A new theory and algorithm for reconstructing helical structures with a seam

Journal of Molecular Biology

Volumn 343, Issue 4, 2004, Pages 943-955

  Kikkawa, Masahide ^a  

^a UNIVERSITY OF TEXAS   (United States)

Author keywords

cryo electron microscopy; kinesin; microtubule; seam; three dimensional helical reconstruction

Indexed keywords

KINESIN;

ALGORITHM; ARTICLE; ASYMMETRIC HELICAL RECONSTRUCTION; CRYOELECTRON MICROSCOPY; DATA ANALYSIS; EXPERIMENT; FOURIER TRANSFORMATION; IMAGE ANALYSIS; MICROTUBULE; MODEL; PRIORITY JOURNAL; PROTEIN ANALYSIS; PROTEIN STRUCTURE; STRUCTURE ANALYSIS; THEORETICAL STUDY; THREE DIMENSIONAL IMAGING; VALIDATION PROCESS;

BACTERIA (MICROORGANISMS); NICOTIANA TABACUM; TOBACCO MOSAIC VIRUS;

EID: 5144235319     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.jmb.2004.08.051     Document Type: Article

References (19)

1. A. Klug, F.H.C. Crick, and H.W. Wyckoff Diffraction by helical structures Acta Crystallog. 11 1958 199 213
2. D. DeRosier, and A. Klug Reconstruction of three dimensional structures from electron micrographs Nature 217 1968 130
3. D.J. DeRosier, and P.B. Moore Reconstruction of three-dimensional images from electron micrographs of structures with helical symmetry J. Mol. Biol. 52 1970 355 369
4. A. Miyazawa, Y. Fujiyoshi, and N. Unwin Structure and gating mechanism of the acetylcholine receptor pore Nature 423 2003 949 955
5. K. Yonekura, S. Maki-Yonekura, and K. Namba Complete atomic model of the bacterial flagellar filament by electron cryomicroscopy Nature 424 2003 643 650
6. E.H. Egelman A robust algorithm for the reconstruction of helical filaments using single-particle methods Ultramicroscopy 85 2000 225 234
7. M. Kikkawa, T. Ishikawa, T. Nakata, T. Wakabayashi, and N. Hirokawa Direct visualization of the microtubule lattice seam both in vitro and in vivo J. Cell Biol. 127 1994 1965 1971
8. Y.H. Song, and E. Mandelkow The anatomy of flagellar microtubules: polarity, seam, junctions, and lattice J. Cell Biol. 128 1995 81 94
9. S. Trachtenberg, D.J. DeRosier, F. Zemlin, and E. Beckmann Non-helical perturbations of the flagellar filament: Salmonella typhimurium SJW117 at 9.6 Å resolution J. Mol. Biol. 276 1998 759 773
10. D.L. Caspar, and K.C. Holmes Structure of dahlemense strain of tobacco mosaic virus: a periodically deformed helix J. Mol. Biol. 46 1969 99 133
11. S. Ray, E. Meyhofer, R.A. Milligan, and J. Howard Kinesin follows the microtubule's protofilament axis J. Cell Biol. 121 1993 1083 1093
12. H. Sosa, and R.A. Milligan Three-dimensional structure of ncd-decorated microtubules obtained by a back-projection method J. Mol. Biol. 260 1996 743 755
13. F. Metoz, and R.H. Wade Diffraction by helical structures with seams: microtubules J. Struct. Biol. 118 1997 128 139
14. C. Toyoshima, and N. Unwin Three-dimensional structure of the acetylcholine receptor by cryoelectron microscopy and helical image reconstruction J. Cell Biol. 111 1990 2623 2635
15. C. Toyoshima Structure determination of tubular crystals of membrane proteins. I. Indexing of diffraction patterns Ultramicroscopy 84 2000 1 14
16. E.C. Titchmarsh Theory of the Fourier Integral 1937 Clarendon Press Oxford
17. M. van Heel Similarity measures between images Ultramicroscopy 21 1986 95 100
18. H. Sosa, A. Hoenger, and R.A. Milligan Three different approaches for calculating the three-dimensional structure of microtubules decorated with kinesin motor domains J. Struct. Biol. 118 1997 149 158
19. M. Kikkawa, Y. Okada, and N. Hirokawa 15 Å resolution model of the monomeric kinesin motor, KIF1A Cell 100 2000 241 252