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Volumn 31, Issue 10, 2008, Pages 785-791

Detecting positively selected codons in the glycoprotein of spring viraemia of carp virus (SVCV) isolates from the USA and China

Author keywords

Carp; Glycoprotein; Positive selection; Rhabdovirus; SVCV

Indexed keywords

AMINO ACID; GLYCOPROTEIN;

EID: 50649094702     PISSN: 01407775     EISSN: 13652761     Source Type: Journal    
DOI: 10.1111/j.1365-2761.2008.00938.x     Document Type: Article
Times cited : (8)

References (31)
  • 3
    • 11844296796 scopus 로고    scopus 로고
    • First report of spring viremia of carp virus (SVCV) in wild common carp in North America
    • Dikkeboom A.L., Radi C. Toohey-Kurth K. (2004) First report of spring viremia of carp virus (SVCV) in wild common carp in North America. Journal of Aquatic Animal Health 16, 169 178.
    • (2004) Journal of Aquatic Animal Health , vol.16 , pp. 169-178
    • Dikkeboom, A.L.1    Radi, C.2    Toohey-Kurth, K.3
  • 4
    • 0001445199 scopus 로고    scopus 로고
    • Spring viremia of carp and other viral diseases of warm-water fish
    • In: Vol. 3 (. ed. by. P.T.K. Woo. D.W. Bruno. pp. CAB International, Oxon.
    • Fijan N. (1999) Spring viremia of carp and other viral diseases of warm-water fish. In : Fish Diseases and Disorders, Vol. 3 (ed. by P.T.K. Woo D.W. Bruno pp. 177 244. CAB International, Oxon.
    • (1999) Fish Diseases and Disorders , pp. 177-244
    • Fijan, N.1
  • 5
    • 0000235249 scopus 로고
    • Isolation of the viral causative agent from the acute form of infectious dropsy of carp
    • Fijan N., Petrinec Z., Sulimanovic D. Zwillenberg L.O. (1971) Isolation of the viral causative agent from the acute form of infectious dropsy of carp. Veterinarski Arhiv 41, 125 138.
    • (1971) Veterinarski Arhiv , vol.41 , pp. 125-138
    • Fijan, N.1    Petrinec, Z.2    Sulimanovic, D.3    Zwillenberg, L.O.4
  • 6
    • 0035993631 scopus 로고    scopus 로고
    • Applications of selective neutrality tests to molecular ecology
    • Ford M.J. (2002) Applications of selective neutrality tests to molecular ecology. Molecular Ecology 11, 1245 1262.
    • (2002) Molecular Ecology , vol.11 , pp. 1245-1262
    • Ford, M.J.1
  • 7
    • 0036753390 scopus 로고    scopus 로고
    • First report of spring viremia of carp virus (SVCV) in North America
    • Goodwin A.E. (2002) First report of spring viremia of carp virus (SVCV) in North America. Journal of Aquatic Animal Health 14, 161 164.
    • (2002) Journal of Aquatic Animal Health , vol.14 , pp. 161-164
    • Goodwin, A.E.1
  • 8
    • 0016804021 scopus 로고
    • Physicochemical and serological characterization of 5 rhabdoviruses infecting fish
    • Hill B.J., Underwood B.O., Smale C.J. Brown F. (1975) Physicochemical and serological characterization of 5 rhabdoviruses infecting fish. Journal of General Virology 27, 369 378.
    • (1975) Journal of General Virology , vol.27 , pp. 369-378
    • Hill, B.J.1    Underwood, B.O.2    Smale, C.J.3    Brown, F.4
  • 9
    • 0037139596 scopus 로고    scopus 로고
    • Determination of the complete genomic sequence and analysis of the gene products of the virus of spring viremia of carp, a fish rhabdovirus
    • Hoffmann B., Schutze H. Mettenleiter T.C. (2002) Determination of the complete genomic sequence and analysis of the gene products of the virus of spring viremia of carp, a fish rhabdovirus. Virus Research 84, 89 100.
    • (2002) Virus Research , vol.84 , pp. 89-100
    • Hoffmann, B.1    Schutze, H.2    Mettenleiter, T.C.3
  • 10
    • 0040771786 scopus 로고
    • Nucleotide substitution at major histocompatibility complex class II loci: Evidence for overdominant selection
    • Hughes A. Nei M. (1989) Nucleotide substitution at major histocompatibility complex class II loci: evidence for overdominant selection. Proceeding of the National Academy of Sciences USA 86, 958 962.
    • (1989) Proceeding of the National Academy of Sciences USA , vol.86 , pp. 958-962
    • Hughes, A.1    Nei, M.2
  • 11
    • 0000391514 scopus 로고
    • SVCV and PFR viruses: Serological examination of 22 isolates indicates close relationship between the two fish rhabdoviruses
    • In: ed. by. W. Ahne. E. Kurstak. pp. Springer, Berlin.
    • Jorgensen P.E.V., Olesen N.J., Ahne W. Lorenzen N. (1989) SVCV and PFR viruses: serological examination of 22 isolates indicates close relationship between the two fish rhabdoviruses. In : Viruses of Lower Vertebrates (ed. by W. Ahne E. Kurstak pp. 349 366. Springer, Berlin.
    • (1989) Viruses of Lower Vertebrates , pp. 349-366
    • Jorgensen, P.E.V.1    Olesen, N.J.2    Ahne, W.3    Lorenzen, N.4
  • 13
    • 3242810318 scopus 로고    scopus 로고
    • MEGA3.1: Integrated software for molecular evolutionary genetics analysis and sequence alignment
    • Kumar S., Tamura K. Nei M. (2004) MEGA3.1: integrated software for molecular evolutionary genetics analysis and sequence alignment. Briefings in Bioinformatics 5, 150 163.
    • (2004) Briefings in Bioinformatics , vol.5 , pp. 150-163
    • Kumar, S.1    Tamura, K.2    Nei, M.3
  • 14
    • 5444275785 scopus 로고    scopus 로고
    • Isolation of spring of carp virus (SVCV) from cultured koi (Cyprinus carpio koi) and common carp (Cyprinus carpio carpio) in P.R. China
    • Liu H., Gao L., Shi X., Gu T., Jiang Y. Chen H. (2004) Isolation of spring of carp virus (SVCV) from cultured koi (Cyprinus carpio koi) and common carp (Cyprinus carpio carpio) in P.R. China. Bulletin of the European Association of Fish Pathologists 24, 194 198.
    • (2004) Bulletin of the European Association of Fish Pathologists , vol.24 , pp. 194-198
    • Liu, H.1    Gao, L.2    Shi, X.3    Gu, T.4    Jiang, Y.5    Chen, H.6
  • 16
    • 39149093657 scopus 로고    scopus 로고
    • Detecting molecular adaptation at individual codons in the glycoprotein gene of the geographically diversified infectious hematopoietic necrosis virus, a fish rhabdovirus
    • Padhi A. Verghese B. (2008a) Detecting molecular adaptation at individual codons in the glycoprotein gene of the geographically diversified infectious hematopoietic necrosis virus, a fish rhabdovirus. Virus Research 132, 229 236.
    • (2008) Virus Research , vol.132 , pp. 229-236
    • Padhi, A.1    Verghese, B.2
  • 17
    • 38649135061 scopus 로고    scopus 로고
    • Positive natural selection in the evolution of human metapneumovirus attachment glycoprotein
    • Padhi A. Verghese B. (2008b) Positive natural selection in the evolution of human metapneumovirus attachment glycoprotein. Virus Research 131, 121 131.
    • (2008) Virus Research , vol.131 , pp. 121-131
    • Padhi, A.1    Verghese, B.2
  • 18
    • 33847742620 scopus 로고    scopus 로고
    • Pattern of nucleotide substitution and divergence of prophenoloxidase in decapods
    • Padhi A., Verghese B., Vaid A. Otta S.K. (2007a) Pattern of nucleotide substitution and divergence of prophenoloxidase in decapods. Fish and Shellfish Immunology 22, 628 640.
    • (2007) Fish and Shellfish Immunology , vol.22 , pp. 628-640
    • Padhi, A.1    Verghese, B.2    Vaid, A.3    Otta, S.K.4
  • 20
    • 0031773680 scopus 로고    scopus 로고
    • Modeltest: Testing the model of DNA substitution
    • Posada D. Crandall K. (1998) Modeltest: testing the model of DNA substitution. Bioinformatics 14, 817 818.
    • (1998) Bioinformatics , vol.14 , pp. 817-818
    • Posada, D.1    Crandall, K.2
  • 21
    • 0347513220 scopus 로고    scopus 로고
    • DnaSP, DNA polymorphism analyses by the coalescent and other methods
    • Rozas J., Sánchez-DelBarrio J.C., Messeguer X. Rozas R. (2003) DnaSP, DNA polymorphism analyses by the coalescent and other methods. Bioinformatics 19, 2496 2497.
    • (2003) Bioinformatics , vol.19 , pp. 2496-2497
    • Rozas, J.1    Sánchez-Delbarrio, J.C.2    Messeguer, X.3    Rozas, R.4
  • 22
    • 0242417467 scopus 로고    scopus 로고
    • Nucleotide sequence analysis of the glycoprotein gene of putative spring viraemia of carp virus and pike fry rhabdovirus isolates reveals four genogroups
    • Stone D.M., Ahne W., Denham K.L., Dixon P.F., Liu C.T., Sheppard A.M., Taylor G.R. Way K. (2003) Nucleotide sequence analysis of the glycoprotein gene of putative spring viraemia of carp virus and pike fry rhabdovirus isolates reveals four genogroups. Diseases of Aquatic Organisms 53, 203 210.
    • (2003) Diseases of Aquatic Organisms , vol.53 , pp. 203-210
    • Stone, D.M.1    Ahne, W.2    Denham, K.L.3    Dixon, P.F.4    Liu, C.T.5    Sheppard, A.M.6    Taylor, G.R.7    Way, K.8
  • 23
    • 0037230001 scopus 로고    scopus 로고
    • Pervasive adaptive evolution in mammalian fertilization proteins
    • Swanson W., Nielsen R. Yang Q. (2003) Pervasive adaptive evolution in mammalian fertilization proteins. Molecular Biology and Evolution 20, 18 20.
    • (2003) Molecular Biology and Evolution , vol.20 , pp. 18-20
    • Swanson, W.1    Nielsen, R.2    Yang, Q.3
  • 25
    • 34547153729 scopus 로고    scopus 로고
    • Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China
    • Teng Y., Liu H., Lu J.Q., Fan W.H., Zhang Q.Y. Qin Q.W. (2007) Characterization of complete genome sequence of the spring viremia of carp virus isolated from common carp (Cyprinus carpio) in China. Archives of Virology 152, 1457 1465.
    • (2007) Archives of Virology , vol.152 , pp. 1457-1465
    • Teng, Y.1    Liu, H.2    Lu, J.Q.3    Fan, W.H.4    Zhang, Q.Y.5    Qin, Q.W.6
  • 26
    • 34248562040 scopus 로고    scopus 로고
    • Comparison of multiple genes of spring viremia of carp viruses isolated in the United States
    • Warg J.V., Dikkeboom A.L., Goodwin A.E., Snekvik K. Whitney J. (2007) Comparison of multiple genes of spring viremia of carp viruses isolated in the United States. Virus Genes 35, 87 95.
    • (2007) Virus Genes , vol.35 , pp. 87-95
    • Warg, J.V.1    Dikkeboom, A.L.2    Goodwin, A.E.3    Snekvik, K.4    Whitney, J.5
  • 28
    • 0034848170 scopus 로고    scopus 로고
    • DAMBE: Data analysis in molecular biology and evolution
    • Xia X. Xie Z. (2001) DAMBE: data analysis in molecular biology and evolution. Journal of Heredity 92, 371 373.
    • (2001) Journal of Heredity , vol.92 , pp. 371-373
    • Xia, X.1    Xie, Z.2
  • 29
    • 0030683599 scopus 로고    scopus 로고
    • PAML: A program package for phylogenetic analysis by maximum likelihood
    • Yang Z. (1997) PAML: a program package for phylogenetic analysis by maximum likelihood. Computer Applications and Bioscience 13, 555 556.
    • (1997) Computer Applications and Bioscience , vol.13 , pp. 555-556
    • Yang, Z.1
  • 30
    • 0034097381 scopus 로고    scopus 로고
    • Codon-substitution models for heterogeneous selection pressures at amino acid sites
    • Yang Z., Nielsen R., Goldman N. Pederson A. (2000) Codon-substitution models for heterogeneous selection pressures at amino acid sites. Genetics 155, 431 449.
    • (2000) Genetics , vol.155 , pp. 431-449
    • Yang, Z.1    Nielsen, R.2    Goldman, N.3    Pederson, A.4
  • 31
    • 16344378246 scopus 로고    scopus 로고
    • Bayes empirical Bayes inference of amino acid sites under positive selection
    • Yang Z., Wong W.S. Nielsen R. (2005) Bayes empirical Bayes inference of amino acid sites under positive selection. Molecular Biology and Evolution 22, 1107 1118.
    • (2005) Molecular Biology and Evolution , vol.22 , pp. 1107-1118
    • Yang, Z.1    Wong, W.S.2    Nielsen, R.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.