Emergence of an independent lineage of dengue virus type 1 (DENV-1) and its co-circulation with predominant DENV-3 during the 2006 dengue fever outbreak in Delhi

International Journal of Infectious Diseases

Volumn 12, Issue 5, 2008, Pages 542-549

  Kukreti, Himani ^a   Chaudhary, Artee ^a   Rautela, R S ^a   Anand, Ranjana ^a   Mittal, Veena ^a   Chhabra, Mala ^a   Bhattacharya, D ^a   Lal, Shiv ^a   Rai, Arvind ^a  

^a NATIONAL INSTITUTE OF COMMUNICABLE DISEASES   (India)

Author keywords

CprM gene junction; Dengue virus; Lineages; Multiple sequence alignment; Phylogenetic tree

Indexed keywords

ADOLESCENT; ADULT; ARTICLE; CHILD; CLINICAL ARTICLE; DENGUE; DENGUE VIRUS; DENGUE VIRUS 1; DENGUE VIRUS 3; EPIDEMIC; FEMALE; GENOTYPE; HUMAN; INDIA; MALE; NUCLEOTIDE SEQUENCE; PHYLOGENY; SEQUENCE ALIGNMENT; SEROTYPE; VIRUS ISOLATION; VIRUS STRAIN;

BASE SEQUENCE; COMMUNICABLE DISEASES, EMERGING; DENGUE; DENGUE VIRUS; DISEASE OUTBREAKS; GENOTYPE; HUMANS; INDIA; PHYLOGENY;

EID: 50349099372     PISSN: 12019712     EISSN: None     Source Type: Journal    
DOI: 10.1016/j.ijid.2008.02.009     Document Type: Article

References (36)

1. Phuong H.L., de Vries P.J., Thai K.T., Nga T.T., Hung L.Q., Giao P.T., et al. Dengue virus infections in Vietnam: tip of an iceberg. Dengue Bull 30 (2006) 15-25
2. Setiati T.E., Wagenaar J.F., de Kruif M.D., Mairuhu A.T., Gorp E.C., and Soemantri A. Changing epidemiology of changing haemorrhagic fever in Indonesia. Dengue Bull 30 (2006) 1-14
3. Singh U.B., Maitra A., Broor S., Rai A., Pasha S.T., and Seth P. Partial nucleotide sequencing and molecular evolution of epidemic-causing dengue 2 strains. J Infect Dis 180 (1999) 959-965
4. Dash P.K., Parida M.M., Saxena P., Abhayankar A., Singh C.P., Tewari K.N., et al. Remergence of dengue virus type 3 (genotype III) in India: implication for increased incidence of DHF and DSS. Virol J 3 (2006) 55-64
5. Dash P.K., Parida M.M., Saxena P., Kumar M., Rai A., Pasha S.T., et al. Emergence and continued circulation of dengue-2 (genotype IV) virus strains in Northern India. J Med Virol 74 (2004) 314-322
6. Kumar M., Pasha S.T., Mittal V., Rawat D.S., Arya S.C., Agarwal N., et al. Unusual emergence of guate98-like molecular genotype of DEN-3 during 2003 dengue outbreak in Delhi. Dengue Bull 28 (2005) 161-167
7. Monath T.P. Dengue: the risk to developed and developing countries. Proc Natl Acad Sci U S A 91 (1994) 2395-2400
8. Clarke T. Dengue virus: break-bone fever. Nature 416 (2002) 672-674
9. Gubler D.J. Epidemic dengue/dengue hemorrhagic fever as a public health, social and economic problem in the 21st century. Trends Microbiol 10 (2002) 100-103
10. Holmes E.C., and Burch S.S. The causes and consequences of genetic variation in dengue virus. Trends Microbiol 8 (2000) 74-77
11. Wang E., Ni H., Xu R., Barrett A.D., Watowich S.J., Gubler D.J., et al. Evolutionary relationships of endemic/epidemic and sylvatic dengue viruses. J Virol 74 (2000) 3227-3234
12. Holmes E.C., and Twiddy S.S. The origin, emergence and evolutionary genetics of dengue virus. Infect Genet Evol 3 (2003) 19-28
13. Rico-Hesse R. Microevolution and virulence of dengue viruses. Adv Virus Res 59 (2003) 315-341
14. Halstead S.B. The Alexander D. Langmuir Lecture. The pathogenesis of dengue. Molecular epidemiology in infectious disease. Am J Epidemiol 114 (1981) 632-648
15. Thein S., Aung M.M., Shwe T.N., Aye M., Aung Z., Aye K., et al. Risk factors in dengue shock syndrome. Am J Trop Med Hyg 56 (1997) 566-572
16. Leitmeyer K.C., Vaughn D.W., Watts D.M., Salas R., Villalobos de Chacon I., Ramos C., et al. Dengue virus structural differences that correlate with pathogenesis. J Virol 73 (1999) 4738-4747
17. Kochel T.J., Watts D.M., Halstead S.B., Hayes C.G., Espinoza A., Felices V., et al. Effect of dengue-1 antibodies on American dengue-2 viral infection and dengue haemorrhagic fever. Lancet 360 (2002) 310-312
18. Cologna R., Armstrong P.M., and Rico-Hesse R. Selection for virulent dengue viruses occurs in humans and mosquitoes. J Virol 79 (2005) 853-859
19. Lanciotti R.S., Calisher C.H., Gubler D.J., Chang G.J., and Vorndam A.V. Rapid detection and typing of dengue viruses from clinical samples by using reverse transcriptase-polymerase chain reaction. J Clin Microbiol 30 (1992) 545-551
20. Singh U.B., and Seth P. Use of nucleotide sequencing of the genomic cDNA fragments of the capsid/premembrane junction region for molecular epidemiology of dengue type 2 viruses. Southeast Asian J Trop Med Public Health 32 (2001) 326-335
21. Aviles G., Rowe J., Meissner J., Manzur Caffarena J.C., Enria D., and St Jeor S. Phylogenetic relationships of dengue-1 viruses from Argentina and Paraguay. Arch Virol 147 (2002) 2075-2087
22. Dar L., Gupta E., Narang P., and Broor S. Co-circulation of dengue serotypes, Delhi, India, 2003. Emerg Infect Dis 12 (2006) 352-353
23. Kumar S., Tamura K., and Nei M. MEGA3: Integrated software for molecular evolutionary genetics analysis and sequence alignment. Brief Bioinform 5 (2004) 150-163
24. Saitou N., and Nei M. The neighbor-joining method: a new method for reconstructing phylogenetic trees. Mol Biol Evol 4 (1987) 406-425
25. Gore M.M. Need for constant monitoring of dengue infections. Indian J Med Res 121 (2005) 9-12
26. Directorate General of Health Services, Ministry of Health and Family Welfare. National Vector Borne Disease Control Programme (NVBDCP). Dengue fever. Available at: http://www.nvbdcp.gov.in (accessed April 2008).
27. Zhang C., Mammen M.P., Chinnawirotpisan Jr. P., Klungthong C., Rodpradit P., Monkongdee P., et al. Clade replacements in dengue virus serotypes 1 and 3 are associated with changing serotype prevalence. J Virol 79 (2005) 15123-15130
28. Harris E., Roberts T.G., Smith L., Selle J., Kramer L.D., Valle S., et al. Typing of dengue viruses in clinical specimens and mosquitoes by single-tube multiplex reverse transcriptase PCR. J Clin Microbiol 36 (1998) 2634-2639
29. Kyte J., and Doolittle R.F. A simple method for displaying the hydropathic character of a protein. J Mol Biol 157 (1982) 105-132
30. Nuegoonpipat A., Berlioz-Arthaud A., Chow V., Endy T., Lowry K., Mai le Q., et al. Sustained transmission of dengue virus type 1 in the Pacific due to repeated introductions of different Asian strains. Virology 329 (2004) 505-512
31. Usuku S., Castillo L., Sugimoto C., Noguchi Y., Yogo Y., and Kobayashi N. Phylogenetic analysis of dengue-3 viruses prevalent in Guatemala during 1996-1998. Arch Virol 146 (2001) 1381-1390
32. Domingo C., Palacios G., Jabado O., Reyes N., Niedrig M., Gascon J., et al. Use of a short fragment of the C-terminal E gene for detection and characterization of two new lineages of dengue virus 1 in India. J Clin Microbiol 44 (2006) 1519-1529
33. Padbidri V.S., Mahadev P.V., Thakare J.P., Pant U., Ilkal M.A., Varghese G., et al. Virological and entomological investigations of an outbreak of dengue fever in Dhule district, Maharashtra. Ind J Med Microbiol 14 (1996) 25-32
34. Rahman M., Rahman K., Siddque A.K., Shoma S., Kamal A.H., Ali K.S., et al. First outbreak of Dengue hemorrhagic fever, Bangladesh. Emerg Infect Dis 8 (2002) 738-740
35. Messer W.B., Vitarana U., Sivananthan K., Elvtigala J., Preethimala L.D., Ramesh R., et al. Epidemiology of dengue in Sri Lanka before and after the emergence of epidemic dengue hemorrhagic fever. Am J Trop Med Hyg 66 (2002) 765-773
36. Messer W.B., Gubler D.J., Harris E., Sivananthan K., and de Silva A.M. Emergence and global spread of a dengue serotype 3, subtype III virus. Emerg Infect Dis 9 (2003) 800-809