-
1
-
-
0029947261
-
STAB-SD: A Shine-Dalgarno sequence in the 5′ untranslated region is a determinant of mRNA stability
-
Agaisse, H., and D. Lereclus. 1996. STAB-SD: a Shine-Dalgarno sequence in the 5′ untranslated region is a determinant of mRNA stability. Mol. Microbiol. 20:633-643.
-
(1996)
Mol. Microbiol
, vol.20
, pp. 633-643
-
-
Agaisse, H.1
Lereclus, D.2
-
2
-
-
0025369028
-
Control of replication of plasmid R1: The duplex between the antisense RNA, CopA, and its target, CopT, is processed specifically in vivo and in vitro by RNase III
-
Blomberg, P., E. G. H. Wagner, and K. Nordstrom. 1990. Control of replication of plasmid R1: the duplex between the antisense RNA, CopA, and its target, CopT, is processed specifically in vivo and in vitro by RNase III. EMBO J. 9:2331-2340.
-
(1990)
EMBO J
, vol.9
, pp. 2331-2340
-
-
Blomberg, P.1
Wagner, E.G.H.2
Nordstrom, K.3
-
3
-
-
34247099372
-
Regulatory mechanisms employed by cis-encoded antisense RNAs
-
Brantl, S. 2007. Regulatory mechanisms employed by cis-encoded antisense RNAs. Curr. Opin. Microbiol. 10:102-109.
-
(2007)
Curr. Opin. Microbiol
, vol.10
, pp. 102-109
-
-
Brantl, S.1
-
4
-
-
0028846649
-
Stabilized secondary structure at a ribosomal binding site enhances translational repression in E. coli
-
Brunei, C., P. Romby, C. Sacerdot, M. de Smit, M. Graffe, J. Dondon, J. van Duin, B. Ehresmann, C. Ehresmann, and M. Springer. 1995. Stabilized secondary structure at a ribosomal binding site enhances translational repression in E. coli. J. Mol. Biol. 253:277-290.
-
(1995)
J. Mol. Biol
, vol.253
, pp. 277-290
-
-
Brunei, C.1
Romby, P.2
Sacerdot, C.3
de Smit, M.4
Graffe, M.5
Dondon, J.6
van Duin, J.7
Ehresmann, B.8
Ehresmann, C.9
Springer, M.10
-
5
-
-
0025278320
-
The IS10 transposase mRNA is destabilized during antisense RNA control
-
Case, C. C., E. L. Simons, and R. W. Simons. 1990. The IS10 transposase mRNA is destabilized during antisense RNA control. EMBO J. 9:1259-1266.
-
(1990)
EMBO J
, vol.9
, pp. 1259-1266
-
-
Case, C.C.1
Simons, E.L.2
Simons, R.W.3
-
6
-
-
51549095931
-
-
Cormack, B. 2000. Mutagenesis of cloned DNA, p. 8.0.1-8.5.10. In F. M. Ausebel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Current protocols in molecular biology. John Wiley & Sons, Inc., New York, NY.
-
Cormack, B. 2000. Mutagenesis of cloned DNA, p. 8.0.1-8.5.10. In F. M. Ausebel, R. Brent, R. E. Kingston, D. D. Moore, J. G. Seidman, J. A. Smith, and K. Struhl (ed.), Current protocols in molecular biology. John Wiley & Sons, Inc., New York, NY.
-
-
-
-
7
-
-
0028036559
-
Control of translation by mRNA secondary structure in Escherichia coli. A quantitative analysis of literature data
-
de Smit, M. H., and J. van Duin. 1994. Control of translation by mRNA secondary structure in Escherichia coli. A quantitative analysis of literature data. J. Mol. Biol. 244:144-150.
-
(1994)
J. Mol. Biol
, vol.244
, pp. 144-150
-
-
de Smit, M.H.1
van Duin, J.2
-
8
-
-
0031576356
-
Programmed cell death by hok/sok of plasmid R1: Processing at the hok mRNA 3′-end triggers structural rearrangements that allows translation and antisense RNA binding
-
Franch, T., A. P. Gultyaev, and K. Gerdes. 1997. Programmed cell death by hok/sok of plasmid R1: processing at the hok mRNA 3′-end triggers structural rearrangements that allows translation and antisense RNA binding. J. Mol. Biol. 273:38-51.
-
(1997)
J. Mol. Biol
, vol.273
, pp. 38-51
-
-
Franch, T.1
Gultyaev, A.P.2
Gerdes, K.3
-
9
-
-
0033579543
-
Antisense RNA regulation in prokaryotes: Rapid RNA/RNA interaction facilitated by a general U-turn loop structure
-
Franch, T., M. Peterson, E. G. Wagner, J. P. Jacobsen, and K. Gerdes. 1999. Antisense RNA regulation in prokaryotes: rapid RNA/RNA interaction facilitated by a general U-turn loop structure. J. Mol. Biol. 294:1115-1125.
-
(1999)
J. Mol. Biol
, vol.294
, pp. 1115-1125
-
-
Franch, T.1
Peterson, M.2
Wagner, E.G.3
Jacobsen, J.P.4
Gerdes, K.5
-
10
-
-
0345333119
-
Unique type of plasmid maintenance function: Postsegregational killing of plasmid-free cells
-
Gerdes, K., P. B. Rasmussen, and S. Molin. 1986. Unique type of plasmid maintenance function: postsegregational killing of plasmid-free cells. Proc. Natl. Acad. Sci. USA 83:3116-3120.
-
(1986)
Proc. Natl. Acad. Sci. USA
, vol.83
, pp. 3116-3120
-
-
Gerdes, K.1
Rasmussen, P.B.2
Molin, S.3
-
11
-
-
0023777994
-
Translational control and differential RNA decay are key elements regulating postsegregational expression of the killer protein encoded by the parB locus of plasmid R1
-
Gerdes, K., and K. Helin. 1988. Translational control and differential RNA decay are key elements regulating postsegregational expression of the killer protein encoded by the parB locus of plasmid R1. J. Mol. Biol. 203:119-129.
-
(1988)
J. Mol. Biol
, vol.203
, pp. 119-129
-
-
Gerdes, K.1
Helin, K.2
-
12
-
-
0026746407
-
Mechanism of killer gene activation. Antisense RNA-dependent RNase III cleavage ensures rapid turn-over of the stable hok, srnB and pndA effector messenger RNAs
-
Gerdes, K., A. Nielsen, P. Thorsted, and E. G. Wagner. 1992. Mechanism of killer gene activation. Antisense RNA-dependent RNase III cleavage ensures rapid turn-over of the stable hok, srnB and pndA effector messenger RNAs. J. Mol. Biol. 226:637-649.
-
(1992)
J. Mol. Biol
, vol.226
, pp. 637-649
-
-
Gerdes, K.1
Nielsen, A.2
Thorsted, P.3
Wagner, E.G.4
-
15
-
-
20644462362
-
Micros for microbes: Non-coding regulatory RNAs in bacteria
-
Gottesman, S. 2005. Micros for microbes: non-coding regulatory RNAs in bacteria. Trends Genet. 21:399-404.
-
(2005)
Trends Genet
, vol.21
, pp. 399-404
-
-
Gottesman, S.1
-
16
-
-
0033866970
-
The antisense RNA of the par locus of pAD1 regulates the expression of a 33-amino-acid toxic peptide by an unusual mechanism
-
Greenfield, T. J., E. Ehli, T. Kirshenmann, T. Franch, K. Gerdes, and K. E. Weaver. 2000. The antisense RNA of the par locus of pAD1 regulates the expression of a 33-amino-acid toxic peptide by an unusual mechanism. Mol. Microbiol. 37:652-660.
-
(2000)
Mol. Microbiol
, vol.37
, pp. 652-660
-
-
Greenfield, T.J.1
Ehli, E.2
Kirshenmann, T.3
Franch, T.4
Gerdes, K.5
Weaver, K.E.6
-
17
-
-
0033866971
-
Antisense RNA regulation of the pAD1 par post-segregational killing system requires interaction at the 5′ and 3′ ends of the RNAs
-
Greenfield, T. J., and K. E. Weaver. 2000. Antisense RNA regulation of the pAD1 par post-segregational killing system requires interaction at the 5′ and 3′ ends of the RNAs. Mol. Microbiol. 37:661-670.
-
(2000)
Mol. Microbiol
, vol.37
, pp. 661-670
-
-
Greenfield, T.J.1
Weaver, K.E.2
-
18
-
-
0034768020
-
-
Greenfield, T. J., T. Franch, K. Gerdes, and K. E. Weaver. 2001. Antisense RNA regulation of the par post-segregational killing system: structural analysis and mechanism of binding of the antisense RNA, RNAII and its target, RNAl. Mol. Microbiol. 42:527-537.
-
Greenfield, T. J., T. Franch, K. Gerdes, and K. E. Weaver. 2001. Antisense RNA regulation of the par post-segregational killing system: structural analysis and mechanism of binding of the antisense RNA, RNAII and its target, RNAl. Mol. Microbiol. 42:527-537.
-
-
-
-
19
-
-
0029018327
-
Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter
-
Guzman, L., D. Belin, M. J. Carson, and J. Beckwith. 1995. Tight regulation, modulation, and high-level expression by vectors containing the arabinose PBAD promoter. J. Bacteriol. 177:4121-4130.
-
(1995)
J. Bacteriol
, vol.177
, pp. 4121-4130
-
-
Guzman, L.1
Belin, D.2
Carson, M.J.3
Beckwith, J.4
-
20
-
-
0141707105
-
Toxins-antitoxins: Plasmid maintenance, programmed cell death, and cell cycle arrest
-
Hayes, F. 2003. Toxins-antitoxins: plasmid maintenance, programmed cell death, and cell cycle arrest. Science 301:1496-1499.
-
(2003)
Science
, vol.301
, pp. 1496-1499
-
-
Hayes, F.1
-
21
-
-
0020823094
-
Modification of Streptococcus faecalis sex pheromones after acquisition of plasmid DNA
-
Ike, Y., R. A. Craig, B. A. White, Y. Yagi, and D. B. Clewell. 1983. Modification of Streptococcus faecalis sex pheromones after acquisition of plasmid DNA. Proc. Natl. Acad. Sci. USA 80:5369-5373.
-
(1983)
Proc. Natl. Acad. Sci. USA
, vol.80
, pp. 5369-5373
-
-
Ike, Y.1
Craig, R.A.2
White, B.A.3
Yagi, Y.4
Clewell, D.B.5
-
22
-
-
0025685246
-
RNase III-dependent hydrolysis of λ cII-O gene mRNA mediated by λ OOP antisense RNA
-
Krinke, L., and D. L. Wulff. 1990. RNase III-dependent hydrolysis of λ cII-O gene mRNA mediated by λ OOP antisense RNA. Genes Dev. 4:2223-2233.
-
(1990)
Genes Dev
, vol.4
, pp. 2223-2233
-
-
Krinke, L.1
Wulff, D.L.2
-
23
-
-
0026782639
-
Molecular, genetic, and functional analysis of the basic replicon of pVA380-1, a plasmid of oral streptococcal origin
-
LeBlanc, D. J., L. N. Lee, and A. Jaibat. 1992. Molecular, genetic, and functional analysis of the basic replicon of pVA380-1, a plasmid of oral streptococcal origin. Plasmid 28:130-145.
-
(1992)
Plasmid
, vol.28
, pp. 130-145
-
-
LeBlanc, D.J.1
Lee, L.N.2
Jaibat, A.3
-
24
-
-
0032514739
-
DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription
-
Majdalani, N., C. Cunning, D. Sledjeski, T. Elliott, and S. Gottesman. 1998. DsrA RNA regulates translation of RpoS message by an anti-antisense mechanism, independent of its action as an antisilencer of transcription. Proc. Natl. Acad. Sci. USA 95:12462-12467.
-
(1998)
Proc. Natl. Acad. Sci. USA
, vol.95
, pp. 12462-12467
-
-
Majdalani, N.1
Cunning, C.2
Sledjeski, D.3
Elliott, T.4
Gottesman, S.5
-
25
-
-
0029113833
-
Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII
-
Morfeldt, E., D. Taylor, A. von Gabain, and S. Arvidson. 1995. Activation of alpha-toxin translation in Staphylococcus aureus by the trans-encoded antisense RNA, RNAIII. EMBO J. 14:4569-4577.
-
(1995)
EMBO J
, vol.14
, pp. 4569-4577
-
-
Morfeldt, E.1
Taylor, D.2
von Gabain, A.3
Arvidson, S.4
-
26
-
-
4944264194
-
GadY, a small-RNA regulator of acid response genes in Escherichia coli
-
Opdyke, J. A., J. Kang, and G. Storz. 2004. GadY, a small-RNA regulator of acid response genes in Escherichia coli. J. Bacteriol. 186:6698-6705.
-
(2004)
J. Bacteriol
, vol.186
, pp. 6698-6705
-
-
Opdyke, J.A.1
Kang, J.2
Storz, G.3
-
27
-
-
0003903343
-
Molecular cloning: A laboratory manual
-
Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY
-
Sambrook, J., E. F. Fritsch, and T. Maniatis. 1989. Molecular cloning: a laboratory manual, 2nd cd. Cold Spring Harbor Laboratory Press, Cold Spring Harbor, NY.
-
(1989)
2nd cd
-
-
Sambrook, J.1
Fritsch, E.F.2
Maniatis, T.3
-
28
-
-
33645965566
-
Unfolding of mRNA secondary structure by the bacterial translation initiation complex
-
Studer, S. M., and S. Joseph. 2006. Unfolding of mRNA secondary structure by the bacterial translation initiation complex. Mol. Cell 22:105-115.
-
(2006)
Mol. Cell
, vol.22
, pp. 105-115
-
-
Studer, S.M.1
Joseph, S.2
-
29
-
-
0028943680
-
Mechanism of post-segregational killing: Secondary structure analysis of entire Hok mRNA from plasmid R1 suggests a fold-back structure that prevents translation and antisense RNA binding
-
Thisted, T., N. S. Sorenson, and K. Gerdes. 1995. Mechanism of post-segregational killing: secondary structure analysis of entire Hok mRNA from plasmid R1 suggests a fold-back structure that prevents translation and antisense RNA binding. J. Mol. Biol. 247:859-873.
-
(1995)
J. Mol. Biol
, vol.247
, pp. 859-873
-
-
Thisted, T.1
Sorenson, N.S.2
Gerdes, K.3
-
30
-
-
0023755694
-
Regulation of the pAD1 sex pheromone response in Enterococcus faecalis: Construction and characterization of lacZ transcriptional fusions in a key control region of the plasmid
-
Weaver, K. E., and D. B. Clewell. 1988. Regulation of the pAD1 sex pheromone response in Enterococcus faecalis: construction and characterization of lacZ transcriptional fusions in a key control region of the plasmid. J. Bacteriol. 170:4343-4352.
-
(1988)
J. Bacteriol
, vol.170
, pp. 4343-4352
-
-
Weaver, K.E.1
Clewell, D.B.2
-
31
-
-
0028044007
-
Identification and characterization of the Enterococcus faecalis plasmid pAD1-encoded stability determinant which produces two small RNA molecules necessary for its function
-
Weaver, K. E., and D. J. Tritle. 1994. Identification and characterization of the Enterococcus faecalis plasmid pAD1-encoded stability determinant which produces two small RNA molecules necessary for its function. Plasmid 32:168-181.
-
(1994)
Plasmid
, vol.32
, pp. 168-181
-
-
Weaver, K.E.1
Tritle, D.J.2
-
32
-
-
0029983026
-
Functional analysis of the Enterococcus faecalis plasmid pAD1-encoded stability determinant par
-
Weaver, K. E., K. D. Jensen, A. Colwell, and S. I. Sriram. 1996. Functional analysis of the Enterococcus faecalis plasmid pAD1-encoded stability determinant par. Mol. Microbiol. 20:53-63.
-
(1996)
Mol. Microbiol
, vol.20
, pp. 53-63
-
-
Weaver, K.E.1
Jensen, K.D.2
Colwell, A.3
Sriram, S.I.4
-
33
-
-
4544290155
-
Antisense RNA regulation by stable complex formation in the Enterococcus faecalis plasmid pAD1 par addiction system
-
Weaver, K. E., E. A. Ehli, J. S. Nelson, and S. Patel. 2004. Antisense RNA regulation by stable complex formation in the Enterococcus faecalis plasmid pAD1 par addiction system. J. Bacteriol. 186:6400-6408.
-
(2004)
J. Bacteriol
, vol.186
, pp. 6400-6408
-
-
Weaver, K.E.1
Ehli, E.A.2
Nelson, J.S.3
Patel, S.4
-
34
-
-
34247123592
-
Emerging plasmid-encoded antisense RNA regulated systems
-
Weaver, K. E. 2007. Emerging plasmid-encoded antisense RNA regulated systems. Curr. Opin. Microbiol. 10:110-116.
-
(2007)
Curr. Opin. Microbiol
, vol.10
, pp. 110-116
-
-
Weaver, K.E.1
-
35
-
-
0001910062
-
Highly efficient cloning system for Streptococcus faecalis protoplast transformation, shuttle vectors, and applications
-
J. J. Ferretti and R. Curtis III ed, American Society for Microbiology, Washington, DC
-
Wirth, R. F., and D. B. Clewell. 1987. Highly efficient cloning system for Streptococcus faecalis protoplast transformation, shuttle vectors, and applications, p. 25-27. In J. J. Ferretti and R. Curtis III (ed.), Streptococcal genetics. American Society for Microbiology, Washington, DC.
-
(1987)
Streptococcal genetics
, pp. 25-27
-
-
Wirth, R.F.1
Clewell, D.B.2
|