Genetic diversity of Spiroplasma citri strains from different regions, hosts, and isolation dates

Phytopathology

Volumn 98, Issue 9, 2008, Pages 960-968

  Mello, A F S ^a   Yokomi, R K ^b   Melcher, U ^a   Chen, J C ^b   Wayadande, A C ^a   Fletcher, J ^a  

^a OKLAHOMA STATE UNIVERSITY   (United States)

^b AGRICULTURAL RESEARCH SERVICE   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ARTICLE; BACTERIAL GENOME; CLASSIFICATION; GENETIC VARIABILITY; GENETICS; GEOGRAPHY; GROWTH, DEVELOPMENT AND AGING; ISOLATION AND PURIFICATION; MIDDLE EAST; PHYLOGENY; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA; SPIROPLASMA CITRI; UNITED STATES;

CALIFORNIA; GENETIC VARIATION; GENOME, BACTERIAL; GEOGRAPHY; MIDDLE EAST; PHYLOGENY; POLYMERASE CHAIN REACTION; RANDOM AMPLIFIED POLYMORPHIC DNA TECHNIQUE; SPIROPLASMA CITRI; UNITED STATES;

CITRUS; DAUCUS CAROTA; RAPHANUS SATIVUS; RAPHANUS SATIVUS VAR. NIGER; SPIROPLASMA CITRI;

EID: 51849099993     PISSN: 0031949X     EISSN: None     Source Type: Journal    
DOI: 10.1094/PHYTO-98-9-0960     Document Type: Article

References (41)

1. Altschul, S. F., Gish, W., Miller, W., Myers, E. W., and Lipman, D. J. 1990. Basic local alignment search tool. J. Mol. Biol. 215:403-410.
2. Bové, J. M., Whitcomb, R. F., and McCoy, R. E. 1983. Culture techniques for spiroplasmas from plants. Pages 225-234 in: Methods in Mycoplasmology. J. G. Tully and S. Razin, eds. Academic Press, Inc., New York.
3. Calavan, E. C., and Bové, J. M. 1989. Ecology of Spiroplasma citri. Pages 425-485 in: The Mycoplasmas. R. F. Whitcomb and J. G. Tully, eds. Academic Press, Inc., New York.
4. Calavan, E. C., and Oldfield, G. N. 1979. Symptomatology of spiroplasmal plant diseases. Pages 37-64 in: The Mycoplasmas. R. F. Whitcomb and J. G. Tully, eds. Academic Press, Inc., New York.
5. Clark, T. B., Whitcomb, R. F., Tully, J. G., Mouches, C., Saillard, C., Bové, J. M., Wroblewski, H., Carle, P., Rose, D. L., Henegar, R. B., and Williamson, D. L. 1985. Spiroplasma melliferum, a new species from the honeybee (Apis mellifera). Int. J. Syst. Bacteriol. 35:296-308.
6. Davis, R. E. 1978. Spiroplasma associated with flowers of the tulip tree (Liriodendron tulipifera L.). Can. J. Microbiol. 24:954-959.
7. Davis, R. E., and Fletcher, J. 1983. Spiroplasma citri in Maryland: Isolation from field-grown plants of horseradish (Armoracia rusticana) with brittle root symptoms. Plant Dis. 67:900-903.
8. Deeley, J., Stevens, W. A., and Fox, R. T. V. 1979. Use of Dienes' stain to detect plant diseases induced by mycoplasmalike organisms. Phytopathology 69:1169-1171.
9. Doyle, J. J., and Doyle, J. L. 1987. A rapid DNA isolation procedure for small quantities of fresh leaf tissue. Phytochemical Bull. 19:11-15.
10. Fawcett, H. S. 1946. Stubborn disease of citrus, a virosis. Phytopathology 36:675-677.
11. Felsenstein, J. 1989. PHYLIP - Phylogeny Inference Package (Version 3.2). Cladistics 5:164-166.
12. Fletcher, J. 1983. Brittle root of horseradish in Illinois and the distribution of Spiroplasma citri in the United States. Phytopathology 73:354-357.
13. Fletcher, J., Schultz, G. A., Davis, R. E., Eastman, C. E., and Goodman, R. M. 1981. Brittle root disease of horseradish: Evidence for an etiological role of Spiroplasma citri. Phytopathology 71:1073-1080.
14. Fletcher, J., Shaw, M. E., Baker, G. R., Dugan, K. J., Ye, F., Sha, Y., Zuck, P. D., and Myers, G. D. 1996. Molecular characterization of Spiroplasma citri BR3 lines that differ in transmissibility by the leafhopper Circulifer tenellus. Can. J. Microbiol. 42:124-131.
15. Fudl-Allah, A. E.-S. A., Calavan, E. C., and Igwegbe, E. C. K. A. 1972. Culture of a mycoplasmalike organism associated with stubborn disease of citrus. Phytopathology 62:729-731.
16. Gumpf, D. G., and Calavan, E. C. 1981. Stubborn disease of citrus. Pages 97-134 in: Mycoplasma Diseases of Trees and Shrubs. K. Maramorosch and S. P. Raychaudhuri, eds. Academic Press, Inc., New York.
17. Jacob, C., Nouzieres, F., Duret, S., Bové, J. M., and Renaudin, J. 1997. Isolation, characterization, and complementation of a motility mutant of Spiroplasma citri. J. Bacteriol. 179:4802-4810.
18. Koeuth, T., Versalovic, J., and Lupski, J. R. 1995. Differential subsequence conservation of interspersed repetitive Streptococcus pneumoniae BOX elements in diverse bacteria. Genome Res. 5:408-418.
19. Lee, I.-M., Bottner, K. D., Munyaneza, J. E., Davis, R. E., Crosslin, J. M., du Toit, L. J., and Crosby, T. 2006. Carrot purple leaf: A new spiroplasmal disease associated with carrots in Washington State. Plant Dis. 90:989-993.
20. Lee, I.-M., and Davis, R. E. 1983. New media for rapid growth of Spiroplasma citri and corn stunt spiroplasma. Phytopathology 74:84-89.
21. Liu, H.-Y., Gumpf, D. J., Oldfield, G. N., and Calavan, E. C. 1983. The relationship of Spiroplasma citri and Circulifer tenellus. Phytopathology 73:585-590.
22. Louws, F. J., Rademaker, J. L. W., and Bruijn, F. J. 1999. The three Ds of PCR-based genomic analysis of phytobacteria: Diversity, detection, and disease diagnosis. Annu. Rev. Phytopathol. 37:81-125.
23. Melcher, U., and Fletcher, J. 1999. Genetic variation in Spiroplasma citri. Eur. J. Plant Pathol. 105:519-533.
24. Mello, A. F. S., Yokomi, R. K., Melcher, U., Chen, J., and Fletcher, J. 2006. Assessment of genetic diversity in Spiroplasma citri by RAPD, rep-PCR and bacteriophage primers. (Abstr.) Phytopathology 96(suppl.):S77.
25. Mutaqin, K. H. 2004. Molecular typing of Spiroplasma species and lines using rep-polymerase chain reaction and transposome mutagenesis and selection of natural non-adherent mutants of Spiroplasma citri. Ph.D. thesis. Oklahoma State University, Stillwater.
26. Neyrolles, O., Chambaud, I., Ferris, S., Prevost, M.-C., Sasaki, T., Montagnier, L., and Blanchard, A. 1999. Phase variations of the Mycoplasma penetrans main surface lipoprotein increase antigenic diversity. Infect. Immun. 67:1569-1578.
27. Oldfield, G. N., Kaloostian, G. H., Pierce, H. D., Calavan, E. C., Granett, A. L., Blue, R. L., Rana, G. L., and Gumpf, D. J. 1977. Transmission of Spiroplasma citri from citrus to citrus by Scaphytopius nitridus. Phytopathology 67:763-765.
28. Page, R. D. M. 1996. TREEVIEW: An application to display phylogenetic trees on personal computers. Comp. Appl. Biosci.12:357-358.
29. Pollack, S. L., Lin, B.-H., and Allshouse, J. 2003. Characteristics of U.S. orange consumption. Pages 1-17 in: Electronic Outlook Report from the Economic Research Service USDA.
30. Qin, X., Miranda, V. S., Machado, M. A., Lemos, E. G. M., and Hartung, J. S. 2001. An evaluation of the genetic diversity of Xylella fastidiosa isolated from diseased citrus and coffee in São Paulo, Brazil. Phytopathology 91:599-605.
31. Saglio, P., L'hospital, M., Lafleche, D., Dupont, G., Bové, J. M., Tully, J. G., and Freundt, E. A. 1973. Spiroplasma citri gen. and sp. n.: A mycoplasma-like organism associated with "stubborn" disease of citrus. Int. J. Syst. Bacteriol. 23:191-204.
32. Sambrook, J., Fritsch, E. F., and Maniatis, T., eds. 1989. Molecular Cloning: A Laboratory Manual. Cold Spring Harbor Laboratory, Cold Spring Harbor, NY.
33. SAS Institute. 2003. The SAS System for Windows. Version 9.1. SAS Institute, Inc., Cary, NC.
34. Sha, Y., Melcher, U., Davis, R. E., and Fletcher, J. 1995. Resistance of Spiroplasma citri lines to the virus SVTS2 is associated with integration of viral DNA sequences into host chromosomal and extrachromosomal DNA. Appl. Environ. Microbiol. 61:3950-3959.
35. Skroch, P., and Nienhuis, J. 1995. Impact of scoring error and reproducibility of RAPD data on RAPD based estimates of genetic distance. Theor. Appl. Genet. 91:1086-1091.
36. Townsend, R., Markham, P. G., Plaskitt, K. A., and Daniels, M. J. 1977. Isolation and characterization of a non-helical strain of Spiroplasma citri. J. Gen. Microbiol. 100:15-21.
37. Tyler, K. D., Wang, G., Tyler, S. D., and Johnson, W. M. 1997. Factors affecting reliability and reproducibility of amplification-based DNA fingerprinting of representative bacterial pathogens. J. Clin. Microbiol. 35:339-346.
38. Wayadande, A. C., and Fletcher, J. 1995. Transmission of Spiroplasma citri lines and their ability to cross gut and salivary gland barriers within the leafhopper vector Circulifer tenellus. Phytopathology 85:1256-1259.
39. Ye, F., Laigret, F., Whitley, J. C., Citti, C., Finch, L. R., Carle, P., Renaudin, J., and Bové, J. M. 1992. A physical and genetic map of the Spiroplasma citri genome. Nucleic Acids Res. 20:1559-1565.
40. Ye, F., Melcher, U., Rascoe, J. E., and Fletcher, J. 1996. Extensive chromosome aberrations in Spiroplasma citri strain BR3. Biochem. Genet. 34:269-286.
41. Yokomi, R. K., Mello, A. F. S., Saponari, M., and Fletcher, J. 2008. PCR-based detection of Spiroplasma citri associated with citrus stubborn disease. Plant Dis. 92:253-260.