-
1
-
-
0003450992
-
-
Nomenclature Committee of the International Union of Biochemistry and Molecular Biology NC-IUBMB, Academic Press, NY
-
Enzyme-Nomenclature, Nomenclature Committee of the International Union of Biochemistry and Molecular Biology (NC-IUBMB), Academic Press, NY (http://www.chem.qmul.ac.uk/iubmb/enzyme/).
-
Enzyme-Nomenclature
-
-
-
2
-
-
0032893084
-
The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999
-
Bairoch, A. and Apweiler, R., "The SWISS-PROT protein sequence data bank and its supplement TrEMBL in 1999," Nucleic Acids Research, vol. 27, pp. 49-54, 1999.
-
(1999)
Nucleic Acids Research
, vol.27
, pp. 49-54
-
-
Bairoch, A.1
Apweiler, R.2
-
3
-
-
13444251475
-
Predicting functional family of novel enzymes irrespective of sequence similarity
-
L.Y. Han, C.Z. Cai, Z.L. Ji, Z.W. Cao, J. Cui, and Y.Z. Chen, "Predicting functional family of novel enzymes irrespective of sequence similarity," Nucleic Acids Research, vol. 32, pp. 6437-6444, 2004.
-
(2004)
Nucleic Acids Research
, vol.32
, pp. 6437-6444
-
-
Han, L.Y.1
Cai, C.Z.2
Ji, Z.L.3
Cao, Z.W.4
Cui, J.5
Chen, Y.Z.6
-
4
-
-
0041736652
-
Protein function classification via support vector machine approach
-
C.Z. Cai, W.L. Wang, L.Z. Sun, and Y.Z. Chen, "Protein function classification via support vector machine approach," Mathematical Biosciences, vol. 185, pp. 111-122, 2003.
-
(2003)
Mathematical Biosciences
, vol.185
, pp. 111-122
-
-
Cai, C.Z.1
Wang, W.L.2
Sun, L.Z.3
Chen, Y.Z.4
-
5
-
-
0030623641
-
Predicting enzyme function from sequence: A systematic appraisal
-
Shah, I. and Hunter, L., "Predicting enzyme function from sequence: a systematic appraisal," In the proceeding of ISMB, pp. 276-283, 1999.
-
(1999)
In the proceeding of ISMB
, pp. 276-283
-
-
Shah, I.1
Hunter, L.2
-
6
-
-
0042235504
-
Automated data-driven discovery of motif-based protein function classifiers
-
Xiangyun Wang, Diane Schroeder, Drena Dobbs, and Vasant Honavar, "Automated data-driven discovery of motif-based protein function classifiers," Information Sciences, vol. 155, pp. 1-18, 2003.
-
(2003)
Information Sciences
, vol.155
, pp. 1-18
-
-
Wang, X.1
Schroeder, D.2
Dobbs, D.3
Honavar, V.4
-
7
-
-
0030801002
-
Gapped BLAST and PSI-BLAST: A new generation of protein database search programs
-
Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman, "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs," Nucleic Acids Research, vol. 35, pp. 3389-3402, 1997.
-
(1997)
Nucleic Acids Research
, vol.35
, pp. 3389-3402
-
-
Altschul, S.F.1
Madden, T.L.2
Schaffer, A.A.3
Zhang, J.4
Zhang, Z.5
Miller, W.6
Lipman, D.J.7
-
9
-
-
0035815113
-
Evolution of Function in Protein Superfamilies, from a Structural Perspective
-
Annabel E. Todd, Christine A. Orengo, and Janet M. Thornton, "Evolution of Function in Protein Superfamilies, from a Structural Perspective," J. Mol. Biol., vol. 307, pp. 1113-1143, 2001.
-
(2001)
J. Mol. Biol
, vol.307
, pp. 1113-1143
-
-
Todd, A.E.1
Orengo, C.A.2
Thornton, J.M.3
-
10
-
-
0034531045
-
Protein Structure Comparison and Structure Patterns
-
Ingvar Eidhammer, Inge Jonassen, and Wilian R. Taylor, "Protein Structure Comparison and Structure Patterns," Journal of Computational Biology, pp. 685-716, 2000.
-
(2000)
Journal of Computational Biology
, pp. 685-716
-
-
Eidhammer, I.1
Jonassen, I.2
Taylor, W.R.3
-
11
-
-
47649109030
-
Enzyme function prediction with interpretable models
-
Umar Syed and Golan Yona, "Enzyme function prediction with interpretable models," Computational Systems Biology, pp. 1-33, 2007.
-
(2007)
Computational Systems Biology
, pp. 1-33
-
-
Syed, U.1
Yona, G.2
-
12
-
-
9644283060
-
-
Paul D. Dobson and Andrew J. Doig, Predicting Enzyme Class from Protein Structure without Alignments, JMB, 345, pp. 187-199, 2005.
-
Paul D. Dobson and Andrew J. Doig, "Predicting Enzyme Class from Protein Structure without Alignments," JMB, vol. 345, pp. 187-199, 2005.
-
-
-
-
13
-
-
4944225083
-
Remote homolgy detection: A motif based approach
-
Asa Ben-Hur and Douglas Brutlag, "Remote homolgy detection: a motif based approach," Bioinformatics, Vol. 19 Suppl. 1, pp. i26-i33, 2003.
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
-
-
Ben-Hur, A.1
Brutlag, D.2
-
14
-
-
33745495992
-
Motif Extraction and Protein Classification
-
Vered Kunik, Zach Solan, Shimon Edelman, Eytan Ruppin, and David Horn, "Motif Extraction and Protein Classification," IEEE Computational Systems Bioinformatics Conference (CSB), 2005.
-
(2005)
IEEE Computational Systems Bioinformatics Conference (CSB)
-
-
Kunik, V.1
Solan, Z.2
Edelman, S.3
Ruppin, E.4
Horn, D.5
-
15
-
-
0038038642
-
Using a mixture of probabilistic decision trees for direct prediction of protein function
-
U. Syed and G. Yona, "Using a mixture of probabilistic decision trees for direct prediction of protein function," RECOMB, pp 289-300, 2003.
-
(2003)
RECOMB
, pp. 289-300
-
-
Syed, U.1
Yona, G.2
-
16
-
-
47649093481
-
-
WILE-VCH, chapter 35, 2007, pp
-
Thomas Lengauer, Bioinformatics-From Genomes Therapies, WILE-VCH, vol. 3, Part 8, chapter 35, 2007, pp. 1297-1314.
-
Bioinformatics-From Genomes Therapies
, vol.3
, Issue.PART 8
, pp. 1297-1314
-
-
Lengauer, T.1
-
17
-
-
0029619259
-
Knowledge-Based Protein Secondary Structure Assignment
-
Dmitrij Frishman and Patrick Argos, "Knowledge-Based Protein Secondary Structure Assignment," Proteins: Structure, Function, and Genetics, vol. 23, pp. 566-579, 1995.
-
(1995)
Proteins: Structure, Function, and Genetics
, vol.23
, pp. 566-579
-
-
Frishman, D.1
Argos, P.2
-
18
-
-
33745561205
-
An Introduction to Variable and Feature Selection
-
Isabelle Guyon, "An Introduction to Variable and Feature Selection," Journal of Machine Learning Research, vol. 3, pp. 1157-1182, 2003.
-
(2003)
Journal of Machine Learning Research
, vol.3
, pp. 1157-1182
-
-
Guyon, I.1
-
19
-
-
51549117259
-
-
J. Ross Quinlan, C4.5: programs for machine learning, San Francisco, Morgan Kaufmann, 1993.
-
J. Ross Quinlan, C4.5: programs for machine learning, San Francisco, Morgan Kaufmann, 1993.
-
-
-
-
20
-
-
68549121111
-
C4.5 and Imbalanced Data sets: Investigating the effect of sampling method, probabilistic estimate, and decision tree structure
-
Nitesh V. Chawla, "C4.5 and Imbalanced Data sets: Investigating the effect of sampling method, probabilistic estimate, and decision tree structure," Workshop on Learning from Imbalanced Datasets II, ICML, 2003.
-
(2003)
Workshop on Learning from Imbalanced Datasets II, ICML
-
-
Chawla, N.V.1
-
21
-
-
0036892449
-
Prediction of novel archaeal enzymes from sequence-derived features
-
Lars Juhl Jensen, Marie Skovgaard, and Soren Brunak, "Prediction of novel archaeal enzymes from sequence-derived features," Protein Science, vol. 3, pp. 2894-2898, 2002.
-
(2002)
Protein Science
, vol.3
, pp. 2894-2898
-
-
Juhl Jensen, L.1
Skovgaard, M.2
Brunak, S.3
-
22
-
-
33749078148
-
-
Luiz C. Borro, Stanley R.M. Oliveira, Michel E.B. Yamagishi, Adaulto L. Mancini, Jose G. Jardine, Ivan Mazoni, Edgard H. dos Santos, Roberto H. Higa, Paula R. Kuser, and Goran Neshich, Predicting enzyme class from protein structure using Bayesian classification, Genetics and Molecular Research, 5, pp. 193-202, 2006.
-
Luiz C. Borro, Stanley R.M. Oliveira, Michel E.B. Yamagishi, Adaulto L. Mancini, Jose G. Jardine, Ivan Mazoni, Edgard H. dos Santos, Roberto H. Higa, Paula R. Kuser, and Goran Neshich, "Predicting enzyme class from protein structure using Bayesian classification," Genetics and Molecular Research, vol. 5, pp. 193-202, 2006.
-
-
-
-
24
-
-
27144505097
-
Protein Identification and Analysis Tools on the ExPASy Server
-
John M. Walker Ed, Humana Press
-
Gasteiger E., Hoogland C., Gattiker A., Duvaud S., Wilkins M.R., Appel R.D., and Bairoch A., Protein Identification and Analysis Tools on the ExPASy Server, John M. Walker Ed., The Proteomics Protocols Handbook, Humana Press, 2005, pp. 571-607.
-
(2005)
The Proteomics Protocols Handbook
, pp. 571-607
-
-
Gasteiger, E.1
Hoogland, C.2
Gattiker, A.3
Duvaud, S.4
Wilkins, M.R.5
Appel, R.D.6
Bairoch, A.7
-
25
-
-
47649089566
-
Classification of Enzyme Function from Protein Sequence based on Feature Representation
-
Bum Ju Lee, Heon Gyu Lee, Jong Yun Lee, and Keun Ho Ryu, "Classification of Enzyme Function from Protein Sequence based on Feature Representation", 7th IEEE International Conference on Bioinformatics and Bioengineering, vol. 2, pp. 741-747, 2007.
-
(2007)
7th IEEE International Conference on Bioinformatics and Bioengineering
, vol.2
, pp. 741-747
-
-
Ju Lee, B.1
Gyu Lee, H.2
Yun Lee, J.3
Ho Ryu, K.4
-
26
-
-
78649264419
-
Introduction to Data Mining
-
Pang-Ning Tan, Michael Steinbach, and Vipin Kumar, "Introduction to Data Mining", Addison Wesley, pp. 163-298, 2006.
-
(2006)
Addison Wesley
, pp. 163-298
-
-
Tan, P.-N.1
Steinbach, M.2
Kumar, V.3
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