Applicability of random cloning method to analyze microbial community in full-scale anaerobic digesters

Journal of Bioscience and Bioengineering

Volumn 106, Issue 2, 2008, Pages 134-140

  Cheon, Jihoon ^a   Hidaka, Taira ^a   Mori, Shuichi ^a   Koshikawa, Hiromoto ^b   Tsuno, Hiroshi ^a  

^a KYOTO UNIVERSITY   (Japan)

^b RYUKOKU UNIVERSITY   (Japan)

Author keywords

16S rDNA; anaerobic digester; full scale; lab scale; microbial community; random cloning; substrate; temperature

Indexed keywords

BACTERIOLOGY; CLONING; SEWAGE;

16S RDNA; ANAEROBIC DIGESTER; FULL-SCALE; LAB-SCALE; MICROBIAL COMMUNITY; RANDOM CLONING; SUBSTRATE; TEMPERATURE;

PULP DIGESTERS;

DNA 16S;

ANAEROBIC DIGESTION; ARTICLE; BACILLUS; CAPROTHERMOBACTER; CLOSTRIDIUM; MESOPHILIC BACTERIUM; MICROBIAL COMMUNITY; MICROBIAL DIVERSITY; MOLECULAR CLONING; NONHUMAN; NUCLEOTIDE SEQUENCE; SLUDGE; THERMOPHILIC BACTERIUM; UNINDEXED SEQUENCE; WASTE;

ANAEROBIOSIS; BACTERIA; BASE SEQUENCE; BIOREACTORS; CLONING, MOLECULAR; DNA PRIMERS; DNA, RIBOSOMAL; POLYMERASE CHAIN REACTION; RNA, RIBOSOMAL, 16S;

BACILLUS SP.; CLOSTRIDIUM SP.; COPROTHERMOBACTER; OTUS; UNIDENTIFIED BACTERIUM;

EID: 51549104658     PISSN: 13891723     EISSN: None     Source Type: Journal    
DOI: 10.1263/jbb.106.134     Document Type: Article

References (24)

1. Speece R.E. Anaerobic biotechnology for industrial wastewaters (1996), Archae Press, Nashville, TN
2. Hong F., Tsuno H., Hidaka T., and Cheon J.H. Study on applicability and operation factor of thermophilic methane fermentation to garbage treatment in high concentration under once-a-day feeding condition. Environ. Eng. Res. 40 (2003) 333-341 (in Japanese)
3. Hong F., Tsuno H., Hidaka T., and Cheon J.H. Study on the performance of thermophilic methane fermentation of garbage under once-a-day feeding conditions. J. Jpn. Soc. Waste Manage. Experts 16 (2004) 381-388 (in Japanese)
4. Haruta S., Nakayama T., Nakamura K., Hemmi H., Ishii M., Igarashi Y., and Nishino T. Microbial diversity in biodegradation and reutilization processes of garbage. J. Biosci. Bioeng. 99 (2005) 1-11
5. Park Y., Hong F., Cheon J., Hidaka T., and Tsuno H. Comparison of thermophilic anaerobic digestion characteristics between single-phase and two-phase systems for kitchen garbage treatment. J. Biosci. Bioeng. 105 (2008) 48-54
6. Raskin L., Stromley J.M., Rittmann B.E., and Stahl D.A. Group-specific 16S rRNA hybridization probes to describe natural communities of methanogens. Appl. Environ. Microbiol. 60 (1994) 1232-1240
7. Griffin M.E., McMahon K.D., Mackie R.I., and Raskin L. Methanogenic population dynamics during start-up of anaerobic digesters treating municipal solid waste and biosolids. Biotechnol. Bioeng. 57 (1998) 342-355
8. Sekiguchi Y., Kamagata Y., Syutsubo K., Ohashi A., Harada H., and Nakamura K. Phylogenetic diversity of mesophilic and thermophilic granular sludges determined by 16S rRNA gene analysis. Microbiology 144 (1998) 2655-2666
9. Santegoeds C.M., Damgaard L.R., Hesselink G., Zopfi J., Lens P., Muyzer G., and de Beer D. Distribution of sulfate-reducing and methanogenic bacteria in anaerobic aggregates determined by micro-sensor and molecular analysis. Appl. Environ. Microbiol. 65 (1999) 4618-4629
10. Whitehead T.R., and Cotta M.A. Phylogenetic diversity of methanogenic archaea in swine waste storage pits. FEMS Microbiol. Lett. 179 (1999) 223-226
11. Tang Y.Q., Fujimura Y., Shigematsu T., Morimura S., and Kida K. Anaerobic treatment performance and microbial population of thermophilic upflow anaerobic filter reactor treating awamori distillery wastewater. J. Biosci. Bioeng. 104 (2007) 281-287
12. Leven L., Eriksson A.R.B., and Schnurer A. Effect of process temperature on bacterial and archaeal communities in two methanogenic bioreactors treating organic household waste. FEMS Microbiol. Ecol. 59 (2007) 683-693
13. Kobayashi T., Li Y.Y., and Harada H. Change of microbial community structure in the mesophilic and thermophilic anaerobic digestion of centrifuged waste activated sludge. J. Jpn. Sewage Works Assoc. 542 (2007) 135-148 (in Japanese)
14. Lane D.J. 16S/23S rRNA sequencing. In: Stackebrandt E., and Goodfellow M. (Eds). Nucleic acid techniques in bacterial sytstematics (1991), John Wiley & Sons, New York 115-175
15. Maidak B.L., Olsen G.J., Larsen N., Overbeek R., McCaughey M.J., and Woese C.R. The RDP (Ribosomal Database Project). Nucleic Acids Res. 25 (1997) 109-111
16. Altschul S.F., Gish W., Miller W., Myers E.W., and Lipman D.J. Basic local alignment search tool. J. Mol. Biol. 215 (1990) 403-410
17. Yu Y., Breitbart M., McNairnie P., and Rohwer F. A web-based bioinformatics platform for analyses of large 16S rDNA libraries. BMC Bioinformatics 7 (2006) 57
18. Thompson J.D., Higgins D.G., and Gibson T.J. CLUSTAL W: improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22 (1994) 4673-4680
19. Tamura K., Dudley J., Nei M., and Kumar S. MEGA4: Molecular evolutionary genetics analysis (MEGA) software version 4.0. Mol. Biol. Evol. 24 (2007) 1596-1599
20. Ma K., Liu X., and Dong X. Methanobacterium beijingense sp. nov., a novel methanogens isolated from anaerobic digesters. Int. J. Syst. Evol. Microbiol. 55 (2005) 325-329
21. Shigematsu T., Tang Y., Kawaguchi H., Ninomiya K., Kijima J., Kobayashi T., Morimura S., and Kida K. Effect of dilution rate on structure of a mesophilic acetate-degrading methanogenic community during continuous cultivation. J. Biosci. Bioeng. 96 (2003) 547-558
22. Tang Y., Shigematsu T., Ikbal, Morimura S., and Kida K. The effects of micro-aeration on the phylogenetic diversity of microorganisms in a thermophilic anaerobic municipal solid-waste digester. Water Res. 38 (2004) 2537-2550
23. Sprenger W.W., van Belzen M.C., Rosenberg J., Hackstein J.H.P., and Keltjens J.T. Methanomicrococcus blatticola gen. nov., sp. nov., a methanol- and methylamine-reducing methanogen from the hindgut of the cockroach Periplaneta Americana. Int. J. Syst. Evol. Microbiol. 50 (2000) 1989-1999
24. Cheon J.H., Hidaka T., Hong F., Koshikawa H., Iwasaki D., and Tsuno H. Microbial community analysis in thermophilic methane fermenters of kitchen waste. Environ. Eng. Res. 44 (2007) 625-632 (in Japanese).