메뉴 건너뛰기




Volumn 4, Issue 9, 2008, Pages

Natural selection fails to optimize mutation rates for long-term adaptation on rugged fitness landscapes

Author keywords

[No Author keywords available]

Indexed keywords

CONDITION; EXPERIMENTAL PARAMETERS; FITNESS LANDSCAPE; HIGH RATE; MUTATION RATES; NATURAL SELECTION; NEAR-OPTIMAL; OPTIMAL MUTATION; PARAMETER-SETTING; RATE OPTIMIZATIONS;

EID: 52949144577     PISSN: 1553734X     EISSN: 15537358     Source Type: Journal    
DOI: 10.1371/journal.pcbi.1000187     Document Type: Article
Times cited : (108)

References (49)
  • 1
    • 0034912314 scopus 로고    scopus 로고
    • Microsatellites in the eukaryotic DNA mismatch repair genes as modulators of evolutionary mutation rate
    • Chang DK, Metzgar D, Wills C, Boland CR (2001) Microsatellites in the eukaryotic DNA mismatch repair genes as modulators of evolutionary mutation rate. Genome Res 11: 1145-1146.
    • (2001) Genome Res , vol.11 , pp. 1145-1146
    • Chang, D.K.1    Metzgar, D.2    Wills, C.3    Boland, C.R.4
  • 3
    • 0029843192 scopus 로고    scopus 로고
    • Spontaneous mutators in bacteria: Insights into pathways of mutagenesis and repair
    • Miller JH (1996) Spontaneous mutators in bacteria: insights into pathways of mutagenesis and repair. Annu Rev Microbiol 50: 625-643.
    • (1996) Annu Rev Microbiol , vol.50 , pp. 625-643
    • Miller, J.H.1
  • 4
    • 0031894341 scopus 로고    scopus 로고
    • Antimutator mutants in bacteriophage T4 and Escherichia coli
    • Schaaper RM (1998) Antimutator mutants in bacteriophage T4 and Escherichia coli. Genetics 148: 1579-1585.
    • (1998) Genetics , vol.148 , pp. 1579-1585
    • Schaaper, R.M.1
  • 5
    • 0242442569 scopus 로고    scopus 로고
    • DNA mismatch repair: Molecular mechanisms and biological function
    • Schofield MJ, Hsieh P (2003) DNA mismatch repair: molecular mechanisms and biological function. Annu Rev Microbiol 57: 579-608.
    • (2003) Annu Rev Microbiol , vol.57 , pp. 579-608
    • Schofield, M.J.1    Hsieh, P.2
  • 7
    • 0036741701 scopus 로고    scopus 로고
    • The effect of deleterious alleles on adaptation in asexual populations
    • Johnson T, Barton NH (2002) The effect of deleterious alleles on adaptation in asexual populations. Genetics 162: 395-411.
    • (2002) Genetics , vol.162 , pp. 395-411
    • Johnson, T.1    Barton, N.H.2
  • 8
    • 0342657165 scopus 로고    scopus 로고
    • The rate of adaptation in asexuals
    • Orr HA (2000) The rate of adaptation in asexuals. Genetics 155: 961-968.
    • (2000) Genetics , vol.155 , pp. 961-968
    • Orr, H.A.1
  • 9
    • 0034542564 scopus 로고    scopus 로고
    • The evolution of mutation rates: Separating causes from consequences
    • Sniegowski PD, Gerrish PJ, Johnson T, Shaver A (2000) The evolution of mutation rates: separating causes from consequences. Bioessays 22: 1057-1066.
    • (2000) Bioessays , vol.22 , pp. 1057-1066
    • Sniegowski, P.D.1    Gerrish, P.J.2    Johnson, T.3    Shaver, A.4
  • 10
    • 33644759282 scopus 로고    scopus 로고
    • The evolution of mutation rate in finite asexual populations
    • André JB, Godelle B (2006) The evolution of mutation rate in finite asexual populations. Genetics 172: 611-626.
    • (2006) Genetics , vol.172 , pp. 611-626
    • André, J.B.1    Godelle, B.2
  • 11
    • 0033534015 scopus 로고    scopus 로고
    • The approach to mutation-selection balance in an infinite asexual population, and the evolution of mutation rates
    • Johnson T (1999) The approach to mutation-selection balance in an infinite asexual population, and the evolution of mutation rates. Proc Biol Sci 266: 2389-2397.
    • (1999) Proc Biol Sci , vol.266 , pp. 2389-2397
    • Johnson, T.1
  • 12
    • 84959609205 scopus 로고
    • On the evolutionary adjustment of spontaneous mutation rates
    • Kimura M (1967) On the evolutionary adjustment of spontaneous mutation rates. Genet Res 9: 23-34.
    • (1967) Genet Res , vol.9 , pp. 23-34
    • Kimura, M.1
  • 13
    • 0036264163 scopus 로고    scopus 로고
    • The fate of microbial mutators
    • de Visser JA (2002) The fate of microbial mutators. Microbiology 148: 1247-52.
    • (2002) Microbiology , vol.148 , pp. 1247-1252
    • de Visser, J.A.1
  • 14
    • 0035970874 scopus 로고    scopus 로고
    • Costs and benefits of high mutation rates: Adaptive evolution of bacteria in the mouse gut
    • Giraud A, Matic I, Tenaillon O, Clara A, Radman M, Fons M, Taddei F (2001) Costs and benefits of high mutation rates: adaptive evolution of bacteria in the mouse gut. Science 291: 2606-2608.
    • (2001) Science , vol.291 , pp. 2606-2608
    • Giraud, A.1    Matic, I.2    Tenaillon, O.3    Clara, A.4    Radman, M.5    Fons, M.6    Taddei, F.7
  • 15
    • 0030620273 scopus 로고    scopus 로고
    • Evolution of high mutation rates in experimental populations of Escherichia coli
    • Sniegowski PD, Gerrish PJ, Lenski RE (1997) Evolution of high mutation rates in experimental populations of Escherichia coli. Nature 387: 703-705.
    • (1997) Nature , vol.387 , pp. 703-705
    • Sniegowski, P.D.1    Gerrish, P.J.2    Lenski, R.E.3
  • 17
    • 37249025333 scopus 로고    scopus 로고
    • Coevolution with viruses drives the evolution of bacterial mutation rates
    • Pal C, Maciá MD, Oliver A, Schachar I, Buckling A (2007) Coevolution with viruses drives the evolution of bacterial mutation rates. Nature 450: 1079-1081.
    • (2007) Nature , vol.450 , pp. 1079-1081
    • Pal, C.1    Maciá, M.D.2    Oliver, A.3    Schachar, I.4    Buckling, A.5
  • 18
    • 0021032993 scopus 로고
    • Competition between high and low mutating strains of Escherichia coli
    • Chao L, Cox EC (1983) Competition between high and low mutating strains of Escherichia coli. Evolution 37: 125-134.
    • (1983) Evolution , vol.37 , pp. 125-134
    • Chao, L.1    Cox, E.C.2
  • 19
    • 33646397599 scopus 로고    scopus 로고
    • Evolution of mutation rates in bacteria
    • Denamur E, Matic I (2006) Evolution of mutation rates in bacteria. Mol Microbiol 60: 820-827.
    • (2006) Mol Microbiol , vol.60 , pp. 820-827
    • Denamur, E.1    Matic, I.2
  • 20
    • 0141453385 scopus 로고    scopus 로고
    • Stationary phase mutagenesis: Mechanisms that accelerate adaptation of microbial populations under environmental stress
    • Kivisaar M (2003) Stationary phase mutagenesis: mechanisms that accelerate adaptation of microbial populations under environmental stress. Environ Microbiol 5: 814-827.
    • (2003) Environ Microbiol , vol.5 , pp. 814-827
    • Kivisaar, M.1
  • 21
    • 33646130830 scopus 로고    scopus 로고
    • Simple sequence repeats as advantageous mutators in evolution
    • Kashi Y, King DG (2006) Simple sequence repeats as advantageous mutators in evolution. Trends Genet 22: 253-259.
    • (2006) Trends Genet , vol.22 , pp. 253-259
    • Kashi, Y.1    King, D.G.2
  • 22
    • 33745490138 scopus 로고    scopus 로고
    • Increased fidelity reduces poliovirus fitness and virulence under selective pressure in mice
    • doi:10.1371/journal.ppat.0010011
    • Pfeiffer JK, Kirkegaard K (2005) Increased fidelity reduces poliovirus fitness and virulence under selective pressure in mice. PLoS Pathog 1: e11. doi:10.1371/journal.ppat.0010011.
    • (2005) PLoS Pathog , vol.1
    • Pfeiffer, J.K.1    Kirkegaard, K.2
  • 23
    • 31144465690 scopus 로고    scopus 로고
    • Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population
    • Vignuzzi M, Stone JK, Arnold JJ, Cameron CE, Andino R (2006) Quasispecies diversity determines pathogenesis through cooperative interactions in a viral population. Nature 439: 344-348.
    • (2006) Nature , vol.439 , pp. 344-348
    • Vignuzzi, M.1    Stone, J.K.2    Arnold, J.J.3    Cameron, C.E.4    Andino, R.5
  • 24
    • 22544478419 scopus 로고    scopus 로고
    • The cost of replication fidelity in an RNA virus
    • Furió V, Moya A, Sanjuán R (2005) The cost of replication fidelity in an RNA virus. Proc Natl Acad Sci U S A 102: 10233-10237.
    • (2005) Proc Natl Acad Sci U S A , vol.102 , pp. 10233-10237
    • Furió, V.1    Moya, A.2    Sanjuán, R.3
  • 25
    • 1842454622 scopus 로고    scopus 로고
    • Avida: A software platform for research in computational evolutionary biology
    • Ofria C, Wilke CO (2004) Avida: a software platform for research in computational evolutionary biology. Artif Life 10: 191-229.
    • (2004) Artif Life , vol.10 , pp. 191-229
    • Ofria, C.1    Wilke, C.O.2
  • 26
    • 3042752559 scopus 로고    scopus 로고
    • Adaptive radiation from resource competition in digital organisms
    • Chow SS, Wilke CO, Ofria C, Lenski RE, Adami C (2004) Adaptive radiation from resource competition in digital organisms. Science 305: 84-86.
    • (2004) Science , vol.305 , pp. 84-86
    • Chow, S.S.1    Wilke, C.O.2    Ofria, C.3    Lenski, R.E.4    Adami, C.5
  • 27
    • 0033549752 scopus 로고    scopus 로고
    • Genome complexity, robustness and genetic interactions in digital organisms
    • Lenski RE, Ofria C, Collier TC, Adami C (1999) Genome complexity, robustness and genetic interactions in digital organisms. Nature 400: 661-664.
    • (1999) Nature , vol.400 , pp. 661-664
    • Lenski, R.E.1    Ofria, C.2    Collier, T.C.3    Adami, C.4
  • 28
    • 0038668776 scopus 로고    scopus 로고
    • The evolutionary origin of complex features
    • Lenski RE, Ofria C, Pennock RT, Adami C (2003) The evolutionary origin of complex features. Nature 423: 139-144.
    • (2003) Nature , vol.423 , pp. 139-144
    • Lenski, R.E.1    Ofria, C.2    Pennock, R.T.3    Adami, C.4
  • 29
    • 33646673346 scopus 로고    scopus 로고
    • Sexual reproduction reshapes the genetic architecture of digital organisms
    • Misevic D, Ofria C, Lenski RE (2006) Sexual reproduction reshapes the genetic architecture of digital organisms. Proc Biol Sci 273: 457-464.
    • (2006) Proc Biol Sci , vol.273 , pp. 457-464
    • Misevic, D.1    Ofria, C.2    Lenski, R.E.3
  • 31
    • 0035913336 scopus 로고    scopus 로고
    • Evolution of digital organisms at high mutation rates leads to survival of the flattest
    • Wilke CO, Wang JL, Ofria C, Lenski RE, Adami C (2001) Evolution of digital organisms at high mutation rates leads to survival of the flattest. Nature 412: 331-333.
    • (2001) Nature , vol.412 , pp. 331-333
    • Wilke, C.O.1    Wang, J.L.2    Ofria, C.3    Lenski, R.E.4    Adami, C.5
  • 32
    • 0038101338 scopus 로고    scopus 로고
    • Selective pressures on genomes in molecular evolution
    • Ofria C, Adami C, Collier TC (2003) Selective pressures on genomes in molecular evolution. J Theor Biol 222: 447-483.
    • (2003) J Theor Biol , vol.222 , pp. 447-483
    • Ofria, C.1    Adami, C.2    Collier, T.C.3
  • 33
    • 31144437286 scopus 로고    scopus 로고
    • Digital genetics: Unravelling the genetic basis of evolution
    • Adami C (2006) Digital genetics: unravelling the genetic basis of evolution. Nature Rev Genet 7: 109-118.
    • (2006) Nature Rev Genet , vol.7 , pp. 109-118
    • Adami, C.1
  • 34
    • 34548089583 scopus 로고    scopus 로고
    • Kin-selection: The rise and fall of kin-cheaters
    • Pollack J, Bedau M, Husbands P, Ikegami T, Watson R, eds, Cambridge Massachusetts, MIT Press. pp
    • Goings S, Clune J, Ofria C, Pennock RT (2004) Kin-selection: the rise and fall of kin-cheaters. In: Pollack J, Bedau M, Husbands P, Ikegami T, Watson R, eds. Proceedings of Artificial Life Nine. Cambridge (Massachusetts): MIT Press. pp 303-308.
    • (2004) Proceedings of Artificial Life , vol.Nine , pp. 303-308
    • Goings, S.1    Clune, J.2    Ofria, C.3    Pennock, R.T.4
  • 37
    • 0001857938 scopus 로고    scopus 로고
    • Intelligent mutation rate control in canonical genetic algorithm
    • Ras ZV, Michalewicz M, eds, Berlin: Springer. pp
    • Bäck T, Schütz M (1996) Intelligent mutation rate control in canonical genetic algorithm. In: Ras ZV, Michalewicz M, eds. Foundations of Intelligent Systems, 9th International Symposium. Berlin: Springer. pp 158-160.
    • (1996) Foundations of Intelligent Systems, 9th International Symposium , pp. 158-160
    • Bäck, T.1    Schütz, M.2
  • 38
    • 33846551980 scopus 로고    scopus 로고
    • Empirical fitness landscapes reveal accessible evolutionary paths
    • Poelwijk FJ, Kiviet DJ, Weinreich DM, Tans SJ (2007) Empirical fitness landscapes reveal accessible evolutionary paths. Nature 445: 383-386.
    • (2007) Nature , vol.445 , pp. 383-386
    • Poelwijk, F.J.1    Kiviet, D.J.2    Weinreich, D.M.3    Tans, S.J.4
  • 41
    • 0030747157 scopus 로고    scopus 로고
    • RNA virus mutations and fitness for survival
    • Domingo E, Holland JJ (1997) RNA virus mutations and fitness for survival. Annu Rev Microbiol 51: 151-178.
    • (1997) Annu Rev Microbiol , vol.51 , pp. 151-178
    • Domingo, E.1    Holland, J.J.2
  • 42
    • 39049181029 scopus 로고    scopus 로고
    • Furió V, Moya A, Sanjuán R (2007) The cost of replication fidelity in human immunodeficiency virus type 1. Proc Biol Sci 274: 225-230.
    • Furió V, Moya A, Sanjuán R (2007) The cost of replication fidelity in human immunodeficiency virus type 1. Proc Biol Sci 274: 225-230.
  • 44
    • 0035843136 scopus 로고    scopus 로고
    • Combinatorial and computational challenges for biocatalyst design
    • Arnold FH (2001) Combinatorial and computational challenges for biocatalyst design. Nature 409: 253-257.
    • (2001) Nature , vol.409 , pp. 253-257
    • Arnold, F.H.1
  • 45
    • 0034739052 scopus 로고    scopus 로고
    • Automatic design and manufacture of artificial lifeforms
    • Lipson H, Pollack JB (2000) Automatic design and manufacture of artificial lifeforms. Nature 406: 974-978.
    • (2000) Nature , vol.406 , pp. 974-978
    • Lipson, H.1    Pollack, J.B.2
  • 47
    • 32444438299 scopus 로고    scopus 로고
    • The problem with self-adaptive mutation rates in some environments
    • Byer H-G, O'Reilley U-M, Arnold DV, Banzhaf W, Blum C, et al, eds, Washington, DC: Association for Computing Machinery. pp
    • Rand W, Riolo R (2005) The problem with self-adaptive mutation rates in some environments. In: Byer H-G, O'Reilley U-M, Arnold DV, Banzhaf W, Blum C, et al., eds. Proceedings of the 2005 Conference on Genetic and Evolutionary Computation. Washington, DC: Association for Computing Machinery. pp 1493-1500.
    • (2005) Proceedings of the 2005 Conference on Genetic and Evolutionary Computation , pp. 1493-1500
    • Rand, W.1    Riolo, R.2
  • 48
    • 34547718126 scopus 로고    scopus 로고
    • Investigations in Meta-GAs: Panaceas or pipe dreams?
    • Byer H-G, O'Reilley U-M, Arnold DV, Banzhaf W, Blum C, et al, eds, Washington, DC: Association for Computing Machinery. pp
    • Clune J, Goings S, Goodman ED, Punch W (2005) Investigations in Meta-GAs: panaceas or pipe dreams? In: Byer H-G, O'Reilley U-M, Arnold DV, Banzhaf W, Blum C, et al., eds. Proceedings of the 2005 Conference on Genetic and Evolutionary Computation. Washington, DC: Association for Computing Machinery. pp 235-241.
    • (2005) Proceedings of the 2005 Conference on Genetic and Evolutionary Computation , pp. 235-241
    • Clune, J.1    Goings, S.2    Goodman, E.D.3    Punch, W.4
  • 49
    • 41049095398 scopus 로고    scopus 로고
    • Mutator dynamics in fluctuating environments
    • Travis JM, Travis ER (2002) Mutator dynamics in fluctuating environments. Proc Biol Sci 269: 591-597.
    • (2002) Proc Biol Sci , vol.269 , pp. 591-597
    • Travis, J.M.1    Travis, E.R.2


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.