-
1
-
-
0033976458
-
The Pfam protein families database
-
Bateman, A., E. Birney, R. Durbin, S. R. Eddy, K. L. Howe, and E. L. Sonnhammer. 2000. The Pfam protein families database. Nucleic Acids Res. 28: 263-266.
-
(2000)
Nucleic Acids Res
, vol.28
, pp. 263-266
-
-
Bateman, A.1
Birney, E.2
Durbin, R.3
Eddy, S.R.4
Howe, K.L.5
Sonnhammer, E.L.6
-
2
-
-
0032740223
-
Polyketide production by plant-associated pseudomonads
-
Bender, C., V. Rangaswamy, and J. Loper. 1999. Polyketide production by plant-associated pseudomonads. Annu. Rev. Phytopathol. 37: 175-196.
-
(1999)
Annu. Rev. Phytopathol
, vol.37
, pp. 175-196
-
-
Bender, C.1
Rangaswamy, V.2
Loper, J.3
-
3
-
-
0033598832
-
Global GacA-steered control of cyanide and exoprotease production in Pseudomonas fluorescens involves specific ribosome binding sites
-
Blumer, C., S. Heeb, G. Pessi, and D. Haas. 1999. Global GacA-steered control of cyanide and exoprotease production in Pseudomonas fluorescens involves specific ribosome binding sites. Proc. Natl. Acad. Sci. USA 96: 14073-14078.
-
(1999)
Proc. Natl. Acad. Sci. USA
, vol.96
, pp. 14073-14078
-
-
Blumer, C.1
Heeb, S.2
Pessi, G.3
Haas, D.4
-
4
-
-
32044458405
-
Reciprocal regulation of pyoluteorin production with membrane transporter gene expression in Pseudomonas fluorescens Pf-5
-
Brodhagen, M., I. Paulsen, and J. E. Loper. 2005. Reciprocal regulation of pyoluteorin production with membrane transporter gene expression in Pseudomonas fluorescens Pf-5. Appl. Environ. Microbiol. 71: 6900-6909.
-
(2005)
Appl. Environ. Microbiol
, vol.71
, pp. 6900-6909
-
-
Brodhagen, M.1
Paulsen, I.2
Loper, J.E.3
-
5
-
-
0345639649
-
Identification of the operator of the lux regulon from the Vibrio fischeri strain ATCC.7744
-
Devine, J. H., G. S. Shadel, and T. O. Baldwin. 1989. Identification of the operator of the lux regulon from the Vibrio fischeri strain ATCC.7744. Proc. Natl. Acad. Sci. USA 86: 5688-5692.
-
(1989)
Proc. Natl. Acad. Sci. USA
, vol.86
, pp. 5688-5692
-
-
Devine, J.H.1
Shadel, G.S.2
Baldwin, T.O.3
-
6
-
-
0029818809
-
Census and consensus in bacterial ecosystems: The LuxR-LuxI family of quorum-sensing transcriptional regulators
-
Fuqua, C., S. C. Winans, and E. P. Greenberg. 1996. Census and consensus in bacterial ecosystems: The LuxR-LuxI family of quorum-sensing transcriptional regulators. Annu. Rev. Microbiol. 50: 727-751.
-
(1996)
Annu. Rev. Microbiol
, vol.50
, pp. 727-751
-
-
Fuqua, C.1
Winans, S.C.2
Greenberg, E.P.3
-
7
-
-
3242784128
-
Phenazine-1-carboxylic acid is negatively regulated and pyoluteorin positively regulated by gacA in Pseudomonas sp. M18
-
Ge, Y., X. Huang, S. Wang, X. Zhang, and Y. Xu. 2004. Phenazine-1-carboxylic acid is negatively regulated and pyoluteorin positively regulated by gacA in Pseudomonas sp. M18. FEMS Microbiol. Lett. 237: 41-47.
-
(2004)
FEMS Microbiol. Lett
, vol.237
, pp. 41-47
-
-
Ge, Y.1
Huang, X.2
Wang, S.3
Zhang, X.4
Xu, Y.5
-
8
-
-
33846701508
-
Analysis of mechanism and relationship of GacA and RsmA, two regulators of antibiotics production in Pseudomonas sp. M18
-
Ge, Y., X. Huang, X. Zhang, and Y. Xu. 2006. Analysis of mechanism and relationship of GacA and RsmA, two regulators of antibiotics production in Pseudomonas sp. M18. Wei Sheng Wu Xue Bao 46: 531-536.
-
(2006)
Wei Sheng Wu Xue Bao
, vol.46
, pp. 531-536
-
-
Ge, Y.1
Huang, X.2
Zhang, X.3
Xu, Y.4
-
9
-
-
33748552693
-
Insertional mutation of the rpoS gene contributes to alteration in biosynthesis of antifungal agents in Pseudomonas sp. M18
-
Ge, Y., D. Pei, W. Li, Y. Zhao, and Y. Xu. 2006. Insertional mutation of the rpoS gene contributes to alteration in biosynthesis of antifungal agents in Pseudomonas sp. M18. Biol. Control 39: 186-192.
-
(2006)
Biol. Control
, vol.39
, pp. 186-192
-
-
Ge, Y.1
Pei, D.2
Li, W.3
Zhao, Y.4
Xu, Y.5
-
10
-
-
33846699721
-
RpoS as an intermediate in RsmA-dependent regulation of secondary antifungal metabolites biosynthesis in Pseudomonas sp. M18
-
Ge, Y., S. Yang, Y. Fang, R. Yang, D. Mou, J. Cui, and L. Wen. 2007. RpoS as an intermediate in RsmA-dependent regulation of secondary antifungal metabolites biosynthesis in Pseudomonas sp. M18. FEMS Microbiol. Lett. 268: 81-87.
-
(2007)
FEMS Microbiol. Lett
, vol.268
, pp. 81-87
-
-
Ge, Y.1
Yang, S.2
Fang, Y.3
Yang, R.4
Mou, D.5
Cui, J.6
Wen, L.7
-
11
-
-
0242507789
-
Regulation of antibiotic production in root-colonizing Pseudomonas spp. and relevance for biological control of plant disease
-
Haas, D. and C. Keel. 2003. Regulation of antibiotic production in root-colonizing Pseudomonas spp. and relevance for biological control of plant disease. Annu. Rev. Phytopathol. 41: 117-153.
-
(2003)
Annu. Rev. Phytopathol
, vol.41
, pp. 117-153
-
-
Haas, D.1
Keel, C.2
-
12
-
-
0036156940
-
Regulatory RNA as mediator in GacA/RsmA-dependent global control of exoproduct formation in Pseudomonas fluorescens CHA0
-
Heeb, S., C. Blumer, and D. Haas. 2002. Regulatory RNA as mediator in GacA/RsmA-dependent global control of exoproduct formation in Pseudomonas fluorescens CHA0. J Bacteriol. 184: 1046-1056.
-
(2002)
J Bacteriol
, vol.184
, pp. 1046-1056
-
-
Heeb, S.1
Blumer, C.2
Haas, D.3
-
13
-
-
0032575051
-
A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: Application for isolation of unmarked Pseudomonas aeruginosa mutants
-
Hoang, T. T., R. R. Karkhoff-Schweizer, A. J. Kutchma, and H. P. Schweizer. 1998. A broad-host-range Flp-FRT recombination system for site-specific excision of chromosomally-located DNA sequences: Application for isolation of unmarked Pseudomonas aeruginosa mutants. Gene 212: 77-86.
-
(1998)
Gene
, vol.212
, pp. 77-86
-
-
Hoang, T.T.1
Karkhoff-Schweizer, R.R.2
Kutchma, A.J.3
Schweizer, H.P.4
-
14
-
-
15044357394
-
Isolation and characterization of a new fluorescent Pseudomonas strain that produces both phenazine-1-carboxylic acid and pyoluteorin
-
Hu, H., Y. Xu, F. Chen, X. Zhang, and B. Hur. 2005. Isolation and characterization of a new fluorescent Pseudomonas strain that produces both phenazine-1-carboxylic acid and pyoluteorin. J. Microbiol. Biotechnol. 15: 86-90.
-
(2005)
J. Microbiol. Biotechnol
, vol.15
, pp. 86-90
-
-
Hu, H.1
Xu, Y.2
Chen, F.3
Zhang, X.4
Hur, B.5
-
15
-
-
33745133724
-
Identification and characterization of a putative ABC transporter PItHIJKN required for pyoluteorin production in Pseudomonas sp. M18
-
Huang, X., A. Yan, X. Zhang, and Y. Xu. 2006. Identification and characterization of a putative ABC transporter PItHIJKN required for pyoluteorin production in Pseudomonas sp. M18. Gene 376: 68-78.
-
(2006)
Gene
, vol.376
, pp. 68-78
-
-
Huang, X.1
Yan, A.2
Zhang, X.3
Xu, Y.4
-
16
-
-
1842524056
-
Identification-and characterization of pltZ, a gene involved in the repression of pyoluteorin biosynthesis in Pseudomonas sp. M18
-
Huang, X., D. Zhu, Y. Ge, H. Hu, X. Zhang, and Y. Xu. 2004. Identification-and characterization of pltZ, a gene involved in the repression of pyoluteorin biosynthesis in Pseudomonas sp. M18. FEMS Microbiol. Lett. 232: 197-202.
-
(2004)
FEMS Microbiol. Lett
, vol.232
, pp. 197-202
-
-
Huang, X.1
Zhu, D.2
Ge, Y.3
Hu, H.4
Zhang, X.5
Xu, Y.6
-
17
-
-
11144354767
-
Global regulation of quorum sensing and virulence by VqsR in Pseudomonas aeruginosa
-
Juhas, M., L. Wiehlmann, B. Huber, D. Jordan, J. Lauber, P. Salunkhe, A. S. Limpert, F. von Gotz, I. Steinmetz, L. Eberl, and B. Tummler. 2004. Global regulation of quorum sensing and virulence by VqsR in Pseudomonas aeruginosa. Microbiology 150: 831-841.
-
(2004)
Microbiology
, vol.150
, pp. 831-841
-
-
Juhas, M.1
Wiehlmann, L.2
Huber, B.3
Jordan, D.4
Lauber, J.5
Salunkhe, P.6
Limpert, A.S.7
von Gotz, F.8
Steinmetz, I.9
Eberl, L.10
Tummler, B.11
-
18
-
-
0023715368
-
Improved broad-host-range plasmids for DNA cloning in Gram-negative bacteria
-
Keen, N. T., S. Tamaki, D. Kobayashi, and D. Trollinger. 1988. Improved broad-host-range plasmids for DNA cloning in Gram-negative bacteria. Gene 70: 191-197.
-
(1988)
Gene
, vol.70
, pp. 191-197
-
-
Keen, N.T.1
Tamaki, S.2
Kobayashi, D.3
Trollinger, D.4
-
19
-
-
43349086724
-
Two simple media for the demonstration of pyocyanin and fluorescin
-
King, E. O., M. K. Ward, and D. E. Raney. 1954. Two simple media for the demonstration of pyocyanin and fluorescin. J. Lab. Clin. Med. 44: 301-307.
-
(1954)
J. Lab. Clin. Med
, vol.44
, pp. 301-307
-
-
King, E.O.1
Ward, M.K.2
Raney, D.E.3
-
20
-
-
0028932028
-
Characterization of a genomic region required or production of the antibiotic pyoluteorin by the biological control agent Pseudomonas fluorescens Pf-5
-
Kraus, J. and J. E. Loper. 1995. Characterization of a genomic region required or production of the antibiotic pyoluteorin by the biological control agent Pseudomonas fluorescens Pf-5. Appl. Environ. Microbiol. 61: 849-854.
-
(1995)
Appl. Environ. Microbiol
, vol.61
, pp. 849-854
-
-
Kraus, J.1
Loper, J.E.2
-
21
-
-
33646232999
-
A distinct QscR regulon in the Pseudomonas aeruginosa quorum-sensing circuit
-
Lequette, Y., J. H. Lee, F. Ledgham, A. Lazdunski, and E. P. Greberg. 2006. A distinct QscR regulon in the Pseudomonas aeruginosa quorum-sensing circuit. J. Bacteriol. 188: 3365-3370.
-
(2006)
J. Bacteriol
, vol.188
, pp. 3365-3370
-
-
Lequette, Y.1
Lee, J.H.2
Ledgham, F.3
Lazdunski, A.4
Greberg, E.P.5
-
22
-
-
0343495285
-
Study of the biosynthesis of phenazine-1-carboxylic acid
-
Levitch, M. E. and E. R. Stadtman. 1964. Study of the biosynthesis of phenazine-1-carboxylic acid. Arch. Biochem. Biophys. 106: 194-194.
-
(1964)
Arch. Biochem. Biophys
, vol.106
, pp. 194-194
-
-
Levitch, M.E.1
Stadtman, E.R.2
-
23
-
-
0032519353
-
GeneMark.hmm: New solutions for gene finding
-
Lukashin, A. V. and M. Borodovsky. 1998. GeneMark.hmm: New solutions for gene finding. Nucleic Acids Res. 26: 1107-1115.
-
(1998)
Nucleic Acids Res
, vol.26
, pp. 1107-1115
-
-
Lukashin, A.V.1
Borodovsky, M.2
-
24
-
-
33747078286
-
Phenazine compounds in fluorescent Pseudomonas spp.: Biosynthesis and regulation
-
Mavrodi, D. V., W. Blankenfeldt, and L. S. Thomashow. 2006. Phenazine compounds in fluorescent Pseudomonas spp.: Biosynthesis and regulation. Annu. Rev. Phytopathol. 44: 417-445.
-
(2006)
Annu. Rev. Phytopathol
, vol.44
, pp. 417-445
-
-
Mavrodi, D.V.1
Blankenfeldt, W.2
Thomashow, L.S.3
-
25
-
-
0031467411
-
Quorum sensing and Chromobacterium violaceum: Exploitation of violacein production and inhibition for the detection of N-acylhomoserine lactones
-
McClean, K. H., M. K. Winson, L. Fish, A. Taylor, S. R. Chhabra, M. Camara, M. Daykin, J. H. Lamb, S. Swift, B. W. Bycroft, G. S. Stewart, and P. Williams. 1997. Quorum sensing and Chromobacterium violaceum: Exploitation of violacein production and inhibition for the detection of N-acylhomoserine lactones. Microbiology 143: 3703-3711.
-
(1997)
Microbiology
, vol.143
, pp. 3703-3711
-
-
McClean, K.H.1
Winson, M.K.2
Fish, L.3
Taylor, A.4
Chhabra, S.R.5
Camara, M.6
Daykin, M.7
Lamb, J.H.8
Swift, S.9
Bycroft, B.W.10
Stewart, G.S.11
Williams, P.12
-
27
-
-
0032936731
-
Characterization of the pyoluteorin biosynthetic gene cluster of Pseudomonas fluorescens Pf-5
-
Nowak-Thompson, B., N. Chaney, J. S. Wing, S. J. Gould, and J. E. Loper. 1999. Characterization of the pyoluteorin biosynthetic gene cluster of Pseudomonas fluorescens Pf-5. J. Bacteriol. 181: 2166-2174.
-
(1999)
J. Bacteriol
, vol.181
, pp. 2166-2174
-
-
Nowak-Thompson, B.1
Chaney, N.2
Wing, J.S.3
Gould, S.J.4
Loper, J.E.5
-
28
-
-
0028834892
-
Molecular analysis of genes encoding phenazine biosynthesis in the biological control bacterium Pseudomonas aureofaciens 30-84
-
Pierson, L. S., 3rd, T. Gaffney, S. Lam, and F. Gong. 1995. Molecular analysis of genes encoding phenazine biosynthesis in the biological control bacterium Pseudomonas aureofaciens 30-84. FEMS Microbiol. Lett. 134: 299-307.
-
(1995)
FEMS Microbiol. Lett
, vol.134
, pp. 299-307
-
-
Pierson 3rd, L.S.1
Gaffney, T.2
Lam, S.3
Gong, F.4
-
29
-
-
0034740227
-
Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome
-
Reese, M. G. 2001. Application of a time-delay neural network to promoter annotation in the Drosophila melanogaster genome. Comput. Chem. 26: 51-56.
-
(2001)
Comput. Chem
, vol.26
, pp. 51-56
-
-
Reese, M.G.1
-
30
-
-
0004136246
-
-
3rd Ed. CSH Laboratory Press, Cold Spring Harbor, NY, U.S.A
-
Sambrook, J. and D. W. Russell. 2001. Molecular Cloning: A Laboratory Manual, 3rd Ed. CSH Laboratory Press, Cold Spring Harbor, NY, U.S.A.
-
(2001)
Molecular Cloning: A Laboratory Manual
-
-
Sambrook, J.1
Russell, D.W.2
-
31
-
-
0033974559
-
Autoinduction of 2,4-diacetylphloroglucinol biosynthesis in the biocontrol agent Pseudomonas fluorescens CHA0 and repression by the bacterial metabolites salicylate and pyoluteorin
-
Schnider-Keel, U., A. Seematter, M. Maurhofer, C. Blumer, B. Duffy, C. Gigot-Bonnefoy, C. Reimmann, R. Notz, G. Defago, D. Haas, and C. Keel. 2000. Autoinduction of 2,4-diacetylphloroglucinol biosynthesis in the biocontrol agent Pseudomonas fluorescens CHA0 and repression by the bacterial metabolites salicylate and pyoluteorin. J. Bacteriol. 182: 1215-1225.
-
(2000)
J. Bacteriol
, vol.182
, pp. 1215-1225
-
-
Schnider-Keel, U.1
Seematter, A.2
Maurhofer, M.3
Blumer, C.4
Duffy, B.5
Gigot-Bonnefoy, C.6
Reimmann, C.7
Notz, R.8
Defago, G.9
Haas, D.10
Keel, C.11
-
32
-
-
0030995489
-
Detecting and characterizing N-acyl-homoserine lactone signal molecules by thin-layer chromatography
-
Shaw, P. D., G. Ping, S. L. Daly, C. Cha, J. E. Cronan, K. L. Rinehart, and S. K. Farrand. 1997. Detecting and characterizing N-acyl-homoserine lactone signal molecules by thin-layer chromatography. Proc. Natl. Acad. Sci. USA 94: 6036-6041.
-
(1997)
Proc. Natl. Acad. Sci. USA
, vol.94
, pp. 6036-6041
-
-
Shaw, P.D.1
Ping, G.2
Daly, S.L.3
Cha, C.4
Cronan, J.E.5
Rinehart, K.L.6
Farrand, S.K.7
-
33
-
-
0001290045
-
PROSITE: A documented database using patterns and profiles as motif descriptors
-
Sigrist, C. J., L. Cerutti, N. Hulo, A. Gattiker, L. Falquet, M. Pagni, A. Bairoch, and P. Bucher. 2002. PROSITE: A documented database using patterns and profiles as motif descriptors. Brief Bioinform. 3: 265-274.
-
(2002)
Brief Bioinform
, vol.3
, pp. 265-274
-
-
Sigrist, C.J.1
Cerutti, L.2
Hulo, N.3
Gattiker, A.4
Falquet, L.5
Pagni, M.6
Bairoch, A.7
Bucher, P.8
-
34
-
-
50249164047
-
Negative regulation on PCA production is not correlated with positive regulation on BHL and HHL synthesis by gacA in Pseudomonas sp. M18
-
Tang, X., A. Yan, X. Huang, X. Zhang, and Y. Xu. 2006. Negative regulation on PCA production is not correlated with positive regulation on BHL and HHL synthesis by gacA in Pseudomonas sp. M18. Wei Sheng Wu Xue Bao 46: 478-481.
-
(2006)
Wei Sheng Wu Xue Bao
, vol.46
, pp. 478-481
-
-
Tang, X.1
Yan, A.2
Huang, X.3
Zhang, X.4
Xu, Y.5
-
35
-
-
0027968068
-
CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice
-
Thompson, J. D., D. G. Higgins, and T. J. Gibson. 1994. CLUSTAL W: Improving the sensitivity of progressive multiple sequence alignment through sequence weighting, position-specific gap penalties and weight matrix choice. Nucleic Acids Res. 22: 4673-4680.
-
(1994)
Nucleic Acids Res
, vol.22
, pp. 4673-4680
-
-
Thompson, J.D.1
Higgins, D.G.2
Gibson, T.J.3
-
36
-
-
33644963917
-
-
Venturi, V. 2006. Regulation of quorum sensing in Pseudomonas. FEMS Microbiol. Rev. 30: 274-291.
-
Venturi, V. 2006. Regulation of quorum sensing in Pseudomonas. FEMS Microbiol. Rev. 30: 274-291.
-
-
-
-
37
-
-
33846321899
-
An rhl-like quorum-sensing system negatively regulates pyoluteorin production in Pseudomonas sp. M18
-
Yan, A., X. Huang H. Liu, D. Dong, D. Zhang, X. Zhang, and Y. Xu. 2007. An rhl-like quorum-sensing system negatively regulates pyoluteorin production in Pseudomonas sp. M18. Microbiology 153: 16-28.
-
(2007)
Microbiology
, vol.153
, pp. 16-28
-
-
Yan, A.1
Huang, X.2
Liu, H.3
Dong, D.4
Zhang, D.5
Zhang, X.6
Xu, Y.7
-
38
-
-
27944483264
-
Differential regulation of rsmA gene on biosynthesis of pyoluteorin and phenazine-1-carboxylic acid in Pseudomonas sp. M18
-
Zhang, X., S. Wang, H. Geng, Y. Ge, X. Huang, H. Hu, and Y. Xu. 2005. Differential regulation of rsmA gene on biosynthesis of pyoluteorin and phenazine-1-carboxylic acid in Pseudomonas sp. M18. World J. Microbiol. Biotechnol. 21: 883-889.
-
(2005)
World J. Microbiol. Biotechnol
, vol.21
, pp. 883-889
-
-
Zhang, X.1
Wang, S.2
Geng, H.3
Ge, Y.4
Huang, X.5
Hu, H.6
Xu, Y.7
|