the gp116 envelope glycoprotein of yellow head virus. J. Virol. Methods 143 (2007) 186-193
14. Limsuwan C. Handbook for Cultivation of Black Tiger Prawns (1991), Tamsetakit Co., Ltd., Bangkok (in Thai)
15. Kwok S., Kellogg D.E., McKinney N., Spasic D., Goda L., Levenson C., and Sninsky J.J. Effects of primer-template mismatches on the polymerase chain reaction: Human immunodeficiency virus type 1 model studies. Nucl. Acids Res. 18 (1990) 999-1005
16. Mouillesseaux K.P., Klimpel K.R., and Dhar A.K. Improvement in the specificity and sensitivity of detection for the Taura syndrome virus and yellow head virus of penaeid shrimp by increasing the amplicon size in SYBR Green real-time RT-PCR. J. Virol. Methods 111 (2003) 121-127
17. Munro J., and Owens L. Sensitivity and specificity of current diagnostic tests for gill-associated virus in Penaeus monodon. J. Fish Dis. 29 (2006) 649-655
18. Nadala E.C.B., and Loh P.C. Dot-blot nitrocellulose enzyme immunoassays for the detection of white-spot virus and yellow-head virus of penaeid shrimp. J. Virol. Methods 84 (2000) 175-179
19. Nadala E.C.B., Tapay L.M., Cao S., and Loh P.C. Detection of yellowhead virus and Chinese baculovirus in penaeid shrimp by the western blot technique. J. Virol. Methods 69 (2000) 39-44
20. OIE. Yellowhead disease. Manual of Diagnostic Tests for Aquatic Animals. 5th ed. (2006), World Organization for Animal Health, Paris 392-404
21. Pantoja C.R., and Lightner D.V. Similarity between the histopathology of white spot syndrome virus and yellow head syndrome virus and its relevance to diagnosis of YHV disease in the Americas. Aquaculture 218 (2003) 47-54
22. Phan, T.T.N., 2001. Prevalence and co-prevalence of white spot syndrome virus (WSSV) and yellow head complex viruses (YHV-complex) in cultured giant tiger prawn (Penaeus monodon) in Vietnam. MSc Thesis, University of Queensland.
23. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol. Biol. Evol. 4 (1987) 406-425
24. Sithigorngul P., Chauychuwong P., Sithigorngul W., Longyant S., Chaivisuthangkura P., and Menasveta P. Development of a monoclonal antibody specific to yellow head virus (YHV) from Penaeus monodon. Dis. Aquat. Org. 42 (2000) 27-34
25. Sithigorngul P., Rukpratanporn S., Longyant S., Chaivisuthangkura P., Sithigorngul W., and Menasveta P. Monoclonal antibodies specific to yellow-head virus (YHV) of Penaeus monodon. Dis. Aquat. Org. 49 (2002) 71-76
26. Sithigorngul W., Rukpratanporn S., Sittidilokratna N., Pecharaburanin N., Longyant S., Chaivisuthangkura P., and Sithigorngul P. A convenient immunochromatographic test strip for rapid diagnosis of yellow head virus infection in shrimp. J. Virol. Methods 140 (2007) 193-199
27. Sittidilokratna N., Hodgson R.A.J., Cowley J.A., Jitrapakdee S., Boonsaeng V., Panyim S., and Walker P.J. Complete ORF1b-gene sequence indicates yellow head virus is an invertebrate nidovirus. Dis. Aquat. Org. 50 (2002) 87-93
28. Sittidilokratna N., Dangtip S., Cowley J.A., and Walker P.J. RNA transcription analysis and completion of the genome sequence of yellow head nidovirus. Virus Res. 136 (2008) 157-165
29. Sommer R., and Tautz D. Minimal homology requirements for PCR primers. Nucl. Acids Res. 17 (1989) 6749
30. Soowannayan C., Flegel T.W., Sithigorngul P., Slater J., Hyatt A., Cramerri S., Wise T., Crane M.J., Cowley J.A., McCulloch R.J., and Walker P.J. Detection and differentiation of yellow head complex viruses using monoclonal antibodies. Dis. Aquat. Org. 57 (2003) 193-200
31. Spann K.M., Vickers J.E., and Lester R.J.G. Lymphoid organ virus of Penaeus monodon from Australia. Dis. Aquat. Org. 23 (1995) 127-134
32. Spann K.M., Cowley J.A., Walker P.J., and Lester R.J.G. A yellow-head-like virus from Penaeus monodon cultured in Australia. Dis. Aquat. Org. 31 (1997) 169-179
33. Spann K.M., McCulloch R.J., Cowley J.A., East I.J., and Walker P.J. Detection of gill-associated virus (GAV) by in situ hybridization during acute and chronic infections of Penaeus monodon and P. esculentus shrimp. Dis. Aquat. Org. 56 (2003) 1-10
34. Tang K.F.J., and Lightner D.V. A yellow head virus gene probe: nucleotide sequence and application to in situ hybridization. Dis. Aquat. Org. 35 (1999) 165-173
35. Tang K.F.J., Spann K.M., Owens L., and Lightner D.V. In situ detection of Australian gill-associated virus with a yellow head virus gene probe. Aquaculture 205 (2002) 1-5
36. Walker P.J., Cowley J.A., Spann K.M., Hodgson R.A.J., Hall M.R., and Withyachumnarnkul B. Yellow head complex viruses: transmission cycles and topographical distribution in the Asia-Pacific region. In: Browdy C.L., and Jory D.E. (Eds). The New Wave: Proceedings of the Special Session on Sustainable Shrimp Farming (2001), The World Aquaculture Society, Baton Rouge, Louisiana 227-237
37. Walker P.J., Bonami J.R., Boonsaeng V., Chang P.S., Cowley J.A., Enjuanes L., Flegel T.W., Lightner D.V., Loh P.C., Snijder E.J., and Tang K. Family Roniviridae. In: Fauquet C.M., Mayo M.A., Maniloff J., Desselberger U., and Ball L.A. (Eds). Virus Taxonomy, Eighth Report of the International Committee on Taxonomy of Viruses (2005), Elsevier, Academic Press, Amsterdam 975-979
38. Wijegoonawardane, P.K.M., Cowley, J.A., Phan, T.T.N., Hodgson R.A.J., Nielsen L., Kiatpathomchai, W., Walker, P.J., in press. Genetic diversity in the yellow head nidovirus complex. Virology.
39. Wongteerasupaya C., Tongcheua W., Boonsaeng V., Panyim S., Tassanakajon A., Withyachumnarnkul B., and Flegel T.W. Detection of yellow-head virus of Penaeus monodon by RT-PCR amplification. Dis. Aquat. Org. 31 (1997) 181-186