Non-helical perturbations of the flagellar filament: Salmonella typhimurium SJW117 at 9.6 Å resolution

Journal of Molecular Biology

Volumn 276, Issue 4, 1998, Pages 759-773

  Trachtenberg, Shlomo ^a   Derosier, David J ^b   Zemlin, Friedrich ^c   Beckmann, Erich ^c  

^a HEBREW UNIVERSITY   (Israel)

^b BRANDEIS UNIVERSITY   (United States)

^c FRITZ HABER INSTITUT DER MAX PLANCK GESELLSCHAFT   (Germany)

Author keywords

Bacterial flagellar filaments; Cryo electron microscopy; Helical perturbations; Negative staining; Three dimensional helical reconstruction

Indexed keywords

BACTERIAL PROTEIN; PROTEIN SUBUNIT;

ARTICLE; CRYOELECTRON MICROSCOPY; FLAGELLUM; NONHUMAN; PRIORITY JOURNAL; PROTEIN DOMAIN; PROTEIN STRUCTURE; SALMONELLA TYPHIMURIUM;

BACTERIA (MICROORGANISMS); NEGIBACTERIA; SALMONELLA TYPHIMURIUM; TYPHIMURIUM;

EID: 0032489409     PISSN: 00222836     EISSN: None     Source Type: Journal    
DOI: 10.1006/jmbi.1997.1537     Document Type: Article

References (50)

1. Asakura S. Polymerization of flagellin and polymorphism of flagella. Advan. Biophys. 1:1970;99-155
2. Blundell T.L., Johnson L.N. Protein Crystallography. 1976;Academic Press, London, New York & San Francisco
3. Calladine C.R. Construction of bacterial flagella. Nature. 255:1975;121-124
4. Calladine C.R. Design requirements for the construction of bacterial flagella. J. Theor. Biol. 57:1976;469-489
5. Calladine C.R. Change of waveform in bacterial flagella the role of mechanics at the molecular level. J. Mol. Biol. 118:1978;457-479
6. Caspar D.L.D., Holmes K.C. Structure of Dahlemense strain of tobacco mosaic virus a periodically deformed helix. J. Mol. Biol. 46:1969;99-133
7. DePamphilis M.L., Adler J. Fine structure and isolation of the hook-basal body complex of flagella from Escherichia coli and Bacillus subtilis. J. Bacteriol. 105:1971;384-395
8. DePamphilis M.L., Adler J. Attachment of flagellar basal bodies to the cell envelope specific attachment to the outer, lipopolysaccaride membrane and the cytoplasmic membrane. J. Bacteriol. 105:1971;396-407
9. DeRosier D.J., Moore P.B. Reconstruction of three-dimensional images from electron micrographs of structures with helical symmetry. J. Mol. Biol. 52:1970;355-369
10. Dietrich I., Fox F., Knapek E., Lefranc G., Nachtrieb K., Weil R., Zerbst H. Improvements in electron microscopy by application of superconductivity. Ultramicroscopy. 2:1977;241-249
11. Dubochet J., Adrian M., Chang J.-J., Homo J.-C., Lepault J., McDowall A.W., Schultz P. Cryo-electron microscopy of vitrified specimens. Quart. Rev. Biophys. 21:1988;129-228
12. Egelman E.H. An algorithm for straightening images of curved filamentous structures. Ultramicroscopy. 19:1986;367-374
13. Finch J.T., Klug A. The helical surface lattice of bacterial flagella. Bancroft J.B., Davies D.R., Hopwood D.A., Horne R.W. The Generation of Subcellular Structures. vol. 1:1972;167-177 North Holland Publishing Company, Amsterdam & London
14. Hayat M.A. Principles and Techniques of Electron Microscopy. 3rd edit.:1989;328-351 CRC Press, Boca Raton, FL
15. Cryoprotection in electron microscopy. J. Microsc. 141:1986;385-391
16. Kamiya R., Asakura S., Wakabayashi K., Namba K. Transition of bacterial flagella from helical to straight forms with different subunit arrangements. J. Mol. Biol. 131:1979;725-742
17. Kamiya R., Hotani H., Asakura S. Polymorphic transitions in bacterial flagella. Symp. Soc. Expt. Biol. 35:1982;53-76
18. Klug A. The design of self-assembling systems of equal units. Warren K.B. Formation and Fate of Cell Organelles. vol. 6:1967;1-18 Academic Press, New York & London
19. Klug A., DeRosier D.J. Optical filtering of electron micrographs reconstruction of one-sided images. Nature. 212:1966;29-31
20. Krupski G., Goetz R., Ober K., Pleier E., Schmitt R. Structure of complex flagellar filaments in Rhizobium mellioti. J. Bacteriol. 162:1985;361-366
21. Lawn A.M. Comparison of the flagellins from different flagellar morphotypes of Escherichia coli. J. Gen. Microbiol. 101:1977;121-130
22. Lawn A.M., Ørskov I., Ørskov F. Morphological distinction between different H serotypes of Escherichia coli. J. Gen. Microbiol. 101:1977;111-119
23. Lembcke G., Zemlin F. Proceedings of the 12th International Congress of Electron Microscopy. 1991;102-103 San Francisco Press, San Francisco
24. Lowy J., Hanson J. Electron microscope studies of bacterial flagella. J. Mol. Biol. 11:1965;293-313
25. Macnab R.M. Flagella. Neidhardt F.C., Ingraham J.L., Low K.B., Magasanik B., Schaechter M., Umbarger H.W. Escherichia coli and Salmonella typhimurium - Cellular and Molecular Biology. vol. 1:1987;70-83 American Society for Microbiology, Washington, DC
26. Macnab R.M. Genetics, structure and assembly of the bacterial flagellum. Soc. Gen. Microbiol. Symp. 46:1992;77-106
27. Macnab R.M., Ornston M.K. Normal-to-curly flagellar transitions and their role in bacterial tumbling stabilization of an alternative quaternary structure by mechanical force. J. Mol. Biol. 112:1977;1-20
28. Marx R., Heumann W. Ueber Geisselfeinstrukturen und Fimbrien bei zwei Pseudomonas-Staemmen. Arch. Mikrobiol. 43:1962;245-254
29. Mimori Y., Yamashita I., Murata K., Fujiyoshi Y., Yonekura K., Toyoshima C., Namba K. The structure of the R-type straight flagellar filament of Salmonella at 9 Å resolution by electron cryomicroscopy. J. Mol. Biol. 249:1995;69-87
30. Morgan D.G., Macnab R.M., Francis N., DeRosier D.J. Domain organization of the subunit of the Salmonella typhimurium flagellar hook. J. Mol. Biol. 229:1993;79-84
31. Morgan D.G., Owen C., Melanson L.A., DeRosier D.J. Structure of bacterial flagellar filaments at 11 Å resolution packing of the α-helices. J. Mol. Biol. 249:1995;88-110
32. Namba K., Yamashita I., Vonderviszt F. Structure of the core and central channel of bacterial flagella. Nature. 342:1989;648-654
33. O'Brien E.J., Bennett P.M. Structure of straight flagella from a mutant Salmonella. J. Mol. Biol. 70:1972;133-152
34. Owen C., DeRosier D.J. A 13-Å map of the actin-scruin filament from the Limulus acrosomal process. J. Cell Biol. 123:1993;337-344
35. Rachel R., Jakubowski U., Tirtz H., Hegerl R., Baumeister W. Projected structure of the surface protein of Deinococcus radiodurans determined by cryomicroscopy. Ultramicroscopy. 20:1986;305-316
36. Ruiz T., Ranck J.L., Diaz-Avalos R., Caspar D.L.D., DeRosier D.J. Electron diffraction of helical particles. Ultramicroscopy. 55:1994;383-395
37. Schmitt R., Raska I., Mayer F. Plain and complex flagella of Pseudomonas rhodos analysis of fine structure and composition. J. Bacteriol. 117:1974;844-857
38. Schmitt R., Bamberger I., Acker G., Mayer F. Feinstrukturanalyse der komplexen Geisseln von Rhizobium lupini H13-3. Arch. Mikrobiol. 100:1974;145-162
39. Shirakihara Y., Wakabayashi T. Three dimensional image reconstruction of straight flagella from a mutant Salmonella typhimurium. J. Mol. Biol. 131:1979;458-507
40. Trachtenberg S., DeRosier D.J. Three-dimensional structure of the frozen-hydrated flagellar filament the left-handed filament of Salmonella typhimurium. J. Mol. Biol. 195:1987;581-601
41. Trachtenberg S., DeRosier D.J. Three-dimensional reconstruction of the falgellar filament of Caulobacter crescentus a flagellin lacking the outer domain and its amino acid sequence lacking an internal segment. J. Mol. Biol. 202:1988;787-808
42. Trachtenberg S., DeRosier D.J. A molecular switch subunit rotations involved in the right-to-left transitions of Salmonella typhimurium flagellar filaments. J. Mol. Biol. 220:1991;67-77
43. Trachtenberg S., Hammel I. The rigidity of bacterial flagellar filaments and its relation to filament polymorphism. J. Struct. Biol. 109:1992;18-27
44. Trachtenberg S., DeRosier D.J., Aizawa S.I., Macnab R.M. Pairwise perturbations of flagellin subunits the structural basis for the differences between plain and complex bacterial flagellar filaments. J. Mol. Biol. 190:1986;569-576
45. Trachtenberg S., DeRosier D.J., Macnab R.M. Three-dimensional structure of the complex flagellar filament of Rhizobium lupini and its relation to the structure of the plain filament. J. Mol. Biol. 195:1987;603-620
46. Trachtenberg S., Leonard K.R., Tichelaar W. Radial mass density functions of vitrified helical specimens determined by scanning transmission electron microscopy their potential use as substitutes for equatorial data. Ultramicroscopy. 45:1992;307-321
47. Valpuesta J.D., Henderson R., Frey T.G. Electron cryo-microscopy analysis of crystalline cytochrome oxidase. J. Mol. Biol. 214:1990;237-240
48. van Bruggen E.F.J., Wiebenger E.H., Gruber M. Negative staining electron microscopy of proteins at pH values below their isoelectric points its application to hemocyanin. Biochim. Biophys. Acta. 42:1960;171-176
49. Wade R.H., Chrétien D., Job D. Characterization of microtubule protofilament numbers how does the surface lattice accommodate? J. Mol. Biol. 212:1990;775-786
50. Zemlin F., Beckmann E., van der Mast K.D. A 200 kV electron microscope with Schottky field emitter and Helium-cooled superconducting objective lens. Ultramicroscopy. 63:1996;227-238