메뉴 건너뛰기




Volumn 40, Issue 3, 2008, Pages 447-455

Quantification of Pythium populations in ginseng soils by culture dependent and real-time PCR methods

Author keywords

Cryptic species; Dilution plating; rDNA sequences; Soil pathogen populations

Indexed keywords

PANAX GINSENG; PANAX QUINQUEFOLIUS; PYTHIUM; PYTHIUM IRREGULARE; PYTHIUM ULTIMUM;

EID: 52149096471     PISSN: 09291393     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.apsoil.2008.06.011     Document Type: Article
Times cited : (20)

References (38)
  • 1
    • 52149087796 scopus 로고    scopus 로고
    • Agriculture and Agri-Food Canada, 2003. Ginseng Statistics. http://www.agr.gc.ca/misb/spcrops/sc-cs_e.php?section=stats&page=ginseng.
    • Agriculture and Agri-Food Canada, 2003. Ginseng Statistics. http://www.agr.gc.ca/misb/spcrops/sc-cs_e.php?section=stats&page=ginseng.
  • 2
    • 0041528199 scopus 로고    scopus 로고
    • Detection and quantification of Plectosphaerella cucumerina, a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media, and baiting
    • Atkins S.D., Clark I.M., Sosnowska D., Hirsch P.R., and Kerry B.R. Detection and quantification of Plectosphaerella cucumerina, a potential biological control agent of potato cyst nematodes, by using conventional PCR, real-time PCR, selective media, and baiting. Appl. Environ. Microbiol. 69 (2003) 4788-4793
    • (2003) Appl. Environ. Microbiol. , vol.69 , pp. 4788-4793
    • Atkins, S.D.1    Clark, I.M.2    Sosnowska, D.3    Hirsch, P.R.4    Kerry, B.R.5
  • 4
    • 28044436045 scopus 로고    scopus 로고
    • Amplified fragment length polymorphism analysis and internal transcribed spacer and coxII sequences reveal a species boundary within Pythium irregulare
    • Garzón C.D., Geiser D.M., and Moorman G.W. Amplified fragment length polymorphism analysis and internal transcribed spacer and coxII sequences reveal a species boundary within Pythium irregulare. Phytopathology 95 (2005) 1489-1498
    • (2005) Phytopathology , vol.95 , pp. 1489-1498
    • Garzón, C.D.1    Geiser, D.M.2    Moorman, G.W.3
  • 5
    • 34547172731 scopus 로고    scopus 로고
    • Pythium cryptoirregulare, a new species within the P. irregulare complex
    • Garzón C.D., Yánezand J.M., and Moorman G.W. Pythium cryptoirregulare, a new species within the P. irregulare complex. Mycologia 99 (2007) 291-301
    • (2007) Mycologia , vol.99 , pp. 291-301
    • Garzón, C.D.1    Yánezand, J.M.2    Moorman, G.W.3
  • 6
    • 0036278859 scopus 로고    scopus 로고
    • Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream
    • Ginzinger D.G. Gene quantification using real-time quantitative PCR: an emerging technology hits the mainstream. Exp. Hematol. 30 (2002) 503-512
    • (2002) Exp. Hematol. , vol.30 , pp. 503-512
    • Ginzinger, D.G.1
  • 7
    • 0002051540 scopus 로고    scopus 로고
    • BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT
    • Hall T.A. BioEdit: a user-friendly biological sequence alignment editor and analysis program for Windows 95/98/NT. Nucl. Acids Symp. Ser. 41 (1999) 95-98
    • (1999) Nucl. Acids Symp. Ser. , vol.41 , pp. 95-98
    • Hall, T.A.1
  • 8
    • 52149086435 scopus 로고    scopus 로고
    • Howard, R.J., Garland, J.A., Seaman, W.L., 1994. Diseases and Pests of Vegetable Crops in Canada. Canadian Phytopathological Society and Entomological Society of Canada, Ottawa, Ontario, 554 pp.
    • Howard, R.J., Garland, J.A., Seaman, W.L., 1994. Diseases and Pests of Vegetable Crops in Canada. Canadian Phytopathological Society and Entomological Society of Canada, Ottawa, Ontario, 554 pp.
  • 9
    • 8744297171 scopus 로고    scopus 로고
    • Real-time detection of Phytophthora nicotianae and P. citrophthorain citrus roots and soil
    • Ippolito A., Schena L., Nigro F., Ligorio V.S., and Yaseen T. Real-time detection of Phytophthora nicotianae and P. citrophthorain citrus roots and soil. Eur. J. Plant Pathol. 110 (2004) 833-843
    • (2004) Eur. J. Plant Pathol. , vol.110 , pp. 833-843
    • Ippolito, A.1    Schena, L.2    Nigro, F.3    Ligorio, V.S.4    Yaseen, T.5
  • 10
    • 0000615128 scopus 로고
    • Comparison of two media selective for Phytophthora and Pythium species
    • Jeffers S.N., and Martin S.B. Comparison of two media selective for Phytophthora and Pythium species. Plant Dis. 70 (1986) 1038-1043
    • (1986) Plant Dis. , vol.70 , pp. 1038-1043
    • Jeffers, S.N.1    Martin, S.B.2
  • 11
    • 0030769579 scopus 로고    scopus 로고
    • Detection of Pythium ultimum using polymerase chain reaction with species-specific primers
    • Kageyama K., Ohyama A., and Hyakumachi M. Detection of Pythium ultimum using polymerase chain reaction with species-specific primers. Plant Dis. 81 (1997) 1155-1160
    • (1997) Plant Dis. , vol.81 , pp. 1155-1160
    • Kageyama, K.1    Ohyama, A.2    Hyakumachi, M.3
  • 12
    • 34249650217 scopus 로고    scopus 로고
    • Intra-isolate heterogeneity of the ITS region of rDNA in Pythium helicoides
    • Kageyama K., Senda M., Asano T., Suga H., and Ishiguro K. Intra-isolate heterogeneity of the ITS region of rDNA in Pythium helicoides. Mycol. Res. 111 (2007) 416-423
    • (2007) Mycol. Res. , vol.111 , pp. 416-423
    • Kageyama, K.1    Senda, M.2    Asano, T.3    Suga, H.4    Ishiguro, K.5
  • 13
    • 34248390885 scopus 로고    scopus 로고
    • Quantification of Cylindrocarpon destructans f.sp. panacis in soils by real-time PCR
    • Kernaghan G., Hoke S.M., and Reeleder R. Quantification of Cylindrocarpon destructans f.sp. panacis in soils by real-time PCR. Plant Pathol. 56 (2007) 508-516
    • (2007) Plant Pathol. , vol.56 , pp. 508-516
    • Kernaghan, G.1    Hoke, S.M.2    Reeleder, R.3
  • 15
    • 33646718553 scopus 로고    scopus 로고
    • Real-time PCR for detection and quantification of fungal and oomycete tomato pathogens in plant and soil samples
    • Lievens B., Brouwer M., Vanachter A.C.R.C., Cammue B.P.A., and Thomma B.P.H.J. Real-time PCR for detection and quantification of fungal and oomycete tomato pathogens in plant and soil samples. Plant Sci. 171 (2006) 155-165
    • (2006) Plant Sci. , vol.171 , pp. 155-165
    • Lievens, B.1    Brouwer, M.2    Vanachter, A.C.R.C.3    Cammue, B.P.A.4    Thomma, B.P.H.J.5
  • 16
    • 0034486812 scopus 로고    scopus 로고
    • Intraspecific DNA polymorphisms of Pythium irregulare
    • Matsumoto C., Kageyama K., Suga H., and Hyakumachi M. Intraspecific DNA polymorphisms of Pythium irregulare. Mycol. Res. 104 (2000) 1333-1341
    • (2000) Mycol. Res. , vol.104 , pp. 1333-1341
    • Matsumoto, C.1    Kageyama, K.2    Suga, H.3    Hyakumachi, M.4
  • 17
  • 18
    • 29644443436 scopus 로고    scopus 로고
    • Real-time polymerase chain reaction: applications to studies on soilborne pathogens
    • Okubara P.A., Schroeder K.L., and Paulitz T.C. Real-time polymerase chain reaction: applications to studies on soilborne pathogens. Can. J. Plant Pathol. 27 (2005) 300-313
    • (2005) Can. J. Plant Pathol. , vol.27 , pp. 300-313
    • Okubara, P.A.1    Schroeder, K.L.2    Paulitz, T.C.3
  • 19
    • 52149109808 scopus 로고    scopus 로고
    • Ontario Ministry of Agriculture, Food and Rural Affairs, 2005. Publication 610, Production Recommendations for Ginseng. Queen's Printer for Ontario, Toronto, ON, 88 pp.
    • Ontario Ministry of Agriculture, Food and Rural Affairs, 2005. Publication 610, Production Recommendations for Ginseng. Queen's Printer for Ontario, Toronto, ON, 88 pp.
  • 20
    • 27544470322 scopus 로고    scopus 로고
    • Efficacy of an extract of North American ginseng containing poly-furanosyl-pyranosyl-saccharides for preventing upper respiratory tract infections: a randomized controlled trial
    • Predy G.N., Goel V., Lovlin R., Donner A., Stitt L., and Basu T.K. Efficacy of an extract of North American ginseng containing poly-furanosyl-pyranosyl-saccharides for preventing upper respiratory tract infections: a randomized controlled trial. Can. Med. Assoc. J. 173 (2005) 1043-1048
    • (2005) Can. Med. Assoc. J. , vol.173 , pp. 1043-1048
    • Predy, G.N.1    Goel, V.2    Lovlin, R.3    Donner, A.4    Stitt, L.5    Basu, T.K.6
  • 21
    • 0037435395 scopus 로고    scopus 로고
    • Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data
    • Ramakers C., Ruijter J.M., Lekanne Deprez R.H., and Moorman A.F.M. Assumption-free analysis of quantitative real-time polymerase chain reaction (PCR) data. Neurosci. Lett. 339 (2003) 62-66
    • (2003) Neurosci. Lett. , vol.339 , pp. 62-66
    • Ramakers, C.1    Ruijter, J.M.2    Lekanne Deprez, R.H.3    Moorman, A.F.M.4
  • 22
    • 78651416818 scopus 로고
    • Pathogenicity of Pythium species, Cylindrocarpon destructans, and Rhizoctonia solani to ginseng seedlings in Ontario
    • Reeleder R.D., and Brammall R.A. Pathogenicity of Pythium species, Cylindrocarpon destructans, and Rhizoctonia solani to ginseng seedlings in Ontario. Can. J. Plant Pathol. 16 (1994) 311-316
    • (1994) Can. J. Plant Pathol. , vol.16 , pp. 311-316
    • Reeleder, R.D.1    Brammall, R.A.2
  • 23
    • 42249110564 scopus 로고    scopus 로고
    • Mefenoxam sensitivity and the impact of fumigation on Pythium species and Phytophthora cactorum in ginseng soils
    • Reeleder R.D., Capell B., Miller J.J., and Schooley J. Mefenoxam sensitivity and the impact of fumigation on Pythium species and Phytophthora cactorum in ginseng soils. Can. J. Plant Pathol. 29 (2007) 427-436
    • (2007) Can. J. Plant Pathol. , vol.29 , pp. 427-436
    • Reeleder, R.D.1    Capell, B.2    Miller, J.J.3    Schooley, J.4
  • 24
    • 33750314090 scopus 로고    scopus 로고
    • Rusted root of ginseng (Panax quinquefolius) is caused by a species of Rhexocercosporidium
    • Reeleder R.D., Hoke S.M.T., and Zhang Y. Rusted root of ginseng (Panax quinquefolius) is caused by a species of Rhexocercosporidium. Phytopathology 96 (2006) 1243-1254
    • (2006) Phytopathology , vol.96 , pp. 1243-1254
    • Reeleder, R.D.1    Hoke, S.M.T.2    Zhang, Y.3
  • 25
    • 33745980437 scopus 로고    scopus 로고
    • Impacts of tillage, cover crop, and nitrogen on populations of earthworms, microarthropods, and soil fungi in a cultivated fragile soil
    • Reeleder R.D., Miller J.J., Ball Coelho B.R., and Roy R.C. Impacts of tillage, cover crop, and nitrogen on populations of earthworms, microarthropods, and soil fungi in a cultivated fragile soil. Appl. Soil Ecol. 33 (2006) 243-257
    • (2006) Appl. Soil Ecol. , vol.33 , pp. 243-257
    • Reeleder, R.D.1    Miller, J.J.2    Ball Coelho, B.R.3    Roy, R.C.4
  • 26
    • 0038321310 scopus 로고    scopus 로고
    • Seed and root rots of ginseng (Panax quinquefolius) caused by Cylindrocarpon destructans and Fusarium spp
    • Reeleder R.D., Roy R., and Capell B. Seed and root rots of ginseng (Panax quinquefolius) caused by Cylindrocarpon destructans and Fusarium spp. J. Ginseng Res. 26 (2002) 151-158
    • (2002) J. Ginseng Res. , vol.26 , pp. 151-158
    • Reeleder, R.D.1    Roy, R.2    Capell, B.3
  • 27
    • 0036759015 scopus 로고    scopus 로고
    • Real-time PCR and its application for rapid plant disease diagnostics
    • Schaad N.W., and Frederick R.D. Real-time PCR and its application for rapid plant disease diagnostics. Can. J. Plant Pathol. 24 (2002) 250-258
    • (2002) Can. J. Plant Pathol. , vol.24 , pp. 250-258
    • Schaad, N.W.1    Frederick, R.D.2
  • 28
    • 8744263850 scopus 로고    scopus 로고
    • Real-time quantitative PCR: a new technology to detect and study phytopathogenic and antagonistic fungi
    • Schena L., Nigro F., Ippolito A., and Gallitelli D. Real-time quantitative PCR: a new technology to detect and study phytopathogenic and antagonistic fungi. Eur. J. Plant Pathol. 110 (2004) 893-908
    • (2004) Eur. J. Plant Pathol. , vol.110 , pp. 893-908
    • Schena, L.1    Nigro, F.2    Ippolito, A.3    Gallitelli, D.4
  • 29
    • 33744734019 scopus 로고    scopus 로고
    • Identification and quantification of pathogenic Pythium spp. from soils in eastern Washington using real-time polymerase chain reaction
    • Schroeder K.L., Okubara P.A., Tambong J.T., Lévesque C.A., and Paulitz T.C. Identification and quantification of pathogenic Pythium spp. from soils in eastern Washington using real-time polymerase chain reaction. Phytopathology 96 (2006) 637-647
    • (2006) Phytopathology , vol.96 , pp. 637-647
    • Schroeder, K.L.1    Okubara, P.A.2    Tambong, J.T.3    Lévesque, C.A.4    Paulitz, T.C.5
  • 30
    • 0027981314 scopus 로고
    • Thermal denaturation of double-stranded nucleic acids: prediction of temperatures critical for gradient gel electrophoresis and polymerase chain reaction
    • Steger G. Thermal denaturation of double-stranded nucleic acids: prediction of temperatures critical for gradient gel electrophoresis and polymerase chain reaction. Nucleic Acids Res. 22 (1994) 2760-2768
    • (1994) Nucleic Acids Res. , vol.22 , pp. 2760-2768
    • Steger, G.1
  • 32
    • 0031574072 scopus 로고    scopus 로고
    • The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools
    • Thompson J.D., Gibson T.J., Plewniak F., Jeanmougin F., and Higgins D.G. The Clustal X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res. 24 (1997) 4876-4882
    • (1997) Nucleic Acids Res. , vol.24 , pp. 4876-4882
    • Thompson, J.D.1    Gibson, T.J.2    Plewniak, F.3    Jeanmougin, F.4    Higgins, D.G.5
  • 33
    • 0035016444 scopus 로고    scopus 로고
    • Application of fibre-FISH (fluorescence in situ hybridization) to filamentous fungi: visualization of the rRNA gene cluster of the ascomycete Cochliobolus heterostrophus
    • Tsuchiya D., and Taga M. Application of fibre-FISH (fluorescence in situ hybridization) to filamentous fungi: visualization of the rRNA gene cluster of the ascomycete Cochliobolus heterostrophus. Microbiology 147 (2001) 1183-1187
    • (2001) Microbiology , vol.147 , pp. 1183-1187
    • Tsuchiya, D.1    Taga, M.2
  • 35
    • 0042769329 scopus 로고    scopus 로고
    • Species-specific PCR primers for Pythium developed from ribosomal ITS1 region
    • Wang P.H., Wang Y.T., and White J.G. Species-specific PCR primers for Pythium developed from ribosomal ITS1 region. Lett. Appl. Microbiol. 37 (2003) 127-132
    • (2003) Lett. Appl. Microbiol. , vol.37 , pp. 127-132
    • Wang, P.H.1    Wang, Y.T.2    White, J.G.3
  • 36
    • 52149124451 scopus 로고    scopus 로고
    • Waterhouse, G.M., 1967. Key to Pythium Pringsheim, Mycological Papers No. 109. Kew, Surrey, England: Commonwealth Mycological Institute.
    • Waterhouse, G.M., 1967. Key to Pythium Pringsheim, Mycological Papers No. 109. Kew, Surrey, England: Commonwealth Mycological Institute.
  • 37
    • 0000432452 scopus 로고
    • Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics
    • Innis M.A., Gelfand D.H., Sninsky J.J., and White T.J. (Eds), Academic Press, New York
    • White T.J., Bruns T., Lee S., and Taylor J. Amplification and direct sequencing of fungal ribosomal RNA genes for phylogenetics. In: Innis M.A., Gelfand D.H., Sninsky J.J., and White T.J. (Eds). PCR Protocols: A Guide to Methods and Applications (1990), Academic Press, New York 315-322
    • (1990) PCR Protocols: A Guide to Methods and Applications , pp. 315-322
    • White, T.J.1    Bruns, T.2    Lee, S.3    Taylor, J.4
  • 38
    • 0031657889 scopus 로고    scopus 로고
    • A sensitive ELISA for Pythium ultimum using polyclonal and species-specific monoclonal antibodies
    • Yuen G.Y., Xia J.Q., and Sutula C.L. A sensitive ELISA for Pythium ultimum using polyclonal and species-specific monoclonal antibodies. Plant Dis. 82 (1998) 1029-1032
    • (1998) Plant Dis. , vol.82 , pp. 1029-1032
    • Yuen, G.Y.1    Xia, J.Q.2    Sutula, C.L.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.