Quantitative trait loci affecting life span in replicated populations of Drosophila melanogaster. I. Composite interval mapping

Genetics

Volumn 168, Issue 1, 2004, Pages 301-311

  Forbes, Scott N ^a,b   Valenzuela, Robert K ^a   Keim, Paul ^a,b   Service, Philip M ^a  

^a NORTHERN ARIZONA UNIVERSITY   (United States)

^b ALASKA DEPARTMENT OF FISH AND GAME   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

ANIMAL EXPERIMENT; ARTICLE; CONFIDENCE INTERVAL; CONTROLLED STUDY; DROSOPHILA MELANOGASTER; FEMALE; GENETIC SELECTION; GENETIC VARIABILITY; LIFESPAN; MALE; MICROSATELLITE MARKER; NONHUMAN; PLEIOTROPY; PRIORITY JOURNAL; QUANTITATIVE TRAIT LOCUS;

ANALYSIS OF VARIANCE; ANIMALS; CHROMOSOME MAPPING; CROSSES, GENETIC; DROSOPHILA MELANOGASTER; LIKELIHOOD FUNCTIONS; LONGEVITY; MICROSATELLITE REPEATS; QUANTITATIVE TRAIT LOCI; VARIATION (GENETICS);

ANIMALIA; DROSOPHILA MELANOGASTER; MELANOGASTER;

EID: 5144234956     PISSN: 00166731     EISSN: None     Source Type: Journal    
DOI: 10.1534/genetics.103.023218     Document Type: Article

References (72)

1. ASKING, R., V. BURDE, K. GRAVES, R. HARI, E. FELDMAN et al., 2000 Forward and reverse selection for longevity in Drosophila is characterized by alteration of antioxidant gene expression and oxidative damage patterns. Exp. Gerontol. 35: 167-185.
2. BASTEN, C. J., B. S. WEIR and Z-B. ZENG, 1994 Zmap - a QTL cartographer, pp. 65-66 in 5th World Congress on Genetics Applied to Livestock Production: Computing Strategies and Software, edited by C. SMITH, J. S. GAVORA, B. BENKEL, J. CHESNAIS, W. FAIRFULL et al. Organizing Committee, 5th World Congress on Genetics Applied to Livestock Production, Guelph, Ontario, Canada.
3. BASTEN, C. J., B. S. WEIR and Z-B. ZENG, 2001 QTL Cartographer, Version 1.15. Department of Statistics, North Carolina State University, Raleigh, NC.
4. BEAVIS, W. D., 1995 The power and deceit of QTL experiments: lessons from comparative QTL studies. Proceedings of the Forty-ninth Annual Corn and Sorghum Industry Research Conference, ASTA, Washington, DC, pp. 252-268.
5. BENNEWITZ, J., N. REINSCH and E. KALM, 2002 Improved confidence intervals in quantitative trait loci mapping by permutation bootstrapping. Genetics 160: 1673-1686.
6. BUCK, S., R. A. WELLS, S. P. DUDAS, G. T. BAKER III and R. ARKING, 1993 Chromosomal localization and regulation of the longevity determinant genes in a selected strain of Drosophila melanogaster. Heredity 71: 11-22.
7. CHARLESWORTH, B., 1980 Evolution in Age-Structured Populations. Cambridge University Press, Cambridge, UK.
8. CHARLESWORTH, B., and D. CHARLESWORTH, 1985 Genetic variation in recombination in Drosophila. I. Responses to selection and preliminary genetic analysis. Heredity 54: 71-83.
9. CHARLESWORTH, B., and K. A. HUGHES, 1996 Age-specific inbreeding depression and components of genetic variance in relation to the evolution of senescence. Proc. Natl. Acad. Sci. USA 93: 6140-6145.
10. CHIPPINDALE, A. K., D. T. HOANG, P. M. SERVICE and M. R. ROSE, 1994 The evolution of development in Drosophila melanogaster selected for postponed senescence. Evolution 48: 1880-1899.
11. CHURCHILL, G. A., and R. W. DOERGE, 1994 Empirical threshold values for quantitative trait mapping. Genetics 138: 963-971.
12. CROW, J. F., and M. KIMURA, 1970 An Introduction to Population Genetics Theory. Harper & Row, New York.
13. CURTSINGER, J. W., 2002 Sex-specificity, lifespan QTLs, and statistical power. J. Gerontol. A Biol. Sci. Med. Sci. 57: B409-B414.
14. CURTSINGER, J. W., and A. A. KHAZAELI, 2002 Lifespan, QTLs, age-specificity, and pleiotropy in Drosophila. Mech. Ageing Dev. 123: 81-93.
15. CURTSINGER, J. W., P. M. SERVICE and T. PROUT, 1994 Antagonistic pleiotropy, reversal of dominance, and genetic polymorphism. Am. Nat. 144: 210-228.
16. CURTSINGER, J. W., H. H. FUKUI, A. S. RESLER, K. KELLY and A. A. KHAZAELI, 1998 Genetic analysis of extended life span in Drosophila melanogaster I. RAPD screen for genetic divergence between selected and control lines. Genetica 104: 21-32.
17. DARVASI, A., and M. SOLLER, 1995 Advanced intercross lines, an experimental population for fine genetic mapping. Genetics 141: 1199-1207.
18. DECKERT-CRUZ, D. J., R. H. TYLER, J. E. LANDMESSER and M. R. ROSE, 1997 Allozymic differentiation in response to laboratory demographic selection of Drosophila melanogaster. Evolution 51: 865-872.
19. DE LUCA, M., N. V. ROSHINA, G. L. GEIGER-THORNSBERRY, R. F. LYMAN, E. G. PASYUKOVA et al., 2003 Dopa decarboxylase (Ddc) affects variation in Drosophila longevity. Nat. Genet. 34: 429-433.
20. FLYBASE, 1999 The FlyBase database of the Drosophila genome projects and community literature. Nucleic Acids Res. 27: 85-88.
21. FUKUI, H. H., and A. W. KIRSCHER, 1993 Thanatometer II: a chamber designed for large mixed-sex populations of Drosophila melanogaster. Dros. Inf. Serv. 72: 72-73.
22. GOLDSTEIN, D. B., 2001 The Drosophila microsatellite database (http:// www.ucl.ac.uk/biology/goldstein/ms_db).
23. GRAVES, J. L., E. C. TOOLSON, C. JEONG, L. N. VU and M. R. ROSE, 1992 Desiccation, flight, glycogen, and postponed senescence in Drosophila melanogaster. Physiol. Zool. 65: 268-286.
24. GUR-ARIE, R., C. J. COHEN, Y. EITAN, L. SHELEF, E. M. HALLERMAN et al., 2000 Simple sequence repeats in Escherichia coli: abundance, distribution, composition, and polymorphism. Genome Res. 10: 62-71.
25. HARSHMAN, L. G., K. M. MOORE, M. A. STY and M. M. MAGWIRE, 1999 Stress resistance and longevity in selected lines of Drosophila melanogaster. Neurobiol. Aging 20: 521-529.
26. HUGHES, K. A., 1995 The evolutionary genetics of male life-history characters in Drosophila melanogaster. Evolution 49: 521-537.
27. HUGHES, K. A., and B. CHARLESWORTH, 1994 A genetic analysis of senescence in Drosophila. Nature 367: 64-66.
28. LANDER, E., P. GREEN, J. ABRAHAMSON, A. BARLOW, M. DALEY et al., 1987 Mapmaker: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics 1: 174-181.
29. LEBRETON, C. M., and P. M. VISSCHER, 1998 Empirical nonparametric bootstrap strategies in quantitative trait loci mapping: conditioning on the genetic model. Genetics 148: 525-535.
30. LEIPS, J., and T. F. C. MACKAY, 2000 Quantitative trait loci for life span in Drosophila melanogaster: interactions with genetic background and larval density. Genetics 155: 1773-1788.
31. LEROI, A. M., A. K. CHIPPENDALE and M. R. ROSE, 1994 Long-term laboratory evolution of a genetic life-history trade-off in Drosophila melanogaster. 1. The role of genotype-by-environment interaction. Evolution 48: 1244-1257.
32. LINCOLN, S., M. DALEY and E. LANDER, 1992 Constructing Genetic Maps With Mapmaker/Exp 3.0, Ed. 3. Whitehead Institute, Cambridge, MA.
33. LINCOLN, S., M. DALY and E. S. LANDER, 1993 Mapmaker/QTL 1.1 Manual. Whitehead Institute, Cambridge, MA.
34. LUCKINBILL, L. S., and E. M. GOLENBERG, 2002 Genes affecting aging: mapping quantitative trait loci in Drosophila melanogaster using amplified fragment length polymorphisms (AFLPs). Genetica 114: 147-156.
35. LUCKINBILL, L. S., R. ARKING, M. J. CLARE, W. C. CIROCCO and S. A. BUCK, 1984 Selection for delayed senescence in Drosophila melanogaster. Evolution 38: 996-1003.
36. LUCKINBILL, L. S., J. L. GRAVES, A. H. REED and S. KOETSAWANG, 1988 Localizing genes that defer senescence in Drosophila melanogaster. Heredity 60: 367-374.
37. LYNCH, M., and B. WALSH, 1998 Genetics and Analysis of Quantitative Traits. Sinauer Associates, Sunderland, MA.
38. MACKAY, T. F. C., 2002 The nature of quantitative genetic variation for Drosophila longevity. Mech. Ageing Dev. 123: 95-104.
39. MEDAWAR, P. B., 1946 Old age and natural death. Modern Quarterly 2: 30-49.
40. MUELLER, L. D., 1987 Evolution of accelerated senescence in laboratory populations of Drosophila. Proc. Natl. Acad. Sci. USA 84: 1974-1977.
41. NATIONAL CENTER FOR BIOTECHNOLOGY INFORMATION, 2000 Drosophila melanogaster genome (http://www.ncbi.nih.gov/mapview/ map_search.cgi?taxid=7227) .
42. NUZHDIN, S. V., E. G. PASYUKOVA, C. L. DILDA, Z-B. ZENG and T. F. C. MACKAY, 1997 Sex-specific quantitative trait loci affecting longevity in Drosophila melanogaster. Proc. Natl. Acad. Sci. USA 94: 9734-9739.
43. ORR, W. C., and R. C. SOHAL, 1994 Extension of life span by overexpression of superoxide dismutase and catalase in Drosophila melanogaster. Science 263: 1128-1130.
44. PARTRIDGE, L., and K. FOWLER, 1992 Direct and correlated responses to selection on age at reproduction in Drosophila melanogaster. Evolution 46: 76-91.
45. PASYUKOVA, E. G., C. VIEIRA and T. F. C. MACKAY, 2000 Deficiency mapping of quantitative trait loci affecting longevity in Drosophila melanogaster. Genetics 156: 1129-1146.
46. PEARL, R., 1922 The Biology of Death, Being a Series of Lectures Delivered at the Lowell Institute in Boston in December 1920. J. B. Lippincott, Philadelphia.
47. PLETCHER, S. D., D. HOULE and J. W. CURTSINGER, 1998 Age-specific properties of spontaneous mutations affecting mortality in Drosophila melanogaster. Genetics 148: 287-303.
48. PROMISLOW, D. E. L., M. TATAR, A. A. KHAZAELI and J. W. CURTSINGER, 1996 Age-specific patterns of genetic variance in Drosophila melanogaster. I. Mortality. Genetics 143: 839-848.
49. REIWITCH, S. G., and S. V. NUZHDIN, 2002 Quantitative trait loci for lifespan of Drosophila melanogaster affect both sexes. Genet. Res. 80: 225-230.
50. RESLER, A. S., K. KELLY, G. KANTOR, A. A. KHAZAELI, M. TATAR et al., 1998 Genetic analysis of extended life span in Drosophila melanogaster II. Replication of the backcross test and molecular characterization of the N14 locus. Genetica 104: 33-39.
51. ROSE, M. R., 1982 Antagonistic pleiotropy, dominance, and genetic variation. Heredity 48: 63-78.
52. ROSE, M. R., 1984 Laboratory evolution of postponed senescence in Drosophila melanogaster. Evolution 38: 1004-1010.
53. ROSE, M. R., 1991 Evolutionary Biology of Aging. Oxford University Press, New York.
54. SCHEINER, S. M., R. L. CAPLAN and R. F. LYMAN, 1989 A search for trade-offs among life history traits in Drosophila melanogaster. Evol. Ecol. 3: 51-63.
55. SCHUG, M. D., K. A. WETTERSTRAND, M. S. GAUDETTE, R. H. LIM, C. M. HUTTER et al., 1998 The distribution and frequency of microsatellite loci in Drosophila melanogaster. Mol. Ecol. 7: 57-70.
56. SERVICE, P. M., 1993 Laboratory evolution of longevity and reproductive fitness components in male fruit flies: mating ability. Evolution 46: 387-399.
57. SERVICE, P. M., 2000 The genetic structure of female life history in D. melanogaster: comparisons among populations. Genet. Res. 75: 153-166.
58. SERVICE, P. M., and R. E. VOSSBRINK, 1996 Genetic variation in "first" male effects on egg laying and remating by female Drosophila melanogaster. Behav. Genet. 26: 39-48.
59. SERVICE, P. M., E. W. HUTCHINSON, M. D. MACKINLEY and M. R. ROSE, 1985 Resistance to environmental stress in Drosophila melanogaster selected for postponed senescence. Physiol. Zool. 58: 380-389.
60. SERVICE, P. M., E. W. HUTCHINSON and M. R. ROSE, 1988 Multiple genetic mechanisms for the evolution of senescence in Drosophila melanogaster. Evolution 42: 708-716.
61. SERVICE, P. M., C. A. MICHIELI and K. MCGILL, 1998 Experimental evolution of senescence: an analysis using a "heterogeneity" mortality model. Evolution 52: 1844-1850.
62. SOHAL, R. S., and R. WEINDRUCH, 1996 Oxidative stress, caloric restriction, and aging. Science 273: 59-63.
63. STEARNS, S. C., M. KAISER and E. HILLESHIEM, 1993 Effects on fitness components of enhanced expression of elongation factor EF-1α in Drosophila melanogaster. I. The contrasting approaches of molecular and population biologists. Am. Nat. 142: 961-993.
64. TATAR, M., D. E. L. PROMISLOW, A. A. KHAZAELI and J. W. CURTSINGER, 1996 Age-specific patterns of genetic variance in Drosophila melanogaster. II. Fecundity and its genetic covariance with age-specific mortality. Genetics 143: 849-858.
65. VALENZUELA, R. K., S. N. FORBES, P. KEIM, and P. M. SERVICE, 2004 Quantitative trait loci affecting life span in replicated populations of Drosophila melanogaster. II. Response to selection. Genetics 168: 313-324.
66. VIEIRA, C., E. G. PASYUKOVA, Z-B. ZENG, J. B. HACKETT, R. F. LYMAN et al., 2000 Genotype-environment interaction for quantitative trait loci affecting life span in Drosophila melanogaster. Genetics 54: 213-227.
67. VISSCHER, P. M., R. THOMPSON and C. S. HALEY, 1996 Confidence intervals in QTL mapping by bootstrapping. Genetics 143: 1013-1020.
68. VOSSBRINK, R., 1997 An analysis of Drosophila melanogaster populations divergent in longevity using amplified fragment length polymorphism markers. M.S. Thesis, Northern Arizona University, Flagstaff, AZ.
69. WAYNE, M. L., J. B. HACKETT, C. L. DILDA, S. V. NUZHDIN, E. G. PASYUKOVA et al., 2001 Quantitative trait locus mapping of fitness-related traits in Drosophila melanogaster. Genet. Res. 77: 107-116.
70. WRIGHT, S., 1977 Evolution and the Genetics of Populations, Vol. 3: Experimental Results and Evolutionary Deductions. University of Chicago Press, Chicago.
71. ZENG, Z-B., 1994 Precision mapping of quantitative trait loci. Genetics 136: 1457-1468.
72. ZWAAN, B., R. BIJLSMA and R. F. HOEKSTRA, 1995 Direct selection on life span in Drosophila melanogaster. Evolution 49: 649-659.