-
1
-
-
0142143332
-
MASS: Multiple structural alignment by secondary structures
-
Dror, O., Benyamini, H., Nussinov, R., Wolfson, H.: MASS: Multiple structural alignment by secondary structures. Bioinformatics 19(suppl. 1), 95-104 (2003a)
-
(2003)
Bioinformatics
, vol.19
, Issue.SUPPL. 1
, pp. 95-104
-
-
Dror, O.1
Benyamini, H.2
Nussinov, R.3
Wolfson, H.4
-
2
-
-
0142210126
-
Multiple structural alignment by secondary structures: Algorithm and applications
-
Dror, O., Benyamini, H., Nussinov, R., Wolfson, H.: Multiple structural alignment by secondary structures: Algorithm and applications. Protein Science 12, 2492-2507 (2003b)
-
(2003)
Protein Science
, vol.12
, pp. 2492-2507
-
-
Dror, O.1
Benyamini, H.2
Nussinov, R.3
Wolfson, H.4
-
3
-
-
0030310317
-
Assessing the performance of fold recognition methods by means of a comprehensive benchmark
-
Fischer, D., Elofsson, A., Rice, D., Eisenberg, D.: Assessing the performance of fold recognition methods by means of a comprehensive benchmark. In: Proc. Pac. Symp. Biocomput., pp. 300-318 (1996)
-
(1996)
Proc. Pac. Symp. Biocomput
, pp. 300-318
-
-
Fischer, D.1
Elofsson, A.2
Rice, D.3
Eisenberg, D.4
-
4
-
-
0029936121
-
Surprising similarities in structure comparison
-
Gibrat, J.F., Madej, T., Bryant, S.H.: Surprising similarities in structure comparison. Current Opinion in Structural Biology 6, 377-385 (1996)
-
(1996)
Current Opinion in Structural Biology
, vol.6
, pp. 377-385
-
-
Gibrat, J.F.1
Madej, T.2
Bryant, S.H.3
-
5
-
-
3242882573
-
CE-MC: A multiple protein structure alignment server
-
Guda, C., Lu, S., Sheeff, E.D., Bourne, P.E., Shindyalov, I.N.: CE-MC: A multiple protein structure alignment server. Nucleic Acids Res. 32, W100-W103 (2004)
-
(2004)
Nucleic Acids Res
, vol.32
-
-
Guda, C.1
Lu, S.2
Sheeff, E.D.3
Bourne, P.E.4
Shindyalov, I.N.5
-
6
-
-
0030765455
-
Dali/FSSP classification of three-dimensional protein folds
-
Holm, L., Sander, C.: Dali/FSSP classification of three-dimensional protein folds. Nucleic Acid Res. 25, 231-234 (1997)
-
(1997)
Nucleic Acid Res
, vol.25
, pp. 231-234
-
-
Holm, L.1
Sander, C.2
-
7
-
-
12944249776
-
A discussion of the solution for the best rotation to related two sets of vectors
-
Kabsch, W.: A discussion of the solution for the best rotation to related two sets of vectors. Acta. Crystal. 34A, 827-828 (1978)
-
(1978)
Acta. Crystal
, vol.34 A
, pp. 827-828
-
-
Kabsch, W.1
-
8
-
-
0034495586
-
ProSup: A refined tool for protein structure alignment
-
Lackner, P., Koppensteiner, W.A., Sippl, M.J., Domingues, F.S.: ProSup: A refined tool for protein structure alignment. Protein Engineering 13, 745-752 (2000)
-
(2000)
Protein Engineering
, vol.13
, pp. 745-752
-
-
Lackner, P.1
Koppensteiner, W.A.2
Sippl, M.J.3
Domingues, F.S.4
-
9
-
-
25144458667
-
A new progressive-iterative algorithm for multiple structure alignment
-
Lupyan, D., Leo-Macias, A., Ortiz, A.R.: A new progressive-iterative algorithm for multiple structure alignment. Bioinformatics 21, 3255-3263 (2005)
-
(2005)
Bioinformatics
, vol.21
, pp. 3255-3263
-
-
Lupyan, D.1
Leo-Macias, A.2
Ortiz, A.R.3
-
10
-
-
84956971981
-
-
Shatsky, M., Nussinov, R., Wolfson, H.: MultiProt - A multiple protein structural alignment algorithm. In: Guigó, R., Gusfield, D. (eds.) WABI 2002. LNCS, 2452, pp. 235-250. Springer, Heidelberg (2002)
-
Shatsky, M., Nussinov, R., Wolfson, H.: MultiProt - A multiple protein structural alignment algorithm. In: Guigó, R., Gusfield, D. (eds.) WABI 2002. LNCS, vol. 2452, pp. 235-250. Springer, Heidelberg (2002)
-
-
-
-
11
-
-
0031715982
-
Protein structure alignment by incremental combinatorial extension (CE) of the optimal path
-
Shindyalov, I.N., Bourne, P.E.: Protein structure alignment by incremental combinatorial extension (CE) of the optimal path. Protein Engineering 11, 739-747 (1998)
-
(1998)
Protein Engineering
, vol.11
, pp. 739-747
-
-
Shindyalov, I.N.1
Bourne, P.E.2
-
12
-
-
0025744920
-
Detection of common three-dimensional substructures in proteins
-
Vriend, G., Sander, C.: Detection of common three-dimensional substructures in proteins. Proteins 11, 52-58 (1991)
-
(1991)
Proteins
, vol.11
, pp. 52-58
-
-
Vriend, G.1
Sander, C.2
-
13
-
-
8444245971
-
Approximate Multiple Protein Structure Alignment Using the Sum-of-Pairs Distance
-
Ye, J., Janardan, R.: Approximate Multiple Protein Structure Alignment Using the Sum-of-Pairs Distance. J. Comput. Biol. 11, 986-1000 (2004)
-
(2004)
J. Comput. Biol
, vol.11
, pp. 986-1000
-
-
Ye, J.1
Janardan, R.2
-
14
-
-
16344382055
-
Relation between weight matrix and substitution matrix: Motif search by similarity
-
Zheng, W.M.: Relation between weight matrix and substitution matrix: Motif search by similarity. Bioinformatics 21, 938-943 (2005)
-
(2005)
Bioinformatics
, vol.21
, pp. 938-943
-
-
Zheng, W.M.1
-
15
-
-
33646199056
-
A protein structural alphabet and its substitution matrix CLESUM
-
Priami, C, Zelikovsky, A, eds, Springer, Heidelberg
-
Zheng, W.M., Liu, X.: A protein structural alphabet and its substitution matrix CLESUM. In: Priami, C., Zelikovsky, A. (eds.) Transactions on Computational Systems Biology II. LNCS (LNBI), vol. 3680, pp. 59-67. Springer, Heidelberg (2005), http://arxiv.org/abs/q-bio/0412046
-
(2005)
Transactions on Computational Systems Biology II. LNCS (LNBI)
, vol.3680
, pp. 59-67
-
-
Zheng, W.M.1
Liu, X.2
|