Colocation between a gene encoding the bZip factor SPA and an eQTL for a high-molecular-weight glutenin subunit in wheat (Triticum aestivum)

Genome

Volumn 47, Issue 4, 2004, Pages 705-713

  Guillaumie, Sabine ^a   Charmet, Gilles ^a   Linossier, Laurent ^b   Torney, Valérie ^a   Robert, Nathalie ^a,c   Ravel, Catherine ^a  

^a UNIVERSITÉ CLERMONT AUVERGNE   (France)

^b ULICE   (France)

^c ISAB   (France)

Author keywords

High molecular weight glutenin subunit (HMW GS); Quantitative trait locus (QTL); Single nucleotide polymorphism (SNP); Storage protein activator (SPA); Triticum aestivum

Indexed keywords

BASIC LEUCINE ZIPPER TRANSCRIPTION FACTOR; DNA BINDING PROTEIN; DRUG DERIVATIVE; G BOX BINDING FACTOR; GLUTEN; GLUTENIN; LEUCINE ZIPPER PROTEIN; PLANT DNA; PROTEIN SUBUNIT; STORAGE PROTEIN ACTIVATOR; TRANSACTIVATOR PROTEIN; TRANSCRIPTION FACTOR; VEGETABLE PROTEIN;

ARTICLE; CHEMISTRY; CHROMOSOME MAP; CLASSIFICATION; COMPARATIVE STUDY; CROSS BREEDING; GENE; GENETICS; MOLECULAR GENETICS; MOLECULAR WEIGHT; NUCLEOTIDE SEQUENCE; QUANTITATIVE TRAIT LOCUS; RESTRICTION FRAGMENT LENGTH POLYMORPHISM; SEQUENCE HOMOLOGY; SINGLE NUCLEOTIDE POLYMORPHISM; SPECIES DIFFERENCE; WHEAT;

BASE SEQUENCE; BASIC-LEUCINE ZIPPER TRANSCRIPTION FACTORS; CHROMOSOME MAPPING; CROSSES, GENETIC; DNA, PLANT; DNA-BINDING PROTEINS; G-BOX BINDING FACTORS; GENES, PLANT; GLUTEN; LEUCINE ZIPPERS; MOLECULAR SEQUENCE DATA; MOLECULAR WEIGHT; PLANT PROTEINS; POLYMORPHISM, RESTRICTION FRAGMENT LENGTH; POLYMORPHISM, SINGLE NUCLEOTIDE; PROTEIN SUBUNITS; QUANTITATIVE TRAIT LOCI; SEQUENCE HOMOLOGY, NUCLEIC ACID; SPECIES SPECIFICITY; TRANS-ACTIVATORS; TRANSCRIPTION FACTORS; TRITICUM;

EMBRYOPHYTA; TRITICUM; TRITICUM AESTIVUM;

EID: 5144231486     PISSN: 08312796     EISSN: None     Source Type: Journal    
DOI: 10.1139/G04-031     Document Type: Article

References (43)

1. Albani, D., Hammond-Kosack, M.C.U., Smith, C., Conlan, S., Colot, V., Holdsworth, M., and Bevan, M. 1997. The wheat transcriptional activator SPA: a seed-specific bZIP protein that recognizes the GCN4-like motif in the bifactorial endosperm box of prolamin genes. Plant Cell, 9: 171-184.
2. Altschul, S.F., Madden, T.L., Schaffer, A.A., Jinghui Zhang, Z.Z., Miller, W., and Lipman, D.J. 1997. Gapped BLAST and PSI-BLAST: a new generation of protein database search programs. Nucleic Acids Res. 25: 3389-3402.
3. Anderson, J.A., Ogihara, Y., Sorrells, M.E., and Tanksley, S.D. 1992. Development of a chromosomal arm map for wheat based on RFLP markers. Theor. Appl. Genet. 83: 1035-1043.
4. Anderson, O.D., Abraham-Pierce, F.A., and Tam, A. 1998. Conservation in wheat high-molecular-weight glutenin promoter sequences: comparisons among loci and among alleles of the GLU-BI-I locus. Theor. Appl. Genet. 96: 568-576.
5. Branlard, G., and Dardevet, M. 1985. Diversity of grain protein and bread wheat quality. II. Correlation between high molecular weigh subunits of glutenin and flour quality characteristics. J. Cereal Sci. 3: 345-354.
6. Branlard, G., Dardevet, M., Saccomano, R., Lagoutte, F., and Gourdon, J. 2001. Genetic diversity of wheat storage proteins and bread wheat quality. Euphytica, 119: 59-67.
7. Cadalen, T., Bœuf, C., Bernard, S., and Bernard, M. 1997. An intervarietal molecular marker map in Triticum aestivum L. Em. Thell., and comparison with a map from wide cross. Theor. Appl. Genet. 94: 367-377.
8. Carbonero, P., Vicente-Carbajosa, J., Mena, M., Onate, L., Lara, P., and Diaz, I. 2000. BZip and Dof transcription factors in the regulation of gene expression in barley endosperm. In Seed biology: advances and applications. Edited by M. Black, K.J. Bradford, and J. Vazquez-Ramos. CABI Publishing, Wallingford, UK. pp. 27-41.
9. Carceller, J.L., and Aussenac, T. 1999. Accumulation and changes in molecular size distribution of polymeric proteins in developing grains of hexaploid wheats: role of the dessication phase. Aust. J. Plant Physiol. 26: 301-310.
10. Colot, V., Bartels, D., Thompson, R., and Flavell, R. 1989. Molecular characterization of an active wheat LMW glutenin gene and its relation to other wheat and barley prolamin genes. Mol. Gen. Genet. 216: 81-90.
11. Conlan, R., Hammond-Kosack, M., and Bevan, M. 1999. Transcription activation mediated by the bZIP factor SPA on the endosperm box is modulated by ESBF-1 in vitro. Plant J. 19: 173-181.
12. Diaz, I., Vicente-Carbajosa, J., Abraham, Z., Martinez, M., Isabel-Lamoneda, I., Carbonero, P. 2002. The GAMYB protein from barley interacts with the DOF transcription factor BPBF and activates endosperm-specific genes during seed development. Plant J. 29: 453-464.
13. Di Fonzo, N., Formasari, E., Salamini, F., Reggiani, R., and Soave, C. 1979. Interaction of the mutants floury-2, opaque-7 with opaque-2 in the synthesis of endosperm proteins. J. Hered. 71: 397-402.
14. Groos, C., Robert, N., Bervas, E., and Charmet, G. 2002. Analysis of genetic, environmental and genetic x environmental components for grain protein content, grain yield and thousand kernel weight in bread wheat. Theor. Appl. Genet. 104: 39-47.
15. Hammond-Kosack, M.C.U., Holdsworth, M.J., and Bevan, M.W. 1993. In vivo footprinting of a low molecular weight glutenin gene (LMWG-1D1) in wheat endosperm. EMBO J. 12: 545-554.
16. Hartings, H., Lazzaroni, N., Rossi, V., Riboldi, G.R., Thompson, R.D., Salamini, F., and Motto, M. 1995. Molecular analysis of opaque-2 alleles from Zea mays L. reveals the nature of mutational events and the presence of a hypervariable region in the 5′ part of the gene. Genet. Res. 65: 11-19.
17. Hyne, V., and Kearsey, M.J. 1995. QTL analysis: further uses of "marker regression". Theor. Appl. Genet. 91: 471-476.
18. Juhàsz, A., Gàrdonyi, M., Tamàs, L., and Bedõ, Z. 2003. Characterization of the promoter region of Glu-1Bx7 gene from everexpressing lines of an old Hungarian wheat variety. In Proceedings of the 10th International Wheat Genetics Symposium, Paestum, Italy, 1-6 September 2003. Edited by N.E. Pogna, M. Romanò, E.A. Pogna, and G. Galterio. Instituto Sperimentale par la Cerealicoltura, Paestum, Italy. pp. 1348-1350.
19. Kearsey, M.J., and Hyne, V. 1994. QTL analysis: a simple "marker regression" approach. Theor. Appl. Genet. 89: 698-702.
20. Kodrzycki, R., Boston, R.S., and Larkins, B.A. 1989. The opaque-2 mutation of maize differentially reduced zein gene transcription. Plant Cell, 1: 105-114.
21. Kosambi, D.D. 1944. The estimations of map distance from recombination value. Ann. Eugenics, 12: 172-175.
22. Lander, E.S., Geen, P., Abrahanson, J., Barlow, A., Daly, M.J., Lincoln, S.E., and Newbur, L. 1987. MAPMAKER: an interactive computer package for constructing primary genetic linkage maps of experimental and natural populations. Genomics, 1: 174-181.
23. Leroy, P., Nègre, S., Tixier, M.H., Perretant, M.R., Sourdille, P., et al. 1997. A genetic reference map for the bread wheat genome - Triticum aestivum L. em. Thell. In Progress in Genome Mapping of Wheat and Related Species. Joint Proceedings of 5th and 6th Public Workshops of the International Triticeae Mapping Initiative, Norwich, UK, 1-3 September 1995 and Sydney, Australia, 30-31 August 1996. Report No. 18. Edited by P.E. McGuire, and C.O. Qualset. University of California Genetic Resources Conservation Program, Davis, Calif. pp. 134-140.
24. Lohmer, S., Maddaloni, M., Motto, M., Di Fonzo, N., Kartings, H., Salamini, F., and Thompson, R.D. 1991. The maize regulatory locus Opaque-2 encodes a DNA-binding protein which activates the transcription of the b-32 gene. EMBO J. 10: 617-624.
25. Lohmer, S., Maddaloni, M., Motto, M., Salamini, F., and Thompson, R.D. 1993. Translation of the mRNA of the maize transcriptional activator Opaque-2 is inhibited by upstream open reading frames present in the leader sequence. Plant Cell, 5: 65-73.
26. 32P and digoxygenin-labelled single copy probes for RFLP detection in wheat. Agronomie, 14: 33-39.
27. Mena, M., Vicente-Carbajosa, J., Schmidt, R.J., and Carbonero, P. 1998. An endosperm-specific DOF protein from barley, highly conserved in wheat, binds to and activates transcription from prolamin-box of a native B-hordein promoter in barley endosperm. Plant J. 16: 53-62.
28. Metakovsky, E.V., Félix, I., and Branlard, G. 1997. Association between dough quality (W value) and certain gliadin alleles in French common wheat cultivars. J. Cereal Sci. 26: 371-373.
29. Motto, M., Di Fonzo, N., Hartings, H., Maddaloni, M., Salamini, F., Soave, C., and Thompson, R.D. 1989. Regulatory genes affecting maize storage protein synthesis. Oxford Surv. Plant Mol. Cell. Biol. 6: 87-114.
30. Murigneux, A., Barloy, D., Leroy, P., and Beckert, M. 1993. Molecular and morphological evaluation of doubled haploid lines in maize: 1. Homogeneity within DH lines. Theor. Appl. Genet. 86: 837-842.
31. Norre, F., Peyrot, C., Garcia, C., Rancé, I., Drevet, J., Theisen, M., and Gruber, V. 2002. Powerful effect of an atypical bifactorial endosperm box from wheat HMWG-Dx5 promoter in maize endosperm. P. Mol. Biol. 50: 699-712.
32. Oñate, L., Vicente-Carbajosa, J., Lara, P., Diaz, I., and Carbonero, P. 1999. Barley BLZ2, a seed-specific bZIP protein that interacts with BLZ1 in vivo and activates transcription from the GCN4-like motif of B-hordein promoters in barley endosperm. J. Biol. Chem. 274: 9175-8182.
33. Payne, P.I. 1987. Genetics of wheat storage proteins and the effects of allelic variation on breadmaking quality. Annu. Rev. Plant Physiol. 38: 141-153.
34. Rozen, S., and Staletsky, H.J. 2000. Primer3 on the WWW for general users and for biologist programmers. Methods Mol. Biol. 132: 365-386.
35. Sears, E.R. 1954. The aneuploid of common wheat. University of Missouri Res. Bull. 572: 1-58.
36. Sears, E.R. 1966. Nullisomic-tetrasomic combinations in hexaploid wheat. In Chromosome manipulations and plant genetics. Edited by R. Riley, and K.R. Lewis. Olivier and Boyd, Edinburgh, UK. pp. 29-45.
37. Shewry, P.R., Halford, N.G., and Tatham, A.S. 1992. The high molecular weight subunits of wheat glutenin. J. Cereal Sci. 15: 105-120.
38. Splus. 1993. Splus guide to statistical and mathematical analyses. Mathsoft, Seattle, Wash.
39. Staden, R., Beal, K.F., and Bonfield, J.K. 2000. The Saden package, 1998. Methods Mol. Biol. 132: 115-130.
40. Vicente-Carbajosa, J., Moose, S.P., Parsons, R.L., and Schmidt, R.J. 1997. A maize zinc-finger protein binds the prolamin box in zein gene promoters and interacts with the basic leucine zipper transcriptional activator Opaque2. Proc. Natl. Acad. Sci. U.S.A. 94: 7695-7690.
41. Vicente-Carbajosa, J., Oñate, L., Lara, P., Diaz, I., and Carbonero, P. 1998. Barley BLZ1 : a bZip transcriptional activator that interacts with endosperm-specific gene promoters. Plant J. 13: 629-640.
42. Visscher, P.M., Thompson, R., and Haley, C.S. 1996. Confidence intervals in QTL mapping by bootstrapping. Genetics, 143: 1013-1020.
43. Wanous, M.K., Munkvold, J.D., Kruse, J.D., Brachman, E.E., Klawiter, M.A., and Fuehrer, K.J. 2003. Identification of chromosome arms influencing expression of the HMW glutenins in wheat. Theor. Appl. Biol. 106: 213-220.