메뉴 건너뛰기




Volumn 24, Issue 17, 2008, Pages 1858-1864

Artificial neural network for prediction of antigenic activity for a major conformational epitope in the hepatitis C virus NS3 protein

Author keywords

[No Author keywords available]

Indexed keywords

NONSTRUCTURAL PROTEIN 3; RECOMBINANT PROTEIN;

EID: 50549101469     PISSN: 13674803     EISSN: 14602059     Source Type: Journal    
DOI: 10.1093/bioinformatics/btn339     Document Type: Article
Times cited : (12)

References (36)
  • 1
    • 34250679750 scopus 로고    scopus 로고
    • Epidemiology of hepatitis C virus infection
    • Alter,M.J. (2007) Epidemiology of hepatitis C virus infection. World J. Gastroenterol., 13, 2436-2441.
    • (2007) World J. Gastroenterol , vol.13 , pp. 2436-2441
    • Alter, M.J.1
  • 2
    • 50549088379 scopus 로고    scopus 로고
    • Arbib,M.A. (2003) The elements of brain theory and neural networks. In Arbib,M.A. (ed.) The Handbook of Brain Theory and Neural Networks. 2nd ad. The MIT Press, Cambridge, Massachusetts, pp. 3-23.
    • Arbib,M.A. (2003) The elements of brain theory and neural networks. In Arbib,M.A. (ed.) The Handbook of Brain Theory and Neural Networks. 2nd ad. The MIT Press, Cambridge, Massachusetts, pp. 3-23.
  • 3
    • 0026520770 scopus 로고
    • Methods and algorithms for statistical analysis of protein sequences
    • Brendel,V. et al. (1992) Methods and algorithms for statistical analysis of protein sequences. Proc. Natl Acad Sci. USA, 89, 2002-2006.
    • (1992) Proc. Natl Acad Sci. USA , vol.89 , pp. 2002-2006
    • Brendel, V.1
  • 4
    • 28444470196 scopus 로고    scopus 로고
    • Immunoreactivity of HCV/HBV epitopes displayed in an epitope-presenting system
    • Chen,Y. et al. (2006) Immunoreactivity of HCV/HBV epitopes displayed in an epitope-presenting system. Mol. Immunol., 43 436-442.
    • (2006) Mol. Immunol , vol.43 , pp. 436-442
    • Chen, Y.1
  • 5
    • 0025217987 scopus 로고
    • Hepatitis C virus: The major causative agent of viral non-A, non-B hepatitis
    • Choo,Q.L. et al. (1990) Hepatitis C virus: The major causative agent of viral non-A, non-B hepatitis. Br. Med. Bull., 46, 423-441.
    • (1990) Br. Med. Bull , vol.46 , pp. 423-441
    • Choo, Q.L.1
  • 7
    • 33746218584 scopus 로고    scopus 로고
    • MHC-BPS: MHC-binder prediction server for identifying peptides of flexible lengths from sequence-derived physicochemical properties
    • Cui,J. et al. (2006) MHC-BPS: MHC-binder prediction server for identifying peptides of flexible lengths from sequence-derived physicochemical properties. Immunogenetics, 58, 607-613.
    • (2006) Immunogenetics , vol.58 , pp. 607-613
    • Cui, J.1
  • 8
    • 33748792816 scopus 로고    scopus 로고
    • Prediction of MHC-binding peptides of flexible lengths from sequence-derived structural and physicochemical properties
    • Cui,J. et al. (2007) Prediction of MHC-binding peptides of flexible lengths from sequence-derived structural and physicochemical properties. Mol. Immunol., 44, 866-877.
    • (2007) Mol. Immunol , vol.44 , pp. 866-877
    • Cui, J.1
  • 9
    • 0022510143 scopus 로고    scopus 로고
    • (1086) Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins
    • Engelman,D.M. et al. (1086) Identifying nonpolar transbilayer helices in amino acid sequences of membrane proteins. Annu. Rev. Biophys. Biophys. Chem., 15, 321-353.
    • Annu. Rev. Biophys. Biophys. Chem , vol.15 , pp. 321-353
    • Engelman, D.M.1
  • 10
    • 14844335718 scopus 로고    scopus 로고
    • Directed molecular evolution by machine learning and the influence of nonlinear interactions
    • Fox,R. (2005) Directed molecular evolution by machine learning and the influence of nonlinear interactions. J. Theor. Biol., 234:187-199.
    • (2005) J. Theor. Biol , vol.234 , pp. 187-199
    • Fox, R.1
  • 11
    • 0031473847 scopus 로고    scopus 로고
    • SWISS-MODFA, and Swiss-PdbViewer: An environment for comparative protein modeling
    • Guex,N. and Peitsch,M.C. (1997) SWISS-MODFA, and Swiss-PdbViewer: An environment for comparative protein modeling. Electrophoresis, 18, 2714-2723.
    • (1997) Electrophoresis , vol.18 , pp. 2714-2723
    • Guex, N.1    Peitsch, M.C.2
  • 12
    • 33644866065 scopus 로고    scopus 로고
    • A multiobjective evolutionary method for the design of peptidic mimotopes
    • Hohm,T. et al. (2006) A multiobjective evolutionary method for the design of peptidic mimotopes. J. Comput. Biol., 13, 113-125.
    • (2006) J. Comput. Biol , vol.13 , pp. 113-125
    • Hohm, T.1
  • 13
    • 0036771399 scopus 로고    scopus 로고
    • Hepatitis C virus nonstructural 3 protein: Recombinant NS3 protein of the Thai isolates as an antigen in a diagnostic assay
    • Kanistanon,D. et al. (2002) Hepatitis C virus nonstructural 3 protein: Recombinant NS3 protein of the Thai isolates as an antigen in a diagnostic assay. Asian Pac. J. Allergy Immunol., 20, 161-166.
    • (2002) Asian Pac. J. Allergy Immunol , vol.20 , pp. 161-166
    • Kanistanon, D.1
  • 14
    • 0028872981 scopus 로고
    • Linear B-cell epitopes of the NS3-NS4-NS5 proteins of the hepatitis C virus as modeled with synthetic peptides
    • Khudyakov,Y.E. et al. (1995) Linear B-cell epitopes of the NS3-NS4-NS5 proteins of the hepatitis C virus as modeled with synthetic peptides. Virology, 206, 666-672.
    • (1995) Virology , vol.206 , pp. 666-672
    • Khudyakov, Y.E.1
  • 15
    • 50549083821 scopus 로고    scopus 로고
    • Khudyakov,Y.E. et al. (2002) Impact of sequence heterogeneity on antigenic properties of the Hepatitis C virus (HCV) proteins. In Margollis,H.S. et al. (eds) Proceedings of the 10th International Symposium on Viral Hepatitis and Liver Disease. International Medical Press, London, M pp. 381-385.
    • Khudyakov,Y.E. et al. (2002) Impact of sequence heterogeneity on antigenic properties of the Hepatitis C virus (HCV) proteins. In Margollis,H.S. et al. (eds) Proceedings of the 10th International Symposium on Viral Hepatitis and Liver Disease. International Medical Press, London, M pp. 381-385.
  • 16
    • 0033567326 scopus 로고    scopus 로고
    • Prediction of three-dimensional structure and mapping of conformational epitopes of envelope glycoprotein of Japanese encephalitis virus
    • Kolaskar,A.S. and Kulkarni-Kale,U. (1999) Prediction of three-dimensional structure and mapping of conformational epitopes of envelope glycoprotein of Japanese encephalitis virus, Virology, 261, 31-42.
    • (1999) Virology , vol.261 , pp. 31-42
    • Kolaskar, A.S.1    Kulkarni-Kale, U.2
  • 17
    • 0025605617 scopus 로고
    • A semi-empirical method for prediction of antigenic determinants on protein antigens
    • Kolaskar,A.S. and Tongaonkar,P.C. (1990) A semi-empirical method for prediction of antigenic determinants on protein antigens. Febs Lett. 276, 172-174.
    • (1990) Febs Lett , vol.276 , pp. 172-174
    • Kolaskar, A.S.1    Tongaonkar, P.C.2
  • 18
    • 23144457577 scopus 로고    scopus 로고
    • CEP: A conformational epitope prediction server
    • Kulkarni-Kale,U. et al. (2005) CEP: A conformational epitope prediction server. Nucleic Acids Res., 33, W168-W171.
    • (2005) Nucleic Acids Res , vol.33
    • Kulkarni-Kale, U.1
  • 19
    • 23744475276 scopus 로고    scopus 로고
    • Design of novel conformational and genotype-specific antigens for improving sensitivity of immunoassays for hepatitis C virus-specific antibodies
    • Lin,S. et al. (2005) Design of novel conformational and genotype-specific antigens for improving sensitivity of immunoassays for hepatitis C virus-specific antibodies. J. Clin. Microbiol., 43 3917-3924.
    • (2005) J. Clin. Microbiol , vol.43 , pp. 3917-3924
    • Lin, S.1
  • 20
    • 29644440585 scopus 로고    scopus 로고
    • Sensitivity of second-generation enzyme immunoassay for detection of hepatitis C virus infection among oncology patients
    • Macedo de Olivera,A. et al. (2006) Sensitivity of second-generation enzyme immunoassay for detection of hepatitis C virus infection among oncology patients. J. Clin. Virol., 35, 21-25.
    • (2006) J. Clin. Virol , vol.35 , pp. 21-25
    • Macedo de Olivera, A.1
  • 21
    • 0032387825 scopus 로고    scopus 로고
    • Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models
    • Mamitsuka,H. (1998) Predicting peptides that bind to MHC molecules using supervised learning of hidden Markov models. Proteins, 33, 460-474.
    • (1998) Proteins , vol.33 , pp. 460-474
    • Mamitsuka, H.1
  • 22
    • 84984567059 scopus 로고    scopus 로고
    • Characterization of monoclonal antibodies against hepatitis C virus nonstructural protein 3: Different antigenic determinants from human B cells
    • Ou-Yang,P. et al. (1999) Characterization of monoclonal antibodies against hepatitis C virus nonstructural protein 3: Different antigenic determinants from human B cells. J. Med. Virol., 57, 345-350.
    • (1999) J. Med. Virol , vol.57 , pp. 345-350
    • Ou-Yang, P.1
  • 23
    • 0032422864 scopus 로고    scopus 로고
    • Use of propensities of amino acids to the local structural environments to understand effect of substitution mutations on protein stability
    • Reddy,B.V. et al. (1998) Use of propensities of amino acids to the local structural environments to understand effect of substitution mutations on protein stability. Protein Eng., 11, 1137-1145.
    • (1998) Protein Eng , vol.11 , pp. 1137-1145
    • Reddy, B.V.1
  • 25
    • 0022471098 scopus 로고
    • Learning representations of back-propagation effos
    • Rumelhart,D.E. et al. (1986a) Learning representations of back-propagation effos. Nature, 323, 533-536.
    • (1986) Nature , vol.323 , pp. 533-536
    • Rumelhart, D.E.1
  • 26
    • 0000646059 scopus 로고
    • Learning internal representations by error propagation
    • Rumelhart,D.E. and Mcclelland,J.L, eds, MIT, Cambridge
    • Rumelhart,D.E. et al. (1986b) Learning internal representations by error propagation. In Rumelhart,D.E. and Mcclelland,J.L. (eds) Parallel Distributed Processing. Vol. 1. MIT, Cambridge,
    • (1986) Parallel Distributed Processing , vol.1
    • Rumelhart, D.E.1
  • 27
    • 0031735526 scopus 로고    scopus 로고
    • Artificial neural networks for computer-based molecular design
    • Schneider,C. and Wrede,P. (1998) Artificial neural networks for computer-based molecular design. Prog. Biophys. Mol. Biol., 70 175-222.
    • (1998) Prog. Biophys. Mol. Biol , vol.70 , pp. 175-222
    • Schneider, C.1    Wrede, P.2
  • 28
    • 0027477526 scopus 로고
    • Structural analysis b ased on state-space modeling
    • Stultz,C.M. et al. (1993) Structural analysis b ased on state-space modeling. Protein Sci., 2, 305-314.
    • (1993) Protein Sci , vol.2 , pp. 305-314
    • Stultz, C.M.1
  • 29
    • 77956716177 scopus 로고    scopus 로고
    • Protein structural biology in biomedical research
    • Allewell,N. and Woodward,C, eds, JAI Press, Greenwich, pp
    • Stultz,C.M. et al. (1997) Protein structural biology in biomedical research. In Allewell,N. and Woodward,C. (eds) Predicting Protein Structure with Probabilistic Models. JAI Press, Greenwich, pp. 447-506.
    • (1997) Predicting Protein Structure with Probabilistic Models , pp. 447-506
    • Stultz, C.M.1
  • 30
    • 14644395498 scopus 로고    scopus 로고
    • An artificial neural network for predicting the incidence of radiation pneumonitis
    • Su,M. et al. (2005) An artificial neural network for predicting the incidence of radiation pneumonitis. Med. Phys., 32, 318-325.
    • (2005) Med. Phys , vol.32 , pp. 318-325
    • Su, M.1
  • 31
    • 6044244849 scopus 로고    scopus 로고
    • A comparison of methods for modeling quantitative structure-activity relationships
    • Sutherland,J.J. et al. (2004) A comparison of methods for modeling quantitative structure-activity relationships. J. Med. Chem., 47, 5541-5554.
    • (2004) J. Med. Chem , vol.47 , pp. 5541-5554
    • Sutherland, J.J.1
  • 32
    • 50549098052 scopus 로고    scopus 로고
    • Introduction
    • Swingler,K, ed, Mourgan Kaufman Publishers Inc, San Francisco, pp
    • Swingler,K. (ed.) (1996) Introduction. In Applying Neural Networks: A practical Guide. Mourgan Kaufman Publishers Inc., San Francisco, pp 3-20.
    • (1996) Applying Neural Networks: A practical Guide , pp. 3-20
  • 33
    • 0028181528 scopus 로고
    • Protein classification by stochastic modeling and optimal filtering of amino-acid sequences
    • White,J.V. et al. (1994) Protein classification by stochastic modeling and optimal filtering of amino-acid sequences. Math. Biosci. 119, 35-75.
    • (1994) Math. Biosci , vol.119 , pp. 35-75
    • White, J.V.1
  • 34
    • 31344482362 scopus 로고    scopus 로고
    • Expression and immunoreactivity of HCV/ HBV epitopes
    • Xiong,X.Y. et al. (2005) Expression and immunoreactivity of HCV/ HBV epitopes. World J. Gastroenterol., 11, 6440-6444.
    • (2005) World J. Gastroenterol , vol.11 , pp. 6440-6444
    • Xiong, X.Y.1
  • 35
    • 0033571623 scopus 로고    scopus 로고
    • Molecular views of viral polyprotein processing revealed by the crystal structure of the hepatitis C virus bifunctional protease-helicase
    • Yao,N. et al. (1999) Molecular views of viral polyprotein processing revealed by the crystal structure of the hepatitis C virus bifunctional protease-helicase. Structure, 7, 1353-1363.
    • (1999) Structure , vol.7 , pp. 1353-1363
    • Yao, N.1
  • 36
    • 23144455463 scopus 로고    scopus 로고
    • MULTIPRED: A computational system for prediction of promiscuous HLA binding peptides
    • Zhang,G.L. et al. (2005) MULTIPRED: A computational system for prediction of promiscuous HLA binding peptides. Nucleic Acids Res. 33, W172-W179.
    • (2005) Nucleic Acids Res , vol.33
    • Zhang, G.L.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.