Identification, isolation and characterization of a CC-NBS-LRR candidate disease resistance gene family in grapevine

Molecular Breeding

Volumn 22, Issue 3, 2008, Pages 421-432

  Kortekamp, Andreas ^a,b   Welter, Leocir ^a   Vogt, Sarah ^a   Knoll, Alexander ^a,c   Schwander, Florian ^a   Töpfer, Reinhard ^a   Zyprian, Eva ^a  

^a INSTITUTE FOR EPIDEMIOLOGY AND PATHOGEN DIAGNOSTICS   (Germany)

^b UNIVERSITY OF HOHENHEIM   (Germany)

^c UNIVERSITY OF KARLSRUHE   (Germany)

Author keywords

BAC library; Differential display; Plasmopara viticola; Resistance gene; Vitis sp.

Indexed keywords

NUCLEIC ACIDS; PLANTS (BOTANY); WATER TREATMENT;

BAC LIBRARY; DIFFERENTIAL DISPLAY; DISEASE-RESISTANCE GENES; DOWNY MILDEW; GENE FAMILIES; ISOLATION AND CHARACTERIZATION; MONTPELLIER; PLASMOPARA VITICOLA; RESISTANCE GENES; VITIS SP.;

GENES;

PERONOSPORACEAE; PLASMOPARA VITICOLA; VITACEAE; VITIS; VITIS RIPARIA; VITIS SP.; VITIS VINIFERA;

EID: 50249138757     PISSN: 13803743     EISSN: None     Source Type: Journal    
DOI: 10.1007/s11032-008-9186-2     Document Type: Article

References (37)

1. SF Altschul TL Madden AA Schäffer J Zhang Z Zhang W Miller DJ Lipman 1997 Gapped BLAST and PSI-BLAST: a new generation of protein database search programs Nucleic Acids Res 25 3389 3402
2. CL Barker T Donald J Pauquet MB Ratnaparkhe A Bouquet A-F Adam-Blondon MR Thomas I Dry 2005 Genetic and physical mapping of the grapevine powdery mildew resistance gene, Run1, using a bacterial artificial chromosome library Theor Appl Genet 111 370 377
3. R Blaich 1977 Attempts at artificial mycorrhiza formation in Vitis riparia Vitis 16 32 37
4. GT Bryan KS Wu L Farrall Y Jia HP Hershey SA McAdams KN Faulk GK Donaldson R Tarchini B Valent 2000 A single amino acid difference distinguishes resistant and susceptible alleles of the rice blast resistance gene Pi-ta Plant Cell 12 2033 2046
5. S Chang J Puryear J Cairney 1993 A simple and efficient method for isolating RNA from pine trees Plant Mol Biol Rep 11 113 116
6. GM Church W Gilbert 1984 Genomic sequencing Proc Natl Acad Sci U S A 81 1991 1995
7. JL Dangl JDG Jones 2001 Plant pathogens and integrated defence responses to infection Nature 411 826 833
8. B Demesure N Sodzi RJ Petit 1995 A set of universal primers for amplification of polymorphic non-coding regions of mitochondrial and chloroplast DNA in plants Mol Ecol 4 129 131
9. G Di Gaspero G Cipriani A-F Adam-Blondon R Testolin 2007 Linkage maps of grapevine displaying the chromosomal locations of 420 microsatellite markers and 82 markers for R-gene candidates Theor Appl Genet 114 1249 1263
10. B Fischer I Salakhutdinov M Akkurt R Eibach KJ Edwards R Töpfer EM Zyprian 2004 Quantitative trait locus analysis of fungal disease resistance factors on a molecular map of grapevine Theor Appl Genet 108 505 515
11. JJ Grant A Chini D Basu GJ Loake 2003 Targeted activation tagging of the Arabidopsis NBS-LRR gene, ADR1, conveys resistance to virulent pathogens Mol Plant Microbe Interact 16 669 680
12. MM Hamiduzzaman G Jakab L Barnavon JM Neuhaus B Mauch-Mani 2005 Beta-Aminobutyric acid-induced resistance against downy mildew in grapevine acts through the potentiation of callose formation and jasmonic acid signaling Mol Plant Microbe Interact 18 819 829
13. D Hanahan 1983 Studies on transformation of Escherichia coli with plasmids J Mol Biol 166 557 580
14. SH Hulbert CA Webb SM Smith Q Sun 2001 Resistance gene complexes: evolution and utilization Annu Rev Phytopathol 39 285 312
15. Jaillon O, Aury J-M, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro F, Anthouard V, Vico V, DelFabbro C, Alaux M, DiGaspero G, Dumas V, Felice N, Paillard S, Juman I, Moroldo M, Scalabrin S, Canaguier A, LeClainche I, Malacrida G, Durand E, Pesole G, Laucou V, Chatelet P, Merdinoglu D, Delledonne M, Pezotti M, Lecharny A, Scarpelli C, Artiguenave F, Pe ME, Valle G, Morgante M, Caboche M, Adam-Blondon A-F, Weissenbach J, Quetier F, Wincker O (2007) The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla. Nature doi: 10.1038/nature06148
16. Kortekamp A (2001) Charakterisierung der Plasmopara-Resistenz bei Weinreben (Vitis sp). Dissertation, University of Karlsruhe
17. A Kortekamp 2006 Expression analysis of defence-related genes in grapevine leaves after inoculation with a host and a non-host pathogen Plant Physiol Biochem 44 58 67
18. A Kortekamp E Zyprian 2003 Characterization of Plasmopara-resistance in grapevine using in vitro plants J Plant Physiol 160 1393 1400
19. Lee SB, Taylor JW (1990) Isolation of DNA from fungal mycelia and single spores. In Innis MA, Gelfand DH, Sninsky JJ, White TJ (eds) PCR protocols: a guide to methods and applications. Academic Press, San Diego, pp 282-287
20. P Liang AB Pardee 1992 Differential display of eukaryotic messenger RNA by means of the polymerase chain reaction Science 257 967 971
21. EM Linsmaier F Skoog 1965 Organic growth factor requirements of tobacco tissue cultures Physiol Plant 18 100 127
22. BC Meyers A Kozik A Griego H Kuang RW Michelmore 2003 Genome wide analysis of NBS-LRR-encoding genes in Arabidopsis Plant Cell 15 809 834
23. B Müller-Roeber C Pical 2002 Inositol phospholipid metabolism in Arabidopsis, characterized and putative isoforms of inositol phospholipid kinase and phosphoinositide-specific phopholipase C Plant Physiol 130 22 46
24. Q Pan J Wendel R Fluhr 2000 Divergent evolution of plant NBS-LRR resistance gene homologues in dicot and cereal genomes J Mol Evol 50 203 213
25. JE Parker MJ Coleman V Szabo LN Frost R Schmidt EA van der Biezen T Moores C Dean MJ Daniels JDG Jones 1997 The Arabidopsis downy mildew resistance gene RPP5 shares similarity to the Toll and Interleukin-1 receptors with N and L6 Plant Cell 9 879 894
26. JR Peart P Mestre R Lu I Malcuit DC Baulcombe 2005 NRG1, a CC-NB-LRR protein, together with N, a TIR-NB-LRR protein, mediates resistance against tobacco mosaic virus Curr Biol 15 968 973
27. EM Southern 1975 Detection of specific sequences among DNA fragments separated by gel electrophoresis J Mol Biol 98 503 517
28. MR Thomas N Scott 1993 Microsatellite repeats in grapevine reveal DNA polymorphisms when analyzed as sequence-tagged sites (STSs) Theor Appl Genet 86 985 990
29. T-C Tseng T-H Tsai M-Y Lue Lee H-T 1995 Identification of sucrose-regulated genes in cultured rice cells using mRNA differential display Gene 161 179 182
30. Van Ooijen JW, Voorrips RE (2001) JoinMap 3.0, software for the calculation of genetic linkage maps. Plant Research International, Wageningen, The Netherlands
31. Velasco R, Zharkikh A, Troggio M, Cartwright DA, Cestaro A, Pruss A, Pruss D, Pindo M, FitzGerald LM, Vezulli S, Reid J, Malacarne G, Iliev D, Coppola G, Wardell B, Micheletti D, Macalma T, Facci M, Mitchell JT, Perrazzolli M, Eldredge G, Gatto P, Oyzerski R, Moretto M, Gutin N, Stefanini M, Chen Y, Segala C, Davenport C, Dematte L, Mraz A, Battilana J, Stormo K, Costa F, Tao Q, Si-Ammour A, Harkins T, Lackey A, Perbost C, Taillon B, Stella A, Solovyev V, Fawcett JA, Sterck L, Vandepoele K, Grando SM, Toppo S, Moser C, Lanchbury J, Bogden R, Skolnick M, Sgaramella V, Bhatnagar SK, Fontana P, Gutin A, VandePeer Y, Salamini F, Viola R (2007) A high quality draft consesnus sequence of the genome of a heterozygous grapevine variety. PlosOne 2(12) e:1326 doi: 10.1371/journal.pone.0001326
32. W Wang A Devoto JG Turner S Xiao 2007 Expression of the membrane-associated resistance protein RPW8 enhances basal defense against biotrophic pathogens Mol Plant Microbe Interact 20 966 976
33. LJ Welter N Göktürk-Baydar M Akkurt E Maul R Eibach R Töpfer E Zyprian 2007 Genetic mapping and localisation of quantitative trait loci affecting fungal disease resistance and leaf morphology in grapevine (Vitis vinifera L.) Mol Breed 20 359 374
34. A Wielgoss A Kortekamp 2006 Comparison of PR-1 expression in different grapevine culture systems after inoculation with a host and a non-host pathogen Vitis 45 9 13
35. Xiao S (2006) Current perspectives on molecular mechanisms of plant disease resistance. In: Teixeira da Silva (ed) Floriculture, ornamental and plant biotechnology: advances and topical issues, 1st edn. Global Science Books, UK, pp 317-333
36. S Xiao S Ellwood O Calis E Patrick T Li M Coleman JG Turner 2001 Broad-spectrum mildew resistance in Arabidopsis thaliana mediated by RPW8 Science 291 118 120
37. S Zhao SI Ooi AB Pardee 1995 New primer strategy improves precision of differential display Biotechniques 18 842 850