Isolation of monoclonal microcarriers colonized by fluorescent E. coli

Cytometry Part A

Volumn 73, Issue 9, 2008, Pages 788-798

  Walser, Marcel ^a   Leibundgut, Reto M ^b   Pellaux, Rene ^a   Panke, Sven ^a   Held, Martin ^a  

^a ETH ZURICH   (Switzerland)

^b UNIVERSITY OF ST GALLEN   (Switzerland)

Author keywords

COPAS plus particle analyzer and sorter; Fluorescent E. coli; In vitro compartmentalization (IVC); Microcarrier; Microencapsulation; Monoclonality; Ultrahigh throughput screening

Indexed keywords

GREEN FLUORESCENT PROTEIN;

ANALYZER; ARTICLE; BACTERIAL CELL; BACTERIUM COLONY; CELL COMPARTMENTALIZATION; DILUTION; ESCHERICHIA COLI; FEASIBILITY STUDY; FLUORESCENCE; HIGH THROUGHPUT SCREENING; HYDROGEL; ISOLATION PROCEDURE; MICROENCAPSULATION; MODEL; NONHUMAN; PRIORITY JOURNAL; PROTEIN EXPRESSION; TECHNOLOGY;

ALGINATES; CLONE CELLS; ESCHERICHIA COLI; FLOW CYTOMETRY; GLUCURONIC ACID; GREEN FLUORESCENT PROTEINS; HEXURONIC ACIDS; HYDROGELS; MICROSPHERES; POISSON DISTRIBUTION;

EID: 51449083364     PISSN: 15524922     EISSN: 15524930     Source Type: Journal    
DOI: 10.1002/cyto.a.20597     Document Type: Article

References (36)

1. Pereira DA, Williams JA. Origin and evolution of high throughput screening. Br J Pharmacol 2007;152:53-61.
2. Reymond JC, Babiak P. Screening systems. Adv Biochem Eng/Biotechnol 2007;105:31-58.
3. Inglese J, Johnson RL, Simeonov A, Xia M, Zheng W, Austin CP, Auld DS. High-throughput screening assays for the identification of chemical probes. Nat Chem Biol 2007;3:466-479.
4. Carpenter AE. Image-based chemical screening. Nat Chem Biol 2007;3:461-465.
5. Sauer S, Lange BMH, Gobom J, Nyarsik L, Seitz H, Lehrach H. Miniaturization in functional genomics and proteomics. Nat Rev Genet 2005;6:465-476.
6. Wan KH, Yu C, George RA, Carlson JW, Hoskins RA, Svirskas R, Stapleton M, Celniker SE. High-throughput plasmid cDNA library screening. Nat Protocols 2006;1:624-632.
7. Zimmermann H, Zimmermann D, Reuss R, Feilen PJ, Manz B, Katsen A, Weber M, Ihmig FR, Ehrhart F, Gessner P, Behringer M, Steinbach A, Wegner LH, Sukhorukov VL, Vasquez, Schneider S, Weber MM, Volke F, Wolf R, Zimmermann U. Towards a medically approved technology for alginate-based microcapsules allowing long-term immunoisolated transplantation. J Mater Sci Mater Med 2005;16:491-501.
8. Khattak SF, Spatara M, Roberts L, Roberts SC. Application of colorimetric assays to assess viability, growth and metabolism of hydrogel-encapsulated cells. Biotechnol Lett 2006;28:1361-1370.
9. Champagne CP, Fustier P. Microencapsulation for the improved delivery of bioactive compounds into foods. Curr Opin Biotechnol Plant Biotechnol Food Biotechnol 2007;18:184-190.
10. Weaver JC, McGrath P, Adams S. Gel microdrop technology for rapid isolation of rare and high producer cells. Nat Med 1997;3:583-585.
11. Zengler K, Walcher M, Clark G, Haller I, Toledo G, Holland T, Mathur EJ, Woodnutt G, Short JM, Keller M. High throughput cultivation of microorganisms using microcapsules. Methods Enzymol 2005;397:124-130.
12. Rabanel JM, Bertrand N, Sant S, Louati S, Hildgren P. Polysaccharide hydrogels for the preparation of immunoisolated cell delivery systems. ACS Symp Ser 2006;934:305-339.
13. Ryan C, Nguyen BT, Sullivan SJ. Rapid assay for mycobacterial growth and antibiotic susceptibility using gel microdrop encapsulation. J Clin Microbiol 1995;33:1720-1726.
14. Serp D, Cantana E, Heinzen C, von Stockar U, Marison IW. Characterization of an encapsulation device for the production of monodisperse alginate beads for cell immobilization. Biotechnol Bioeng 2000;70:41-53.
15. Jayasinghe SN, Suter N. Aero dynamically assisted jetting: a pressure driven approach for processing nanomaterials. Micro Nano Lett 2006;1:35-38.
16. Paepe ID, Declercq H, Cornelissen M, Schacht E. Novel hydrogels based on methacrylate-modified agarose. Polymer Int 2002;51:867-870.
17. Bienaimé C, Barbotin JN, Nava-Saucedo JE. How to build an adapted and bioactive cell microenvironment? A chemical interaction study of the structure of Ca-alginate matrices and their repercussion on confined cells. J Biomed Mater Res A 2003;67:376-388.
18. Heinemann M, Meinberg H, Büchs J, Koss HJ, Ansorge-Schumacher MB. Method for quantitative determination of spatial polymer distribution in alginate beads using Raman spectroscopy. Appl Spectrosc 2005;59:280-285.
19. Nir R, Lamed R, Gueta L, Sahar E. Single-cell entrapment and microcolony development within uniform microspheres amenable to flow cytometry. Appl Environ Microbiol 1990;56:2870-2875.
20. Rosenblatt JI, Hokanson JA, McLaughlin SR, Leary JF. Theoretical basis for sampling statistics useful for detecting and isolating rare cells using flow cytometry and cell sorting. Cytometry 1997;27:233-238.
21. Izumikawa M, Murata M, Tachibana K, Ebizuka Y, Fujii I. Cloning of modular type I polyketide synthase genes from salinomycin producing strain of Streptomyces albus. Bioorgan Med Chem 2003;11:3401-3405.
22. Sergeeva A, Kolonin MG, Molldrem JJ, Pasqualini R, Arap W. Display technologies: Application for the discovery of drug and gene delivery agents. Adv Drug Deliv Rev 2006;58:1622-1654.
23. Venter JC, Remington K, Heidelberg JF, Halpern AL, Rusch D, Eisen JA, Wu D, Paulsen I, Nelson KE, Nelson W, Fouts DE, Levy S, Knap AH, Lomas MW, Nealson K, White O, Peterson J, Hoffman J, Parsons R, Baden-Tillson H, Pfannkoch C, Rogers Y-H, Smith HO. Environmental genome shotgun sequencing of the sargasso sea. Science 2004;304:66-74.
24. Green BD, Keller M. Capturing the uncultivated majority. Curr Opin in Biotechnol 2006;17:236-240.
25. Huang JK, Cui Y, Chen CH, Clampitt D, Lin CT, Wen L. Molecular cloning and functional expression of bovine deoxyhypusine hydroxylase cDNA and homologs. Protein Express Purif 2007;54:126-133.
26. Farrar K, Donnison IS. Construction and screening of BAC libraries made from Brachypodium genomic DNA. Nat Protocols 2007;2:1661-1674.
27. Ibrahim SF, van den Engh G. High-speed cell sorting: Fundamentals and recent advances. Curr Opin Biotechnol 2003;14:5-12.
28. Sklar LA, Carter MB, Edwards BS. Flow cytometry for drug discovery, receptor pharmacology and high-throughput screening. Curr Opin Pharmacol 2007;7:527-534.
29. Nolan JP, Mandy FF Multiplexed and microparticle-based analyses: Quantitative tools for the large-scale analysis of biological systems. Cytometry Part A 2006;69A:318-325.
30. Weaver JC, Bliss JG, Powell KT, Harrison GI, Williams GB. Rapid clonal growth measurements at the single-cell level: Gel micordroplets and flow cytometry. Biotechnology 1991;9:873-877.
31. Dupuy D, Bertin N, Hidalgo CA, Venkatesan K, Tu D, Lee D, Rosenberg J, Svrzikapa N, Blanc A, Carnec A, Carvunis A-R, Pulak R, Shingles J, Reece-Hoyes J, Hunt-Newbury R, Viveiros R, Mohler WA, Tasan M, Roth FP, Le Peuch C, Hope IA, Johnsen R, Moerman DG, Barabasi A-L, Baillie D, Vidal M. Genome-scale analysis of in vivo spatiotemporal promoter activity in Caenorhabditis elegans. Nat Biotechnol 2007;25:663-668.
32. Quinones-Coello AT, Petrella LN, Ayers K, Melillo A, Mazzalupo S, Hudson AM, Wang S, Castiblanco C, Buszczak M, Hoskins RA, Cooley L. Exploring strategies for protein trapping in Drosophila. Genetics 2007;175:1089-1104.
33. Miller RL, Zhang P, Chen T, Rohrwasser A, Nelson RD Automated method for the isolation of collecting ducts. Am J Physiol Renal Physiol 2006;291:F236-F245.
34. Mampel J, Spirig T, Weber SS, Haagensen JAJ, Molin S, Hilbi H. Planktonic replication is essential for biofilm formation by Legionella pneumophila in a complex medium under static and dynamic flow conditions. Appl Environ Microbiol 2006;72:2885-2895.
35. Bertani G. Studies on lysogenesis I: The mode of phage liberation by lysogenic Escherichia coli. J Bacteriol 1951;62:293-300.
36. Neidhardt FC. Escherichia coli and Salmonella typhimurium. Cellular and Molecular Biology. Washington, DC: American Society for Microbiology; 1987.