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Volumn 53, Issue 19, 2008, Pages 2989-2999

Variation at the transcriptional level among Chinese natural populations of Arabidopsis thaliana in response to cold stress

Author keywords

Arabidopsis thaliana; Chinese populations; Cold tolerance; Microarray; Transcriptional profiles

Indexed keywords

ARABIDOPSIS; ARABIDOPSIS THALIANA;

EID: 52949127331     PISSN: 10016538     EISSN: 18619541     Source Type: Journal    
DOI: 10.1007/s11434-008-0403-5     Document Type: Article
Times cited : (15)

References (47)
  • 1
    • 0034649566 scopus 로고    scopus 로고
    • Analysis of the genome sequence of the flowering plant Arabidopsis thaliana
    • The Arabidopsis Genome Initiative.
    • The Arabidopsis Genome Initiative. 2000 Analysis of the genome sequence of the flowering plant Arabidopsis thaliana Nature 408 796 815
    • (2000) Nature , vol.408 , pp. 796-815
  • 2
    • 27744585200 scopus 로고    scopus 로고
    • From phenotypic to molecular polymorphisms involved in naturally occurring variation of plant development
    • C. Alonso-Blanco B. Mendez-Vigo M. Koornneef 2005 From phenotypic to molecular polymorphisms involved in naturally occurring variation of plant development Int J Dev Biol 49 717 732
    • (2005) Int J Dev Biol , vol.49 , pp. 717-732
    • Alonso-Blanco, C.1    Mendez-Vigo, B.2    Koornneef, M.3
  • 4
    • 33745562481 scopus 로고    scopus 로고
    • Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis
    • T. Mitchell-Olds J. Schmitt 2006 Genetic mechanisms and evolutionary significance of natural variation in Arabidopsis Nature 441 947 952
    • (2006) Nature , vol.441 , pp. 947-952
    • Mitchell-Olds, T.1    Schmitt, J.2
  • 5
    • 0033498862 scopus 로고    scopus 로고
    • Plant cold acclimation: Freezing tolerance genes and regulatory mechanisms
    • M. F. Thomashow 1999 Plant cold acclimation: Freezing tolerance genes and regulatory mechanisms Annu Rev Plant Physiol Plant Mol Biol 50 571 599
    • (1999) Annu Rev Plant Physiol Plant Mol Biol , vol.50 , pp. 571-599
    • Thomashow, M.F.1
  • 6
    • 0842286227 scopus 로고
    • Cold acclimation and freezing stress tolerance: Role of protein metabolism
    • C. L. Guy 1990 Cold acclimation and freezing stress tolerance: Role of protein metabolism Annu Rev Plant Physiol Plant Mol Biol 41 187 223
    • (1990) Annu Rev Plant Physiol Plant Mol Biol , vol.41 , pp. 187-223
    • Guy, C.L.1
  • 7
    • 0035144222 scopus 로고    scopus 로고
    • So what's new in the field of plant cold acclimation?
    • M. F. Thomashow 2001 So what's new in the field of plant cold acclimation? Lots! Plant Physiol 125 89 93
    • (2001) Lots! Plant Physiol , vol.125 , pp. 89-93
    • Thomashow, M.F.1
  • 8
    • 0141496283 scopus 로고    scopus 로고
    • A cell surface receptor mediates extracellular Ca(2+) sensing in guard cells
    • S. Han R. Tang L. K. Anderson 2003 A cell surface receptor mediates extracellular Ca(2+) sensing in guard cells Nature 425 196 200
    • (2003) Nature , vol.425 , pp. 196-200
    • Han, S.1    Tang, R.2    Anderson, L.K.3
  • 9
    • 0033801589 scopus 로고    scopus 로고
    • Early steps in cold sensing by plant cells: The role of actin cytoskeleton and membrane fluidity
    • B. L. Orvar V. Sangwan F. Omann 2000 Early steps in cold sensing by plant cells: the role of actin cytoskeleton and membrane fluidity Plant J 23 785 794
    • (2000) Plant J , vol.23 , pp. 785-794
    • Orvar, B.L.1    Sangwan, V.2    Omann, F.3
  • 10
    • 0036007438 scopus 로고    scopus 로고
    • Microarrays in ecology and evolution: A preview
    • G. Gibson 2002 Microarrays in ecology and evolution: A preview Mol Ecol 11 17 24
    • (2002) Mol Ecol , vol.11 , pp. 17-24
    • Gibson, G.1
  • 11
    • 1642564514 scopus 로고    scopus 로고
    • Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri
    • M. Becher I. N. Talke L. Krall 2004 Cross-species microarray transcript profiling reveals high constitutive expression of metal homeostasis genes in shoots of the zinc hyperaccumulator Arabidopsis halleri Plant J 37 251 268
    • (2004) Plant J , vol.37 , pp. 251-268
    • Becher, M.1    Talke, I.N.2    Krall, L.3
  • 12
    • 1642523628 scopus 로고    scopus 로고
    • Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors
    • M. Weber E. Harada C. Vess 2004 Comparative microarray analysis of Arabidopsis thaliana and Arabidopsis halleri roots identifies nicotianamine synthase, a ZIP transporter and other genes as potential metal hyperaccumulation factors Plant J 37 269 281
    • (2004) Plant J , vol.37 , pp. 269-281
    • Weber, M.1    Harada, E.2    Vess, C.3
  • 13
    • 33344462374 scopus 로고    scopus 로고
    • Contribution of transcriptional regulation to natural variations in Arabidopsis
    • W. Chen S. Chang M. E. Hudson 2005 Contribution of transcriptional regulation to natural variations in Arabidopsis Genome Biol 6 R32
    • (2005) Genome Biol , vol.6 , pp. 32
    • Chen, W.1    Chang, S.2    Hudson, M.E.3
  • 14
    • 32544437127 scopus 로고    scopus 로고
    • Genetic analysis of variation in gene expression in Arabidopsis thaliana
    • M. Vuylsteke F. van Eeuwijk P. van Hummelen 2005 Genetic analysis of variation in gene expression in Arabidopsis thaliana Genetics 171 1267 1275
    • (2005) Genetics , vol.171 , pp. 1267-1275
    • Vuylsteke, M.1    Van Eeuwijk, F.2    Van Hummelen, P.3
  • 15
    • 2342501846 scopus 로고    scopus 로고
    • Development and evaluation of an Arabidopsis whole genome Affymetrix probe array
    • J. C. Redman B. J. Haas G. Tanimoto 2004 Development and evaluation of an Arabidopsis whole genome Affymetrix probe array Plant J 38 545 561
    • (2004) Plant J , vol.38 , pp. 545-561
    • Redman, J.C.1    Haas, B.J.2    Tanimoto, G.3
  • 16
    • 0141725448 scopus 로고    scopus 로고
    • Global analysis of gene expression using GeneChip microar rays
    • T. Zhu 2003 Global analysis of gene expression using GeneChip microar rays Curr Opin Plant Biol 6 418 425
    • (2003) Curr Opin Plant Biol , vol.6 , pp. 418-425
    • Zhu, T.1
  • 17
    • 0036671216 scopus 로고    scopus 로고
    • Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway
    • S. Fowler M. F. Thomashow 2002 Arabidopsis transcriptome profiling indicates that multiple regulatory pathways are activated during cold acclimation in addition to the CBF cold response pathway Plant Cell 14 1675 1690
    • (2002) Plant Cell , vol.14 , pp. 1675-1690
    • Fowler, S.1    Thomashow, M.F.2
  • 18
    • 38149040817 scopus 로고    scopus 로고
    • A global survey of gene regulation during cold acclimation in Arabidopsis thaliana
    • M. A. Hannah A. G. Heyer D. K. Hincha 2005 A global survey of gene regulation during cold acclimation in Arabidopsis thaliana PLoS Genet 1 e26
    • (2005) PLoS Genet , vol.1 , pp. 26
    • Hannah, M.A.1    Heyer, A.G.2    Hincha, D.K.3
  • 19
    • 0036909761 scopus 로고    scopus 로고
    • Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress
    • J. A. Kreps Y. Wu H. S. Chang 2002 Transcriptome changes for Arabidopsis in response to salt, osmotic, and cold stress Plant Physiol 130 2129 2141
    • (2002) Plant Physiol , vol.130 , pp. 2129-2141
    • Kreps, J.A.1    Wu, Y.2    Chang, H.S.3
  • 20
    • 2942733588 scopus 로고    scopus 로고
    • Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems
    • K. Maruyama Y. Sakuma M. Kasuga 2004 Identification of cold-inducible downstream genes of the Arabidopsis DREB1A/CBF3 transcriptional factor using two microarray systems Plant J 38 982 993
    • (2004) Plant J , vol.38 , pp. 982-993
    • Maruyama, K.1    Sakuma, Y.2    Kasuga, M.3
  • 21
    • 33745115574 scopus 로고    scopus 로고
    • Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays
    • Y. Oono M. Seki M. Satou 2006 Monitoring expression profiles of Arabidopsis genes during cold acclimation and deacclimation using DNA microarrays Funct Integr Genomics 6 212 234
    • (2006) Funct Integr Genomics , vol.6 , pp. 212-234
    • Oono, Y.1    Seki, M.2    Satou, M.3
  • 22
    • 0036679053 scopus 로고    scopus 로고
    • Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray
    • M. Seki M. Narusaka J. Ishida 2002 Monitoring the expression profiles of 7000 Arabidopsis genes under drought, cold and high-salinity stresses using a full-length cDNA microarray Plant J 31 279 792
    • (2002) Plant J , vol.31 , pp. 279-792
    • Seki, M.1    Narusaka, M.2    Ishida, J.3
  • 23
    • 33748778753 scopus 로고    scopus 로고
    • Natural genetic variation of freezing tolerance in Arabidopsis
    • M. A. Hannah D. Wiese S. Freund 2006 Natural genetic variation of freezing tolerance in Arabidopsis Plant Physiol 142 98 112
    • (2006) Plant Physiol , vol.142 , pp. 98-112
    • Hannah, M.A.1    Wiese, D.2    Freund, S.3
  • 24
    • 33644833484 scopus 로고    scopus 로고
    • Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis
    • C. Alonso-Blanco C. Gomez-Mena F. Llorente 2005 Genetic and molecular analyses of natural variation indicate CBF2 as a candidate gene for underlying a freezing tolerance quantitative trait locus in Arabidopsis Plant Physiol 139 1304 1312
    • (2005) Plant Physiol , vol.139 , pp. 1304-1312
    • Alonso-Blanco, C.1    Gomez-Mena, C.2    Llorente, F.3
  • 25
    • 2542552767 scopus 로고    scopus 로고
    • Heterosis in the freezing tolerance of crosses between two Arabidopsis thaliana accessions (Columbia-0 and C24) that show differences in non-acclimated and acclimated freezing tolerance
    • P. Rohde D. K. Hincha A. G. Heyer 2004 Heterosis in the freezing tolerance of crosses between two Arabidopsis thaliana accessions (Columbia-0 and C24) that show differences in non-acclimated and acclimated freezing tolerance Plant J 38 790 799
    • (2004) Plant J , vol.38 , pp. 790-799
    • Rohde, P.1    Hincha, D.K.2    Heyer, A.G.3
  • 26
    • 4944234128 scopus 로고    scopus 로고
    • The role of raffinose in the cold acclimation response of Arabidopsis thaliana
    • E. Zuther K. Buchel M. Hundertmark 2004 The role of raffinose in the cold acclimation response of Arabidopsis thaliana FEBS Lett 576 169 173
    • (2004) FEBS Lett , vol.576 , pp. 169-173
    • Zuther, E.1    Buchel, K.2    Hundertmark, M.3
  • 27
    • 34748837256 scopus 로고    scopus 로고
    • Genetic diversity of the natural populations of Arabidopsis thaliana in China
    • F. He D. Kang Y. Ren 2007 Genetic diversity of the natural populations of Arabidopsis thaliana in China Heredity 99 423 431
    • (2007) Heredity , vol.99 , pp. 423-431
    • He, F.1    Kang, D.2    Ren, Y.3
  • 28
    • 32344446035 scopus 로고    scopus 로고
    • An indole-3-acetic acid carboxyl methyltransferase regulates Arabidopsis leaf development
    • G. Qin H. Gu Y. Zhao 2005 An indole-3-acetic acid carboxyl methyltransferase regulates Arabidopsis leaf development Plant Cell 17 2693 2704
    • (2005) Plant Cell , vol.17 , pp. 2693-2704
    • Qin, G.1    Gu, H.2    Zhao, Y.3
  • 29
    • 27544472676 scopus 로고    scopus 로고
    • Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary
    • X. Mao T. Cai J. G. Olyarchuk 2005 Automated genome annotation and pathway identification using the KEGG Orthology (KO) as a controlled vocabulary Bioinformatics 21 3787 3793
    • (2005) Bioinformatics , vol.21 , pp. 3787-3793
    • Mao, X.1    Cai, T.2    Olyarchuk, J.G.3
  • 30
    • 1042267616 scopus 로고    scopus 로고
    • The WRKY70 transcription factor: A node of convergence for jasmonate-mediated and salicylate-mediated signals in plant defense
    • J. Li G. Brader E. T. Palva 2004 The WRKY70 transcription factor: A node of convergence for jasmonate-mediated and salicylate-mediated signals in plant defense Plant Cell 16 319 331
    • (2004) Plant Cell , vol.16 , pp. 319-331
    • Li, J.1    Brader, G.2    Palva, E.T.3
  • 31
    • 2942587000 scopus 로고    scopus 로고
    • Biochemical and molecular responses to water stress in resurrection plants
    • G. Bernacchia A. Furini 2004 Biochemical and molecular responses to water stress in resurrection plants Physiol Plant 121 175 181
    • (2004) Physiol Plant , vol.121 , pp. 175-181
    • Bernacchia, G.1    Furini, A.2
  • 32
    • 33645105776 scopus 로고    scopus 로고
    • Gene regulation during cold acclimation in plants
    • V. Chinnusamy J. Zhu J. K. Zhu 2006 Gene regulation during cold acclimation in plants Phys Plant 2006 52 61
    • (2006) Phys Plant , vol.2006 , pp. 52-61
    • Chinnusamy, V.1    Zhu, J.2    Zhu, J.K.3
  • 33
    • 34648834403 scopus 로고    scopus 로고
    • Cold stress regulation of gene expression in plants
    • V. Chinnusamy J. Zhu J. K. Zhu 2007 Cold stress regulation of gene expression in plants Trends Plant Sci 12 444 451
    • (2007) Trends Plant Sci , vol.12 , pp. 444-451
    • Chinnusamy, V.1    Zhu, J.2    Zhu, J.K.3
  • 34
    • 27744433745 scopus 로고    scopus 로고
    • The molecular biology of the low-temperature response in plants
    • P. Sharma N. Sharma R. Deswal 2005 The molecular biology of the low-temperature response in plants Bioessays 27 1048 1059
    • (2005) Bioessays , vol.27 , pp. 1048-1059
    • Sharma, P.1    Sharma, N.2    Deswal, R.3
  • 36
    • 3042711793 scopus 로고    scopus 로고
    • An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway
    • J. Zhu H. Shi B. H. Lee 2004 An Arabidopsis homeodomain transcription factor gene, HOS9, mediates cold tolerance through a CBF-independent pathway Proc Natl Acad Sci USA 101 9873 9878
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 9873-9878
    • Zhu, J.1    Shi, H.2    Lee, B.H.3
  • 37
    • 22244455773 scopus 로고    scopus 로고
    • HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants
    • J. Zhu P. E. Verslues X. Zheng 2005 HOS10 encodes an R2R3-type MYB transcription factor essential for cold acclimation in plants Proc Natl Acad Sci USA 102 9966 9971
    • (2005) Proc Natl Acad Sci USA , vol.102 , pp. 9966-9971
    • Zhu, J.1    Verslues, P.E.2    Zheng, X.3
  • 38
    • 0037447146 scopus 로고    scopus 로고
    • ICE1: A regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis
    • V. Chinnusamy M. Ohta S. Kanrar 2003 ICE1: A regulator of cold-induced transcriptome and freezing tolerance in Arabidopsis Genes Dev 17 1043 1054
    • (2003) Genes Dev , vol.17 , pp. 1043-1054
    • Chinnusamy, V.1    Ohta, M.2    Kanrar, S.3
  • 39
    • 33645013937 scopus 로고    scopus 로고
    • The alternative oxidase of plant mitochondria is involved in the acclimation of shoot growth at low temperature. a study of Arabidopsis AOX1a transgenic plants
    • F. Fiorani A. L. Umbach J. N. Siedow 2005 The alternative oxidase of plant mitochondria is involved in the acclimation of shoot growth at low temperature. A study of Arabidopsis AOX1a transgenic plants Plant Physiol 139 1795 1805
    • (2005) Plant Physiol , vol.139 , pp. 1795-1805
    • Fiorani, F.1    Umbach, A.L.2    Siedow, J.N.3
  • 40
    • 0029139605 scopus 로고
    • Low temperature induces the accumulation of phenylalanine ammonia-lyase and chalcone synthase mRNAs of Arabidopsis thaliana in a light-dependent manner
    • A. Leyva J. A. Jarillo J. Salinas 1995 Low temperature induces the accumulation of phenylalanine ammonia-lyase and chalcone synthase mRNAs of Arabidopsis thaliana in a light-dependent manner Plant Physiol 108 39 46
    • (1995) Plant Physiol , vol.108 , pp. 39-46
    • Leyva, A.1    Jarillo, J.A.2    Salinas, J.3
  • 41
    • 0031017671 scopus 로고    scopus 로고
    • Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit
    • E. J. Stockinger S. J. Gilmour M. F. Thomashow 1997 Arabidopsis thaliana CBF1 encodes an AP2 domain-containing transcriptional activator that binds to the C-repeat/DRE, a cis-acting DNA regulatory element that stimulates transcription in response to low temperature and water deficit Proc Natl Acad Sci USA 94 1035 1040
    • (1997) Proc Natl Acad Sci USA , vol.94 , pp. 1035-1040
    • Stockinger, E.J.1    Gilmour, S.J.2    Thomashow, M.F.3
  • 42
    • 6344241962 scopus 로고    scopus 로고
    • Arabidopsis transcriptional activators CBF1, CBF2, and CBF3 have matching functional activities
    • S. J. Gilmour S. G. Fowler M. F. Thomashow 2004 Arabidopsis transcriptional activators CBF1, CBF2, and CBF3 have matching functional activities Plant Mol Biol 54 767 781
    • (2004) Plant Mol Biol , vol.54 , pp. 767-781
    • Gilmour, S.J.1    Fowler, S.G.2    Thomashow, M.F.3
  • 43
    • 0034527513 scopus 로고    scopus 로고
    • Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation
    • S. J. Gilmour A. M. Sebolt M. P. Salazar 2000 Overexpression of the Arabidopsis CBF3 transcriptional activator mimics multiple biochemical changes associated with cold acclimation Plant Physiol 124 1854 1865
    • (2000) Plant Physiol , vol.124 , pp. 1854-1865
    • Gilmour, S.J.1    Sebolt, A.M.2    Salazar, M.P.3
  • 44
    • 0032213180 scopus 로고    scopus 로고
    • Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression
    • S. J. Gilmour D. G. Zarka E. J. Stockinger 1998 Low temperature regulation of the Arabidopsis CBF family of AP2 transcriptional activators as an early step in cold-induced COR gene expression Plant J 16 433 442
    • (1998) Plant J , vol.16 , pp. 433-442
    • Gilmour, S.J.1    Zarka, D.G.2    Stockinger, E.J.3
  • 45
    • 0032478635 scopus 로고    scopus 로고
    • Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance
    • K. R. Jaglo-Ottosen S. J. Gilmour D. G. Zarka 1998 Arabidopsis CBF1 overexpression induces COR genes and enhances freezing tolerance Science 280 104 106
    • (1998) Science , vol.280 , pp. 104-106
    • Jaglo-Ottosen, K.R.1    Gilmour, S.J.2    Zarka, D.G.3
  • 46
    • 0032144961 scopus 로고    scopus 로고
    • Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought-and low-temperature-responsive gene expression, respectively, in Arabidopsis
    • Q. Liu M. Kasuga Y. Sakuma 1998 Two transcription factors, DREB1 and DREB2, with an EREBP/AP2 DNA binding domain separate two cellular signal transduction pathways in drought-and low-temperature-responsive gene expression, respectively, in Arabidopsis Plant Cell 10 1391 1406
    • (1998) Plant Cell , vol.10 , pp. 1391-1406
    • Liu, Q.1    Kasuga, M.2    Sakuma, Y.3
  • 47
    • 1642289015 scopus 로고    scopus 로고
    • CBF2_DREB1C is a negative regulator of CBF1_DREB1B and CBF3_DREB1A expression and plays a central role in stress tolerance in Arabidopsis
    • F. Novillo J. M. Alonso J. R. Ecker 2004 CBF2_DREB1C is a negative regulator of CBF1_DREB1B and CBF3_DREB1A expression and plays a central role in stress tolerance in Arabidopsis Proc Natl Acad Sci USA 101 3985 3990
    • (2004) Proc Natl Acad Sci USA , vol.101 , pp. 3985-3990
    • Novillo, F.1    Alonso, J.M.2    Ecker, J.R.3


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