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Volumn 20, Issue 14, 2004, Pages 2309-2311

MuSiC: A tool for multiple sequence alignment with constraints

Author keywords

[No Author keywords available]

Indexed keywords

3' UNTRANSLATED REGION; ACCESS TO INFORMATION; ALGORITHM; AMINO ACID SEQUENCE; ARTICLE; COMPUTER INTERFACE; COMPUTER LANGUAGE; COMPUTER PROGRAM; DNA SEQUENCE; GENE SEQUENCE; INTERNET; NONHUMAN; NUCLEOTIDE SEQUENCE; PRIORITY JOURNAL; RNA SEQUENCE; SARS CORONAVIRUS; SEQUENCE ALIGNMENT; SEQUENCE ANALYSIS; VIRUS GENOME;

EID: 5044241491     PISSN: 13674803     EISSN: 13674811     Source Type: Journal    
DOI: 10.1093/bioinformatics/bth220     Document Type: Article
Times cited : (25)

References (11)
  • 2
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    • MATCH-BOX: A fundamentally new algorithm for the simultaneous alignment of several protein sequences
    • Depiereux,E. and Feytmans,E. (1992) MATCH-BOX: a fundamentally new algorithm for the simultaneous alignment of several protein sequences. Comput. Appl. Biosci., 8, 501-509.
    • (1992) Comput. Appl. Biosci. , vol.8 , pp. 501-509
    • Depiereux, E.1    Feytmans, E.2
  • 3
    • 0037100671 scopus 로고    scopus 로고
    • MAFFT: A novel method for rapid multiple sequence alignment based on fast Fourier transform
    • Katoh,K., Misawa,K., Kuma,K. and Miyata,T. (2002) MAFFT: a novel method for rapid multiple sequence alignment based on fast Fourier transform. Nucleic Acids Res., 30, 3059-3066.
    • (2002) Nucleic Acids Res. , vol.30 , pp. 3059-3066
    • Katoh, K.1    Misawa, K.2    Kuma, K.3    Miyata, T.4
  • 4
    • 0034623005 scopus 로고    scopus 로고
    • T-Coffee: A novel method for fast and accurate multiple sequence alignment
    • Notredame,C., Higgins,D.G. and Heringa,J. (2000) T-Coffee: a novel method for fast and accurate multiple sequence alignment. J. Mol. Biol., 302, 205-217.
    • (2000) J. Mol. Biol. , vol.302 , pp. 205-217
    • Notredame, C.1    Higgins, D.G.2    Heringa, J.3
  • 5
    • 0033524952 scopus 로고    scopus 로고
    • A dynamic programming algorithm for RNA structure prediction including pseudoknots
    • Rivas,E. and Eddy,S. (1999) A dynamic programming algorithm for RNA structure prediction including pseudoknots. J. Mol. Biol., 285, 2053-2068.
    • (1999) J. Mol. Biol. , vol.285 , pp. 2053-2068
    • Rivas, E.1    Eddy, S.2
  • 8
    • 0028679124 scopus 로고
    • Motif-biased protein sequence alignment
    • Taylor,W.R. (1994) Motif-biased protein sequence alignment. J. Comput. Biol., 1, 297-310.
    • (1994) J. Comput. Biol. , vol.1 , pp. 297-310
    • Taylor, W.R.1
  • 9
    • 0034255358 scopus 로고    scopus 로고
    • DbClustal: Rapid and reliable global multiple alignments of protein sequences detected by database searches
    • Thompson,J.D., Plewniak,F., Thierry,J.-C. and Poch,O. (2000) DbClustal: rapid and reliable global multiple alignments of protein sequences detected by database searches. Nucleic Acids Res., 28, 2919-2926.
    • (2000) Nucleic Acids Res. , vol.28 , pp. 2919-2926
    • Thompson, J.D.1    Plewniak, F.2    Thierry, J.-C.3    Poch, O.4
  • 10
    • 0032827591 scopus 로고    scopus 로고
    • A phylogenetically conserved hairpin-type 39 untranslated region pseudoknot functions in coronavirus RNA replication
    • Williams,G.D., Chang,R.-Y. and Brian,D.A. (1999) A phylogenetically conserved hairpin-type 39 untranslated region pseudoknot functions in coronavirus RNA replication. J. Virol., 73, 8349-8355.
    • (1999) J. Virol. , vol.73 , pp. 8349-8355
    • Williams, G.D.1    Chang, R.-Y.2    Brian, D.A.3
  • 11
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    • Efficient algorithms for constrained sequence alignment problems
    • Master's Thesis, Department of Computer Science and Information Management, Providence University, Taiwan, ROC
    • Yu,C.T. (2003) Efficient algorithms for constrained sequence alignment problems. Master's Thesis, Department of Computer Science and Information Management, Providence University, Taiwan, ROC.
    • (2003)
    • Yu, C.T.1


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.