메뉴 건너뛰기




Volumn 91, Issue 8, 2008, Pages 3225-3236

A genome scan to detect quantitative trait loci for economically important traits in holstein cattle using two methods and a dense single nucleotide polymorphism map

Author keywords

Dairy cattle; Genome scan; Quantitative trait loci; Single nucleotide polymorphism

Indexed keywords

BOS; BOS TAURUS; BOVINAE;

EID: 49749141656     PISSN: 00220302     EISSN: 15253198     Source Type: Journal    
DOI: 10.3168/jds.2007-0333     Document Type: Article
Times cited : (121)

References (43)
  • 1
    • 85031390483 scopus 로고    scopus 로고
    • Affymetrix Inc, Affymetrix Inc, South San Francisco, CA, Online, Accessed Oct. 8, 2006
    • Affymetrix Inc. 2006. Affymetrix MegAllele GeneChip Bovine 10K SNP Array. Affymetrix Inc., South San Francisco, CA, Online. http://www.affymetrix.com/ support/technical/datasheets/bovine10k_snp_datasheet.pdf Accessed Oct. 8, 2006.
    • (2006) Affymetrix MegAllele GeneChip Bovine 10K SNP Array
  • 2
    • 0036178196 scopus 로고    scopus 로고
    • Bias in estimates of quantitative-trait-locus effect in genome scans: Demonstration of the phenomenon and a method-of-moments procedure for reducing bias
    • Allison, D. B., J. R. Fernandez, M. Heo, S. Zhu, C. Etzel, T. M. Beasley, and C. I. Amos. 2002. Bias in estimates of quantitative-trait-locus effect in genome scans: Demonstration of the phenomenon and a method-of-moments procedure for reducing bias. Am. J. Hum. Genet. 70:575-585.
    • (2002) Am. J. Hum. Genet , vol.70 , pp. 575-585
    • Allison, D.B.1    Fernandez, J.R.2    Heo, M.3    Zhu, S.4    Etzel, C.5    Beasley, T.M.6    Amos, C.I.7
  • 3
    • 0032253713 scopus 로고    scopus 로고
    • Detection of putative loci affecting milk production and composition, health, and type traits in a United States Holstein population
    • Ashwell, M. S., Y. Da, C. P. Van Tassell, P. M. VanRaden, R. H. Miller, and C. E. Rexroad Jr. 1998. Detection of putative loci affecting milk production and composition, health, and type traits in a United States Holstein population. J. Dairy Sci. 81:3309-3314.
    • (1998) J. Dairy Sci , vol.81 , pp. 3309-3314
    • Ashwell, M.S.1    Da, Y.2    Van Tassell, C.P.3    VanRaden, P.M.4    Miller, R.H.5    Rexroad Jr., C.E.6
  • 5
    • 27644573508 scopus 로고    scopus 로고
    • Detection of quantitative trait loci influencing conformation traits and calving ease in Holstein-Friesian cattle
    • Ashwell, M. S., D. W. Heyen, J. I. Weller, M. Ron, T. S. Sonstegard, C. P. Van Tassell, and H. A. Lewin. 2005. Detection of quantitative trait loci influencing conformation traits and calving ease in Holstein-Friesian cattle. J. Dairy Sci. 88:4111-4119.
    • (2005) J. Dairy Sci , vol.88 , pp. 4111-4119
    • Ashwell, M.S.1    Heyen, D.W.2    Weller, J.I.3    Ron, M.4    Sonstegard, T.S.5    Van Tassell, C.P.6    Lewin, H.A.7
  • 6
    • 85031379584 scopus 로고    scopus 로고
    • Benjamini, Y., and T. Hochberg. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Stat. Soc. [Ser A] 85:289-300.
    • Benjamini, Y., and T. Hochberg. 1995. Controlling the false discovery rate: A practical and powerful approach to multiple testing. J. R. Stat. Soc. [Ser A] 85:289-300.
  • 11
    • 34250076764 scopus 로고
    • Selective genotyping for determination of linkage between a marker locus and a quantitative trait loci
    • Darvasi, A., and M. Soller. 1992. Selective genotyping for determination of linkage between a marker locus and a quantitative trait loci. Theor. Appl. Genet. 85:353-359.
    • (1992) Theor. Appl. Genet , vol.85 , pp. 353-359
    • Darvasi, A.1    Soller, M.2
  • 12
    • 0033361905 scopus 로고    scopus 로고
    • Multipoint oligogenic analysis of age-at-onset data with applications to Alzheimer disease pedigrees
    • Daw, E. W., S. C. Heath, and E. M. Wijsman. 1999. Multipoint oligogenic analysis of age-at-onset data with applications to Alzheimer disease pedigrees. Am. J. Hum. Genet. 64:839-851.
    • (1999) Am. J. Hum. Genet , vol.64 , pp. 839-851
    • Daw, E.W.1    Heath, S.C.2    Wijsman, E.M.3
  • 15
    • 0034532484 scopus 로고    scopus 로고
    • Mapping quantitative trait loci in complex pedigrees: A two-step variance component approach
    • George, A. W., P. M. Visscher, and C. S. Haley. 2000. Mapping quantitative trait loci in complex pedigrees: A two-step variance component approach. Genetics 156:2081-2092.
    • (2000) Genetics , vol.156 , pp. 2081-2092
    • George, A.W.1    Visscher, P.M.2    Haley, C.S.3
  • 19
    • 0035209177 scopus 로고    scopus 로고
    • Large upward bias in estimation of locus-specific effects from genomewide scans
    • Goring, H. H. H., J. D. Terwilliger, and J. Blangero. 2001. Large upward bias in estimation of locus-specific effects from genomewide scans. Am. J. Hum. Genet. 69:1357-1369.
    • (2001) Am. J. Hum. Genet , vol.69 , pp. 1357-1369
    • Goring, H.H.H.1    Terwilliger, J.D.2    Blangero, J.3
  • 20
    • 1942453327 scopus 로고    scopus 로고
    • Comparing linkage disequilibrium-based methods for fine mapping quantitative trait loci
    • Grapes, L., J. C. Dekkers, M. F. Rothschild, and R. L. Fernando. 2004. Comparing linkage disequilibrium-based methods for fine mapping quantitative trait loci. Genetics 166:1561-1570.
    • (2004) Genetics , vol.166 , pp. 1561-1570
    • Grapes, L.1    Dekkers, J.C.2    Rothschild, M.F.3    Fernando, R.L.4
  • 22
    • 0033028403 scopus 로고    scopus 로고
    • Linkage information content of polymorphic genetic markers
    • Guo, X., and R. C. Elston. 1999. Linkage information content of polymorphic genetic markers. Hum. Hered. 49:112-118.
    • (1999) Hum. Hered , vol.49 , pp. 112-118
    • Guo, X.1    Elston, R.C.2
  • 23
    • 0030833349 scopus 로고    scopus 로고
    • Markov chain Monte Carlo segregation and linkage analysis for oligogenic models
    • Heath, S. C. 1997. Markov chain Monte Carlo segregation and linkage analysis for oligogenic models. Am. J. Hum. Genet. 61:748-760.
    • (1997) Am. J. Hum. Genet , vol.61 , pp. 748-760
    • Heath, S.C.1
  • 25
    • 33646226097 scopus 로고
    • Linkage disequilibrium in finite populations
    • Hill, W. G., and A. Robertson. 1968. Linkage disequilibrium in finite populations. Theor. Appl. Genet. 38:226-231.
    • (1968) Theor. Appl. Genet , vol.38 , pp. 226-231
    • Hill, W.G.1    Robertson, A.2
  • 26
    • 0032086174 scopus 로고    scopus 로고
    • Estimation of candidate gene effects in dairy cattle populations
    • Israel, C., and J. I. Weller. 1998. Estimation of candidate gene effects in dairy cattle populations. J. Dairy Sci. 81:1653-1662.
    • (1998) J. Dairy Sci , vol.81 , pp. 1653-1662
    • Israel, C.1    Weller, J.I.2
  • 27
    • 1442314052 scopus 로고    scopus 로고
    • Quantitative trait loci mapping in dairy cattle: Review and meta-analysis
    • Khatkar, M. S., P. C. Thomson, I. Tammen, and H. W. Raadsma. 2004. Quantitative trait loci mapping in dairy cattle: Review and meta-analysis. Genet. Sel. Evol. 36:163-190.
    • (2004) Genet. Sel. Evol , vol.36 , pp. 163-190
    • Khatkar, M.S.1    Thomson, P.C.2    Tammen, I.3    Raadsma, H.W.4
  • 29
    • 85031370582 scopus 로고    scopus 로고
    • National Centre for Biotechnology Information, Online, Accessed May 17, 2006
    • National Centre for Biotechnology Information. 2006. Bovine Micro-satellite Framework cM Map. NCBI Online. http://www.ncbi.nlm-.nih.gov/ mapview/ Accessed May 17, 2006.
    • (2006) Bovine Micro-satellite Framework cM Map
  • 32
    • 33746042987 scopus 로고    scopus 로고
    • The bovine QTL viewer: A web accessible database of bovine quantitative trait loci
    • Polineni, P., P. Aragonda, S. R. Xavier, R. Furuta, and D. L. Adelson. 2006. The bovine QTL viewer: A web accessible database of bovine quantitative trait loci. BMC Bioinformatics 7:283.
    • (2006) BMC Bioinformatics , vol.7 , pp. 283
    • Polineni, P.1    Aragonda, P.2    Xavier, S.R.3    Furuta, R.4    Adelson, D.L.5
  • 33
    • 0036835912 scopus 로고    scopus 로고
    • Interval and composite interval mapping of somatic cell score, yield, and components of milk in dairy cattle
    • Rodriguez-Zas, S. L., B. R, Southey, D. W. Heyen, and H. A. Lewin. 2002. Interval and composite interval mapping of somatic cell score, yield, and components of milk in dairy cattle. J. Dairy Sci. 85:3081-3091.
    • (2002) J. Dairy Sci , vol.85 , pp. 3081-3091
    • Rodriguez-Zas, S.L.B.R.1    Southey2    Heyen, D.W.3    Lewin, H.A.4
  • 34
    • 44349160682 scopus 로고    scopus 로고
    • Extent of linkage disequilibrium in Holstein cattle in North America
    • Sargolzaei, M., F. S. Schenkel, G. B. Jansen, and L. R. Schaeffer. 2008. Extent of linkage disequilibrium in Holstein cattle in North America. J. Dairy Sci. 91:2106-2117.
    • (2008) J. Dairy Sci , vol.91 , pp. 2106-2117
    • Sargolzaei, M.1    Schenkel, F.S.2    Jansen, G.B.3    Schaeffer, L.R.4
  • 35
    • 0034168984 scopus 로고    scopus 로고
    • Whole genome scan to detect quantitative trait loci for conformation and functional traits in dairy cattle
    • Schrooten, C., H. Bovenhuis, W. Coppieters, and J. A. van Arendonk. 2000. Whole genome scan to detect quantitative trait loci for conformation and functional traits in dairy cattle. J. Dairy Sci. 83:795-806.
    • (2000) J. Dairy Sci , vol.83 , pp. 795-806
    • Schrooten, C.1    Bovenhuis, H.2    Coppieters, W.3    van Arendonk, J.A.4
  • 36
    • 84907319426 scopus 로고
    • Asymptotic properties of maximum likelihood estimators and likelihood ratio tests under nonstandard conditions
    • Self, S. G., and K. Y. Liang. 1987. Asymptotic properties of maximum likelihood estimators and likelihood ratio tests under nonstandard conditions. J. Am. Stat. Assoc. 82:605-610.
    • (1987) J. Am. Stat. Assoc , vol.82 , pp. 605-610
    • Self, S.G.1    Liang, K.Y.2
  • 37
    • 84971683074 scopus 로고
    • Improvement of metric traits through specific genetic loci
    • Smith, C. 1967. Improvement of metric traits through specific genetic loci. Anim. Prod. 9:349-358.
    • (1967) Anim. Prod , vol.9 , pp. 349-358
    • Smith, C.1
  • 41
    • 0025493522 scopus 로고
    • Power of daughter and granddaughter designs for determining linkage between marker loci and quantitative trait loci in dairy cattle
    • Weller, J. I., Y. Kashi, and M. Soller. 1990. Power of daughter and granddaughter designs for determining linkage between marker loci and quantitative trait loci in dairy cattle. J. Dairy Sci. 73:2525-2537.
    • (1990) J. Dairy Sci , vol.73 , pp. 2525-2537
    • Weller, J.I.1    Kashi, Y.2    Soller, M.3


* 이 정보는 Elsevier사의 SCOPUS DB에서 KISTI가 분석하여 추출한 것입니다.