Carbon metabolism of the moderately acid-tolerant acetogen Clostridium drakei isolated from peat

FEMS Microbiology Letters

Volumn 287, Issue 2, 2008, Pages 236-242

  Gößner, Anita S ^a   Picardal, Flynn ^b   Tanner, Ralph S ^c   Drake, Harold L ^a  

^a UNIVERSITY OF BAYREUTH   (Germany)

^b INDIANA UNIVERSITY   (United States)

^c UNIVERSITY OF OKLAHOMA   (United States)

Author keywords

Acetogenesis; Acetyl CoA pathway; Clostridium drakei; Methanogenesis; Skatole; Wetlands

Indexed keywords

ACETIC ACID; BUTYRIC ACID; CELLOBIOSE; FERULIC ACID; FORMIC ACID; GLUCOSE; LACTIC ACID; PEAT; PROPANOL; VANILLIC ACID; XYLOSE;

ACID TOLERANCE; ARTICLE; CARBON METABOLISM; CLOSTRIDIUM; CLOSTRIDIUM CARBOXIDIVORANS; CLOSTRIDIUM DRAKEI; CLOSTRIDIUM SCATOLOGENES; CONTROLLED STUDY; DNA DNA HYBRIDIZATION; NONHUMAN; NUCLEOTIDE SEQUENCE; OXYGEN CONSUMPTION; PH MEASUREMENT; PHYLOGENY; PRIORITY JOURNAL; TEMPERATURE SENSITIVITY;

ACIDS; CARBON; CLOSTRIDIUM; DNA, BACTERIAL; DNA, RIBOSOMAL; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; OXYGEN; PHYLOGENY; RNA, RIBOSOMAL, 16S; SOIL MICROBIOLOGY;

BACTERIA (MICROORGANISMS); CLOSTRIDIUM CARBOXIDIVORANS; CLOSTRIDIUM DRAKEI; CLOSTRIDIUM SCATOLOGENES;

EID: 51349106585     PISSN: 03781097     EISSN: 15746968     Source Type: Journal    
DOI: 10.1111/j.1574-6968.2008.01313.x     Document Type: Article

References (53)

1. Balk M, van Gelder T, Weelink SA Stams AJM (2008) (Per)chlorate reduction by the thermophilic bacterium Moorella perchloratireducens sp. nov., isolated from underground gas storage. Appl Environ Microbiol 74 : 403 409.
2. Baronofsky JJ, Schreurs WJA Kashket ER (1984) Uncoupling by acetic acid limits growth of and acetogenesis by Clostridium thermoaceticum. Appl Environ Microbiol 48 : 1134 1139.
3. Boga HI, Ludwig W Brune A (2003) Sporomusa aerivorans sp. nov., an oxygen-reducing homoacetogenic bacterium from the gut of a soil-feeding termite. Int J Syst Evol Microbiol 53 : 1397 1404.
4. 2 in the presence of rifampicin, or by low concentrations of acetate. Geomicrobiol J 21 : 433 443.
5. Brauman A, Kane MD, Labat M Breznak JA (1992) Genesis of acetate and methane by gut bacteria of nutritionally diverse termites. Science 257 : 1384 1387.
6. Breznak JA (1994) Acetogenesis from carbon dioxide in termite guts. Acetogenesis (Drake HL, ed), pp. 303 330. Chapman and Hall Inc., New York.
7. Brune A, Emerson D Breznak JA (1995) The termite gut microflora as an oxygen sink: microelectrode determination of oxygen and pH gradients in guts of lower and higher termites. Appl Environ Microbiol 61 : 2681 2687.
8. Buckel W (2005) Special clostridial enzymes and fermentation pathways. Handbook on Clostridia (Dürre P, ed), pp. 177 220. CRC Press, Boca Raton, FL.
9. 2- and CO-dependent chemolithotrophic potentials of the acetogens Clostridium thermoaceticum and Acetogenium kivui. J Bacteriol 172 : 4464 4471.
10. Das A, Coulter ED, Kurtz Jr DM Ljungdahl LG (2001) Five-gene cluster in Clostridium thermoaceticum consisting of two divergent operons encoding rubredoxin oxidoreductase - rubredoxin and rubrerythrin-type flavodoxin - high-molecular-weight rubredoxin. J Bacteriol 183 : 1560 1567.
11. Das A, Silaghi-Dumitrescu R, Ljungdahl LG Kurtz Jr DM (2005) Cytochrome bd oxidase, oxidative stress, and dioxygen tolerance of the strictly anaerobic bacterium Moorella thermoacetica. J Bacteriol 187 : 2020 2029.
12. Degraeve KG, Grivet JP, Durand M, Beaumatin P, Cordelet C, Hannequart G Demeyer D (1994) Competition between reductive acetogenesis and methanogenesis in the pig large-intestinal flora. J Appl Bacteriol 76 : 55 61.
13. Drake HL Daniel SL (2004) Physiology of the thermophilic acetogen Moorella thermoacetica. Res Microbiol 155 : 869 883.
14. Drake HL Gößner AS (2008) Acetogens: anaerobic gamblers at the oxic-anoxic interface. Microbes and the Environment: Perspectives and Challenges (Liu SJ Drake HL, eds), pp. 59 66. Science Press, Beijing.
15. Drake HL Küsel K (2005) Acetogenic clostridia. Handbook on Clostridia (Dürre P, ed), pp. 719 746. CRC Press, Boca Raton, FL.
16. Drake HL, Küsel K Matthies C (2006) Acetogenic prokaryotes. The Prokaryotes (Balows A, Trüper HG, Dworkin M, Harder W Schleifer KH, eds), pp. 354 420. Springer, New York.
17. Drake HL, Gößner AS Daniel SL (2008) Old acetogens, new light. Incredible Anaerobes: From Physiology to Genomics to Fuels (Wiegel J, Maier RJ Adams MWW, eds), pp. 100 128. New York Academy of Sciences, Boston, MA.
18. Gößner A, Devereux R, Ohnemüller N, Acker G, Stackebrandt E Drake HL (1999) Thermicanus aegyptius gen. nov., sp. nov., isolated from oxic soil, a facultative microaerophile that grows commensally with the thermophilic acetogen Moorella thermoacetica. Appl Environ Microbiol 65 : 5124 5133.
19. Gößner AS, Küsel K, Acker G, Lovell CR Drake HL (2006) Trophic interaction of the aerotolerant anaerobe Clostridium intestinale and the acetogen Sporomusa rhizae sp. nov. isolated from roots of the black needlerush Juncus roemerianus. Microbiology 152 : 1209 1219.
20. Gunsalus RP, Romesser JA Wolfe RS (1978) Preparation of coenzyme-M analogs and their activity in methyl coenzyme-M reductase system of methanobacterium-thermoautotrophicum. Biochemistry 17 : 2374 2377.
21. Hamberger A, Horn MA, Dumont MG, Murrell JC Drake HL (2008) Anaerobic consumers of monosaccharides in a moderately acidic fen. Appl Environ Microbiol 74 : 3112 3120.
22. Horn MA, Matthies C, Küsel K, Schramm A Drake HL (2003) Hydrogenotrophic methanogenesis by moderately acid-tolerant methanogens of a methane-emitting acidic peat. Appl Environ Microbiol 69 : 74 83.
23. Karnholz A, Küsel K, Gößner A, Schramm A Drake HL (2002) Tolerance and metabolic response of acetogenic bacteria toward oxygen. Appl Environ Microbiol 68 : 1005 1009.
24. Kotsyurbenko OR, Chin KJ, Glagolev MV, Stubner S, Simankova MV, Nozhevnikova AN Conrad R (2004) Acetoclastic and hydrogenotrophic methane production and methanogenic populations in an acidic West-Siberian peat bog. Environ Microbiol 6 : 1159 1173.
25. Krumholz LR Bryant MP (1985) Clostridium pfennigii sp. nov. uses methoxyl groups of monobenzoids and produces butyrate. Int J Syst Bacterial 35 : 454 456.
26. Kuhner CH, Frank C, Grießhammer A, Schmittroth M, Acker G, Gößner A Drake HL (1997) Sporomusa silvacetica sp. nov., an acetogenic bacterium isolated from aggregated forest soil. Int J Syst Bacteriol 47 : 352 358.
27. Küsel K Drake HL (1995) Effects of environmental parameters on the formation and turnover of acetate by forest soils. Appl Environ Microbiol 61 : 3667 3675.
28. Küsel K, Pinkart HC, Drake HL Devereux R (1999) Acetogenic and sulfate-reducing bacteria inhabiting the rhizoplane and deep cortex cells of the seagrass Halodule wrightii. Appl Environ Microbiol 65 : 5117 5123.
29. Küsel K, Dorsch T, Acker G, Stackebrandt E Drake HL (2000) Clostridium scatologenes strain SL1 isolated as an acetogenic bacterium from acidic sediments. Int J Syst Evol Microbiol 20 : 537 546.
30. Küsel K, Karnholz A, Trinkwalter T, Devereux R, Acker G Drake HL (2001) Physiological ecology of Clostridium glycolicum RD-1, an aerotolerant acetogen isolated from sea grass roots. Appl Environ Microbiol 67 : 4734 4741.
31. Lee Y-J, Romanek CS Wiegel J (2007) Clostridium aciditolerans sp. nov., an acid-tolerant spore-forming anaerobic bacterium from constructed wetland sediment. Int J Syst Evol Microbiol 57 : 311 315.
32. Liou JS-C, Balkwill DL, Drake GR Tanner RS (2005) Clostridium carboxidovorans sp. nov., a solvent-producing clostridium isolated from an agricultural settling lagoon, and reclassification of the acetogen Clostridium scatologenes strain SL1 as Clostridium drakei sp. nov. Int J Syst Evol Microbiol 55 : 2085 2091.
33. Martin DR, Lundie LL, Kellum R Drake HL (1983) Carbon monoxide-dependent evolution of hydrogen by the homoacetate-fermenting bacterium Clostridium thermoaceticum. Curr Microbiol 8 : 337 340.
34. Metje M Frenzel P (2005) Effect of temperature on anaerobic ethanol oxidation and methanogenesis in acidic peat from a northern wetland. Appl Environ Microbiol 71 : 8191 8200.
35. Müller V, Inkamp F, Rauwolf A, Küsel K Drake HL (2004) Molecular and cellular biology of acetogenic bacteria. Strict and Facultative Anaerobes: Medical and Environmental Aspects (Nakano MM Zuber P, eds), pp. 251 281. Horizon Bioscience, Norfolk.
36. Muyzer G, Teske A, Wirsen CO Jannasch HW (1995) Phylogenetic relationships of Thiomicrospira species and their identification in deep-sea hydrothermal vent samples by denaturing gradient gel electrophoresis of 16S rDNA fragments. Arch Microbiol 164 : 165 172.
37. Nozhevnikova AN, Kotsyurbenko OR Simankova MV (1994) Acetogenesis at low temperature. Acetogenesis (Drake HL, ed), pp. 416 431. Chapman and Hall Inc., New York.
38. Paul S, Küsel K Alewell C (2006) Reduction processes in forest wetlands: tracking down heterogeneity of source/sink functions with a combination of methods. Soil Biol Biochem 38 : 1028 1039.
39. Peters V Conrad R (1995) Methanogenic and other strictly anaerobic bacteria in desert soil and other oxic soils. Appl Environ Microbiol 61 : 1673 1676.
40. Savage DM, Wu Z, Daniel SL, Lundie Jr LL Drake HL (1987) Carbon monoxide-dependent chemolithotrophic growth of Clostridium thermoautotrophicum. Appl Environ Microbiol 53 : 1902 1906.
41. Schink B (1994) Diversity, ecology, and isolation of acetogenic bacteria. Acetogenesis (Drake HL, ed), pp. 197 235. Chapman and Hall Inc., New York.
42. Shannon RD White JR (1994) A three-year study of controls on methane emissions from two Michigan peatlands. Biogeochemistry 27 : 35 60.
43. Shannon RD White JR (1996) The effects of spatial and temporal variations in acetate and sulfate on methane cycling in two Michigan peatlands. Limnol Oceanogr 41 : 435 443.
44. 2-utlizing species. Appl Environ Microbiol 42 : 12 19.
45. Tanner RS Woese CR (1994) A phylogenetic assessment of the acetogens. Acetogenesis (Drake HL, ed), pp. 254 272. Chapman and Hall Inc., New York.
46. Wagner C, Grießhammer A Drake HL (1996) Acetogenic capacities and the anaerobic turnover of carbon in a Kansas prairie soil. Appl Environ Microbiol 62 : 494 500.
47. Wang G Wang DIC (1984) Elucidation of growth inhibition and acetic acid production by Clostridium thermoaceticum. Appl Environ Microbiol 47 : 294 298.
48. Wayne LG, Brenner DJ, Colwell RR et al 1987) International Committee on Systematic Bacteriology. Report of the ad hoc committee on reconciliation of approaches to bacterial systematics. Int J Syst Bacteriol 37 : 463 464.
49. Westermann P (1993) Wetland and swamp microbiology. Aquatic Microbiology, an Ecological Approach (Ford TE, ed.), pp. 215 238. Blackwell Scientific Publications, Oxford.
50. Whitehead TR, Price NP, Drake HL Cotta MA (2008) Catabolic pathway for the production of skatole and indole acetic acid by the acetogen Clostridium drakei, Clostridium scatologenes, and swine manure. Appl Environ Microbiol 74 : 1950 1953.
51. Wiegel J (1994) Acetate and the potential of homoacetogenic bacteria for industrial applications. Acetogenesis (Drake HL, ed), pp. 484 504. Chapman and Hall, Inc., New York.
52. Williams RT Crawford RL (1984) Methane production in Minnesota peatlands. Appl Environ Microbiol 47 : 1266 1271.
53. Wood HG Ljungdahl LG (1991) Autotrophic character of acetogenic bacteria. Variations in Autotrophic Life (Shively JM Barton LL, eds), pp. 201 250. Academic Press, San Diego, CA.