CD spectra show the relational style between Zic-, Gli-, Glis-zinc finger protein and DNA

Biochimica et Biophysica Acta - Proteins and Proteomics

Volumn 1784, Issue 7-8, 2008, Pages 1011-1019

  Sakai Kato, Kumiko ^a   Ishiguro, Akira ^b   Mikoshiba, Katsuhiko ^b   Aruga, Jun ^b   Utsunomiya Tate, Naoko ^a  

^a MUSASHINO UNIVERSITY   (Japan)

^b RIKEN BRAIN SCIENCE INSTITUTE   (Japan)

Author keywords

helix; Circular dichroism; Protein DNA interaction; Transcription factor; Zinc finger

Indexed keywords

DNA; PROTEIN DERIVATIVE; ZINC FINGER PROTEIN;

ALPHA HELIX; ARTICLE; CIRCULAR DICHROISM; DNA BINDING; PHYLOGENY; PRIORITY JOURNAL; PROTEIN DNA INTERACTION; PROTEIN DOMAIN; PROTEIN FOLDING; PROTEIN STRUCTURE; THERMOSTABILITY;

AMINO ACID SEQUENCE; ANIMALS; CIRCULAR DICHROISM; DNA; HUMANS; MICE; MOLECULAR SEQUENCE DATA; PROTEIN STRUCTURE, SECONDARY; SEQUENCE HOMOLOGY, AMINO ACID; TRANSCRIPTION FACTORS; ZINC FINGERS;

MYOXUS;

EID: 52449135489     PISSN: 15709639     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.bbapap.2008.01.013     Document Type: Article

References (38)

1. Aruga J. The role of Zic genes in neural development. Mol. Cell. Neurosci. 26 (2004) 205-221
2. Nakata K., Nagai T., Aruga J., and Mikoshiba K. Xenopus Zic3, a primary regulator both in neural and neural crest development. Proc. Natl. Acad. Sci. U. S. A. 94 (1997) 11980-11985
3. Inoue T., Hatayama M., Tohmonda T., Itohara S., Aruga J., and Mikoshiba K. Mouse Zic5 deficiency results in neural tube defects and hypoplasia of cephalic neural crest derivatives. Dev. Biol. 270 (2004) 146-162
4. Aruga J., Mizugishi K., Koseki H., Balling K.I.R., Noda T., and Mikoshiba K. Zic1 regulates the pattering of vertebral arches in cooperation with Gli3. Mech. Dev. 89 (1999) 141-150
5. Nagai T., Aruga J., Minowa O., Sugimoto T., Ohno Y., Noda T., and Mikoshiba K. Zic2 regulates the kinetics of neurulation. Proc. Natl. Acad. Sci. U. S. A. 97 (2000) 1618-1623
6. Gebbia M., Ferrero G.B., Pilia G., Bassi M.T., Aylsworth A., Penman-Splitt M., Bird L.M., Bamforth J.S., Burn J., Schlessinger D., Nelson D.L., and Casey B. X-linked situs abnormalities result from mutations in ZIC3. Nat. Genet. 17 (1997) 305-308
7. Purandare S.M., Ware S.M., Kwan K.M., Gebbia M., Bassi M.T., Deng J.M., Vogel H., Behringer R.R., Belmont J.W., and Casey B. A complex syndrome of left-right axis, central nervous system and axial skeleton defects in Zic3 mutant mice. Development 129 (2002) 2293-2302
8. Benedyk M.J., Mullen J.R., and DiNardo S. Odd-paired: a zinc finger pair-rule protein required for the timely activation of engrailed and wingless in Drosophila embryos. Genes Dev. 8 (1994) 105-117
9. Aruga J., Yokota N., Hashimoto M., Furuichi T., Fukuda M., and Mikoshiba K. A novel zinc finger protein, zic, is involved in neurogenesis, especially in the cell lineage of cerebellar granule cells. J. Neurochem. 63 (1994) 1880-1890
10. Aruga J., Nagai T., Tokuyama T., Hayashizaki Y., Okazaki Y., Chapman V.M., and Mikoshiba K. The mouse zic gene family. Homologues of the Drosophila pair-rule gene odd-paired. J. Biol. Chem. 271 (1996) 1043-1047
11. Aruga J., Yozu A., Hayashizaki Y., Okazaki Y., Chapman V.M., and Mikoshiba K. Identification and characterization of Zic4, a new member of the mouse Zic gene family. Gene 172 (1996) 291-294
12. Brown S.A., Warburton D., Brown L.Y., Yu C.Y., Roeder E.R., Stengel-Rutkowski S., Hennekam R.C., and Muenke M. Holoprosencephaly due to mutations in ZIC2, a homologue of Drosophila odd-paired. Nat. Genet. 20 (1998) 180-183
13. Yokota N., Aruga J., Takai S., Yamada K., Hamazaki M., Iwase T., Sugimura H., and Mikoshiba K. Predominant expression of human zic in cerebellar granule cell lineage and medulloblastoma. Cancer Res. 56 (1996) 377-383
14. Nieuwenhuis E., and Hui C.-C. Hedgehog signaling and congenital malformations. Clin. Genet. 67 (2004) 193-208
15. Matise M.P., and Joyner A.L. Gli genes in development and cancer. Oncogene 18 (1999) 7852-7859
16. Lee J., Platt K.A., Censullo P., and Ruiz i Altaba A. Gli1 is a target of Sonic hedgehog that induces ventral neural tube development. Development 124 (1997) 2537-2552
17. Matise M.P., Epstein D.J., Park H.L., Platt K.A., and Joyner A.L. Gli2 is required for induction of floor plate and adjacent cells, but not most ventral neurons in the mouse central nervous system. Development 125 (1998) 2759-2770
18. Lamar E., Kintner C., and Goulding M. Identification of NKL, a novel Gli-Kruppel zinc-finger protein that promotes neuronal differentiation. Development 128 (2001) 1335-1346
19. Párraga G., Horvath S.J., Eisen A., Taylor W.E., Hood L., Young E.T., and Klevit R.E. Zinc-dependent structure of a single-finger domain of yeast ADR1. Science 241 (1988) 1489-1492
20. Lee M.S., Gippert G.P., Soman K.V., Case D.A., and Wright P.E. Three-dimensional solution structure of a single zinc finger DNA-binding domain. Science 245 (1989) 635-637
21. Pavletich N.P., and Pabo C.O. Zinc finger-DNA recognition: crystal structure of Zif268-DNA complex at 2.1Å. Science 252 (1991) 809-817
22. Pavletich N.P., and Pabo C.O. Crystal structure of a five-finger GLI-DNA complex: New perspectives on zinc fingers. Science 261 (1993) 1701-1707
23. Reed J., and Reed T.A. A set of constructed type spectra for the practical estimation of peptide secondary structure from circular dichroism. Anal. Biochem. 254 (1997) 36-40
24. Schuh R., Aicher W., Gaul U., Cote S., Preiss A., Maier D., Seifert E., Nauber E.U., Schroder C., Kemler R., and Jäckle H. A conserved family of nuclear proteins containing structural elements of the finger protein encoded by Krüppel, a Drosophila segmentation gene. Cell 47 (1986) 1025-1032
25. Mizugishi K., Aruga J., Nakata K., and Mikoshiba K. Molecular properties of Zic proteins as transcriptional regulators and their relationship to GLI proteins. J. Biol. Chem. 276 (2001) 2180-2188
26. Frankel A.D., Berg J.M., and Pabo C.O. Metal-dependent folding of a single zinc finger from transcription factor IIIA. Proc. Natl. Acad. Sci. U. S. A. 84 (1987) 4841-4845
27. Kim C.A., and Berg J.M. Thermodynamic β-sheet properties measured using a zinc-finger host peptide. Nature 36 (1993) 267-270
28. Patel L., Abate C., and Curran T. Altered protein conformation on DNA binding by Fos and Jun. Nature 347 (1990) 572-575
29. Weiss M.A., Ellenberger T., Wobbe C.R., Lee J.P., Harrison S.C., and Struhl K. Folding transition in the DNA-binding domain of GCN4 on specific binding to DNA. Nature 347 (1990) 575-578
30. Tan R., Chen L., Buettner J.A., Hudson D., and Frankel A.D. RNA recognition by an isolated α-helix. Cell 73 (1993) 1031-1040
31. Desjarlais J.R., and Berg J.M. Toward rules relating zinc finger protein sequences and DNA binding site preferences. Proc. Natl. Acad. U. S. A. 89 (1992) 7345-7349
32. Segal D.J., Dreier B., Beerli R.R., and Barbas III C.F. Toward controlling gene expression at will: selection and design of zinc finger domains recognizing each of the 5′-GNN-3′ DNA target sequences. Proc. Natl. Acad. U. S. A. 96 (1999) 2758-2763
33. Zhang F., Nakanishi G., Kurebayashi S., Yoshino K., Perantoni A., Kim Y.-S., and Jetten A.M. Characterization of Glis2, a novel gene encoding a Gli-related, Krüppel-like transcription factor with transactivation and repressor functions. Roles in kidney development and neurogenesis. J. Biol. Chem. 277 (2002) 10139-10149
34. Kim Y.-S., Nakanishi G., Lewandoski M., and Jetten A.M. GLIS3, a novel member of the GLIS subfamily of Krüppel-like zinc finger proteins with repressor and activation functions. Nucleic Acids Res. 31 (2003) 5513-5525
35. Feledy J.A., Morasso M.I., Jang S.-I., and Sargent T.D. Transcriptional activation by the homeodomain proteins distal-less3. Nucleic Acids Res. 27 (1999) 764-770
36. Corsetti M.T., Briata P., Sanseverino L., Daga A., Airoldi I., Simeone A., Palmisano G., Angelini C., Boncinelli E., and Corte G. Differential DNA binding properties of three human homeodomain proteins. Nucleic Acids Res. 20 (1992) 4465-4472
37. Klevit R.E., Herriott J.R., and Horvath S.J. Solution structure of a zinc finger domain of yeast ADR1. Proteins 7 (1990) 215-226
38. Omichinski J.G., Clore G.M., Appella E., Sakaguchi K., and Gronenborn A.M. High-resolution three-dimensional structure of a single zinc finger from a human enhancer binding protein in solution. Biochemistry 29 (1990) 9324-9334