Clostridium aciditolerans sp. nov., an acid-tolerant spore-forming anaerobic bacterium from constructed wetland sediment

International Journal of Systematic and Evolutionary Microbiology

Volumn 57, Issue 2, 2007, Pages 311-315

  Lee, Yong Jin ^a,b   Romanek, Christopher S ^a,b   Wiegel, Juergen ^a  

^a UNIVERSITY OF GEORGIA   (United States)

^b UNIVERSITY OF GEORGIA   (United States)

Author keywords

[No Author keywords available]

Indexed keywords

AMPICILLIN; ARABINOSE; CASAMINO ACID; CELLOBIOSE; CHLORAMPHENICOL; CYTOSINE; ERYTHROMYCIN; FRUCTOSE; GALACTOSE; GENOMIC DNA; GLUCOSAMINE; GLUCOSE; GLUTAMIC ACID; LACTOSE; MALTOSE; MANNOSE; PEPTONE; PYRUVIC ACID; RAFFINOSE; RIBOSE; RIFAMPICIN; RNA 16S; SODIUM CHLORIDE; STREPTOMYCIN; SUCROSE; SULFATE; TETRACYCLINE; XYLOSE;

ACID TOLERANCE; ANAEROBIC BACTERIUM; ANTIBIOTIC SENSITIVITY; ARTICLE; AUTOTROPHY; BACTERIAL CELL; BACTERIAL GROWTH; BACTERIAL STRAIN; BACTERIUM ISOLATE; CLOSTRIDIUM; CLOSTRIDIUM ACIDITOLERANS; CONTROLLED STUDY; ENERGY RESOURCE; FERMENTATION; FIRMICUTES; GENE SEQUENCE; HIGH PERFORMANCE LIQUID CHROMATOGRAPHY; NEW SPECIES; NONHUMAN; NUCLEOTIDE SEQUENCE; PH; PRIORITY JOURNAL; SALINITY; SEDIMENT; SPOROGENESIS; TAXONOMY; TEMPERATURE SENSITIVITY; WETLAND;

ACETIC ACID; ANAEROBIOSIS; ANTI-BACTERIAL AGENTS; BASE COMPOSITION; BUTYRATES; CARBOHYDRATE METABOLISM; CLOSTRIDIUM; DNA, BACTERIAL; DNA, RIBOSOMAL; ETHANOL; GENES, RRNA; GEOLOGIC SEDIMENTS; HYDROGEN-ION CONCENTRATION; MOLECULAR SEQUENCE DATA; PHYLOGENY; PROTEINS; RNA, BACTERIAL; RNA, RIBOSOMAL, 16S; SEQUENCE ANALYSIS, DNA; SODIUM CHLORIDE; SOIL MICROBIOLOGY; SPORES, BACTERIAL; TEMPERATURE; WATER MICROBIOLOGY; WETLANDS;

BACTERIA (MICROORGANISMS); CLOSTRIDIUM; CLOSTRIDIUM DRAKEI; FIRMICUTES;

EID: 33847177680     PISSN: 14665026     EISSN: None     Source Type: Journal    
DOI: 10.1099/ijs.0.64583-0     Document Type: Article

References (26)

1. Collins, M. D., Lawson, P. A., Willems, A., Cordoba, J. J., Fernandez-Garayzabal, J., Garcia, P., Cai, J., Hippe, H. & Farrow, J. A. E. (1994). The phylogeny of the genus Clostridium: proposal of five new genera and eleven new species combinations. Int J Syst Bacteriol 44, 812-826.
2. Doetsch, R. N. (1981). Determinative methods of light microscopy. In Manual Methods for General Bacteriology, pp. 21-23. Edited by P. Gerhardt, R. G. E. Murray, R. N. Costilow, E. W. Nester, W. A. Wood, N. R. Krieg & G. B. Philips. Washington, DC: American Society for Microbiology.
3. Felsenstein, J. (2001). PHYLJP - Phylogeny Inference Package, version 3.6a2.1. Department of Genome Sciences, University of Washington, Seattle, USA.
4. Fitch, W. M. & Margoliash, E. (1967). Construction of phylogenetic trees: a method based on mutation distances as estimated by cytochrome c sequences is of general applicability. Science 155, 279-284.
5. Garrity, G. M., Bell, J. A. & Lilburn, T. G. (2004). Taxonomic outline of the Prokaryotes. In Bergey's Manual of Systematic Bacteriology, 2nd edn, release 5.0. New York: Springer, http:/dx.doi.org /10.1007/ bergeysoutline
6. Hamman, R. & Ottow, I. G. G. (1976). Isolation and characterization of iron-reducing nitrogen-fixing saccharolytic clostridia from gley soils. Soil Biol Biochem 8, 357-364.
7. Horn, M. A., Matthies, C., Küsel, K., Schramm, A. & Drake, H. L. (2003). Hydrogenotrophic methanogenesis by moderately acid-tolerant methanogens of a methane-emitting acidic peat. Appl Environ Microbiol 69, 74-83.
8. Jukes, T. H. & Cantor, C. R. (1969). Evolution of protein molecules. In Mammalian Protein Metabolism, vol. 3, pp. 21-132. Edited by H. N. Munro. New York: Academic Press.
9. 2-fixing clostridia isolated from acidic forest soil and litter. Int J Syst Evol Microbiol 50, 873-881.
10. Küsel, K, Dorsch, T., Acker, G., Stackebrandt, E & Drake, H. L. (2000). Clostridium scatologenes strain SL1 isolated as an acetogenic bacterium from acidic sediments. Int J Syst Evol Microbiol 50, 537-546.
11. Lane, D. J. (1991). 16S/23S rRNA sequencing. In Nucleic Acid Techniques in Bacterial Systematics, pp. 115-175. Edited by E. Stackebrandt & M. Goodfellow. New York: Wiley.
12. Lee, Y.-J. (2005). Microbial diversity in a constructed wetland system for treatment of acid sulfate water. PhD thesis. University of Georgia, Athens, GA.
13. Lee, Y.-J., Wagner, I. D., Brice, M. E., Kevbrin, V. V., Mills, G. L., Romanek, C. S. & Wiegel, J. (2005). Thermosediminibacter oceani gen. nov., sp. nov. and Thermosediminibacter litoriperuensis sp. nov., new anaerobic thermophilic bacteria isolated from Peru Margin. Extremophiles 9, 375-383.
14. Liou, J. S.-C., Balkwill, D. L., Drake, G. R. & Tanner, R. S. (2005). Clostridium carboxidivorans sp. nov., a solvent-producing clostridium isolated from an agricultural settling lagoon, and reclassification of the acetogen Clostridium scatologenes strain SL1 as Clostridium drakei sp. nov. Int J Syst Evol Microbiol 55, 2085-2091.
15. Ljungdahl, L. G. & Wiegel, J. (1986). Anaerobic fermentations. In Manual of Industrial Microbiology and Biotechnology, pp. 84-96. Edited by A.. L. Demain & N. A. Solomon. Washington, DC: American Society for Microbiology.
16. Mesbah, M., Premachandran, U. & Whitman, W. B. (1989). Precise measurement of the G + C content of deoxyribonucleic acid by high-performance liquid chromatography. Int J Syst Bacteriol 39, 159-167.
17. Saitou, N. & Nei, M. (1987). The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4, 406-425.
18. Smibert, R. M. & Krieg, N. R. (1994). Phenotypic characterization. In Methods for General and Molecular Bacteriology, pp. 607-654. Edited by P. Gerhardt, R. G. E. Murray, W. A. Wood & N. R. Krieg. Washington, DC: American Society for Microbiology.
19. Thomas, R. C. (2003). Passive treatment of low pH, ferric iron-dominated acid rock drainage. PhD thesis. University of Georgia, Athens, GA.
20. Thompson, J. D., Gibson, T. J., Plewniak, F., Jeanmougin, F. & Higgins, D. G. (1997). The CLUSTAL_X windows interface: flexible strategies for multiple sequence alignment aided by quality analysis tools. Nucleic Acids Res 25, 4876-4882.
21. Widdel, F. & Bak, F. (1992). Gram-negative mesophilic sulfate-reducing bacteria. In The Prokaryotes, vol. 4, pp. 3352-3378. Edited by A. Balows, H. G. Trüper, M. Dworkin, W. Harder & K. H. Schleifer. New York: Springer.
22. Wiegel, J. (1981). Distinction between the Gram reaction and the Gram type of bacteria. Int J Syst Bacteriol 31, 88.
23. Wiegel, J. (1998). Anaerobic alkalithermophiles, a novel group of extremophiles. Extremophiles 2, 257-267.
24. Wiegel, J., Tanner, R. & Rainey, F. A. (2005). An introduction to the Family Clostridiaceae. In The Prokaryotes: a Handbook on the Biology of Bacteria. Vol. 4: Bacteria: Firmicutes, Cyanobacteria, 3rd edn. release 3.20. New York: Springer. http://141.150.157.117:8080/prokPUB/metadata/ releases/3.20.htm#
25. Williams, R. T. & Crawford, R. L. (1985). Methanogenic bacteria, including an acid-tolerant strain, from peatlands. Appl Environ Microbiol 50, 1542-1544.
26. Wortman, A. T., Voelz, H., Lantz, R. C. & Bissonnette, G. K (1986). Effect of acid mine water on Escherichia coli: structural damage. Curr Microbiol 14, 1-5.