X-ray structure of a soluble Rieske-type ferredoxin from Mus musculus

Acta Crystallographica Section D: Biological Crystallography

Volumn 64, Issue 9, 2008, Pages 933-940

  Levin, Elena J ^a   Elsen, Nathaniel L ^a   Seder, Kory D ^a   McCoy, Jason G ^a   Fox, Brian G ^a   Phillips Jr , George N ^a  

^a UNIVERSITY OF WISCONSIN MADISON   (United States)

Author keywords

Iron sulfur proteins; Oxidoreductases; Rieske type ferredoxins

Indexed keywords

FERREDOXIN;

ANIMAL; ARTICLE; BINDING SITE; CHEMICAL STRUCTURE; CHEMISTRY; CRYSTALLIZATION; ELECTRICITY; HUMAN; MOLECULAR CLONING; MOUSE; PHYLOGENY; SOLUBILITY; X RAY CRYSTALLOGRAPHY;

ANIMALS; BINDING SITES; CLONING, MOLECULAR; CRYSTALLIZATION; CRYSTALLOGRAPHY, X-RAY; ELECTROSTATICS; FERREDOXINS; HUMANS; MICE; MODELS, MOLECULAR; PHYLOGENY; SOLUBILITY;

BACTERIA (MICROORGANISMS); EUKARYOTA; MUS MUSCULUS; PROKARYOTA;

EID: 49749128925     PISSN: 09074449     EISSN: 13990047     Source Type: Journal    
DOI: 10.1107/S0907444908021653     Document Type: Article

References (45)

1. Adams, P. D., Grosse-Kunstleve, R. W., Hung, L.-W., Ioerger, T. R., McCoy, A. J., Moriarty, N. W., Read, R. J., Sacchettini, J. C., Sauter, N. K. & Terwilliger, T. C. (2002). Acta Cryst. D58, 1948-1954.
2. Bailey, L. J., Elsen, N. L., Pierce, B. S. & Fox, B. G. (2007). Protein Expr. Purif. 57, 9-16.
3. Baker, N. A., Sept, D., Joseph, S., Holst, M. J. & McCammon, J. A. (2001). Proc. Natl Acad. Sci. USA, 98, 10037-10041.
4. Bonisch, H., Schmidt, C. L., Schafer, G. & Ladenstein, R. (2002). J. Mol. Biol. 319, 791-805.
5. Carrell, C. J., Zhang, H., Cramer, W. A. & Smith, J. L. (1997). Structure, 5, 1613-1625.
6. Clewley, J. P. & Arnold, C. (1997). Methods Mol. Biol. 70, 119-129.
7. Cohen, S. X., Morris, R. J., Fernandez, F. J., Ben Jelloul, M., Kakaris, M., Parthasarathy, V., Lamzin, V. S., Kleywegt, G. J. & Perrakis, A. (2004). Acta Cryst. D60, 2222-2229.
8. Colbert, C. L., Couture, M. M., Eltis, L. D. & Bolin, J. T. (2000). Structure, 8, 1267-1278.
9. Davis, I. W., Leaver-Fay, A., Chen, V. B., Block, J. N., Kapral, G. J., Wang, X., Murray, L. W., Arendall, W. B. III, Snoeyink, J., Richardson, J. S. & Richardson, D. C. (2007). Nucleic Acids Res. 35, W375-W383.
10. Dong, X., Fushinobu, S., Fukuda, E., Terada, T., Nakamura, S., Shimizu, K., Nojiri, H., Omori, T., Shoun, H. & Wakagi, T. (2005). J. Bacteriol. 187, 2483-2490.
11. Ellis, P. J., Conrads, T., Hille, R. & Kuhn, P. (2001). Structure, 9, 125-132.
12. Elsen, N. L., Moe, L. A., McMartin, L. A. & Fox, B. G. (2007). Biochemistry, 46, 976-986.
13. Emsley, P. & Cowtan, K. (2004). Acta Cryst. D60, 2126-2132.
14. Fee, J. A., Findling, K. L., Yoshida, T., Hille, R., Tarr, G. E., Hearshen, D. O., Dunham, W. R., Day, E. P., Kent, T. A. & Münck, E. (1984). J. Biol. Chem. 259, 124-133.
15. Ferraro, D. J., Gakhar, L. & Ramaswamy, S. (2005). Biochem. Biophys. Res. Commun. 338, 175-190.
16. Fischer, D. S. & Price, D. C. (1964). Clin. Chem. 10, 21-31.
17. Friemann, R., Ivkovic Jensen, M. M., Lessner, D. J., Yu, C. L., Gibson, D. T., Parales, R. E., Eklund, H. & Ramaswamy, S. (2005). J. Mol. Biol. 348, 1139-1151.
18. Furusawa, Y., Nagarajan, V., Tanokura, M., Masai, E., Fukuda, M. & Senda, T. (2004). J. Mol. Biol. 342, 1041-1052.
19. Hunsicker-Wang, L. M., Heine, A., Chen, Y., Luna, E. P., Todaro, T., Zhang, Y. M., Williams, P. A., McRee, D. E., Hirst, J., Stout, C. D. & Fee, J. A. (2003). Biochemistry, 42, 7303-7317.
20. Iwata, S., Saynovits, M., Link, T. A. & Michel, H. (1996). Structure, 4, 567-579.
21. Kauppi, B., Lee, K., Carredano, E., Parales, R. E., Gibson, D. T., Eklund, H. & Ramaswamy, S. (1998). Structure, 6, 571-586.
22. Leahy, J. G., Batchelor, P. J. & Morcomb, S. M. (2003). FEMS Microbiol. Rev. 27, 449-479.
23. Link, T. A. & Iwata, S. (1996). Biochim. Biophys. Acta, 1275, 54-60.
24. Lledo, B., Martinez-Espinosa, R. M., Marhuenda-Egea, F. C. & Bonete, M. J. (2004). Biochim. Biophys. Acta, 1674, 50-59.
25. Martins, B. M., Svetlitchnaia, T. & Dobbek, H. (2005). Structure, 13, 817-824.
26. Moe, L. A., Bingman, C. A., Wesenberg, G. E., Phillips, G. N. & Fox, B. G. (2006). Acta Cryst. D62, 476-482.
27. Murshudov, G. N., Vagin, A. A. & Dodson, E. J. (1997). Acta Cryst. D53, 240-255.
28. Nam, J. W., Noguchi, H., Fujimoto, Z., Mizuno, H., Ashikawa, Y., Abo, M., Fushinobu, S., Kobashi, N., Wakagi, T., Iwata, K., Yoshida, T., Habe, H., Yamane, H., Omori, T. & Nojiri, H. (2005). Proteins, 58, 779-789.
29. Nojiri, H., Ashikawa, Y., Noguchi, H., Nam, J. W., Urata, M., Fujimoto, Z., Uchimura, H., Terada, T., Nakamura, S., Shimizu, K., Yoshida, T., Habe, H. & Omori, T. (2005). J. Mol. Biol. 351, 355-370.
30. Otwinowski, Z. & Minor, W. (1997). Methods Enzymol. 276, 207-326.
31. Painter, J. & Merritt, E. A. (2006). Acta Cryst. D62, 439-450.
32. Pikus, J. D., Studts, J. M., Achim, C., Kauffmann, K. E., Münck, E., Steffan, R. J., McClay, K. & Fox, B. G. (1996). Biochemistry, 35, 9106-9119.
33. Rieske, J. S. (1968). J. Biol. Chem. 239, 3017-3022.
34. Ritchie, S. W., Redinbaugh, M. G., Shiraishi, N., Vrba, J. M. & Campbell, W. H. (1994). Plant Mol. Biol. 26, 679-690.
35. Schafer, G., Purschke, W. G., Gleissner, M. & Schmidt, C. L. (1996). Biochim. Biophys. Acta, 1275, 16-20.
36. Schlenzka, W., Shaw, L., Kelm, S., Schmidt, C. L., Bill, E., Trautwein, A. X., Lottspeich, F. & Schauer, R. (1996). FEBS Lett. 385, 197-200.
37. Schmidt, C. L. & Shaw, L. (2001). J. Bioenerg. Biomembr. 33, 9-26.
38. Sharff, A. J., Rodseth, L. E., Spurlino, J. C. & Quiocho, F. A. (1992). Biochemistry, 31, 10657-10663.
39. Sheldrick, G. M. (2008). Acta Cryst. A64, 112-122.
40. Thao, S., Zhao, Q., Kimball, T., Steffen, E., Blommel, P. G., Riters, M., Newman, C. S., Fox, B. G. & Wrobel, R. L. (2004). J. Struct. Funct. Genomics, 5, 267-276.
41. Trumpower, B. L. & Gennis, R. B. (1994). Annu. Rev. Biochem. 63, 675-716.
42. Vagin, A. & Teplyakov, A. (1997). J. Appl. Cryst. 30, 1022-1025.
43. Vonrhein, C., Blanc, E., Roversi, P. & Bricogne, G. (2006). Methods Mol. Biol. 364, 215-230.
44. Winn, M. D., Isupov, M. N. & Murshudov, G. N. (2001). Acta Cryst. D57, 122-133.
45. Xie, Q., Lin, T., Zhang, Y., Zheng, J. & Bonanno, J. A. (2005). J. Biol. Chem. 280, 19673-19681.