-
1
-
-
0003604405
-
-
3rd ed, Cold Spring Harbor Laboratory Press, New York
-
Gesteland, R. F., Cech, T. R., and Atkins, J. F. (2006) The RNA World, 3rd ed., Cold Spring Harbor Laboratory Press, New York.
-
(2006)
The RNA World
-
-
Gesteland, R.F.1
Cech, T.R.2
Atkins, J.F.3
-
2
-
-
0029163563
-
RNA chaperones and the RNA folding problem
-
Herschlag, D. (1995) RNA chaperones and the RNA folding problem. J. Biol. Chem. 270, 20871-20874.
-
(1995)
J. Biol. Chem
, vol.270
, pp. 20871-20874
-
-
Herschlag, D.1
-
3
-
-
0030916948
-
Protein-facilitated RNA folding
-
Weeks, K. M. (1997) Protein-facilitated RNA folding. Curr. Opin. Struct. Biol. 7, 336-342.
-
(1997)
Curr. Opin. Struct. Biol
, vol.7
, pp. 336-342
-
-
Weeks, K.M.1
-
4
-
-
8444229753
-
Strategies for RNA folding and assembly
-
Schroeder, R., Barta, A., and Semrad, K. (2004) Strategies for RNA folding and assembly. Nat. Rev. Mol. Cell Biol. 5, 908-919.
-
(2004)
Nat. Rev. Mol. Cell Biol
, vol.5
, pp. 908-919
-
-
Schroeder, R.1
Barta, A.2
Semrad, K.3
-
5
-
-
0025678737
-
Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis
-
Michel, F., and Westhof, E. (1990) Modelling of the three-dimensional architecture of group I catalytic introns based on comparative sequence analysis. J. Mol. Biol. 216, 585-610.
-
(1990)
J. Mol. Biol
, vol.216
, pp. 585-610
-
-
Michel, F.1
Westhof, E.2
-
6
-
-
0025367254
-
Self-Splicing of Group I Introns
-
Cech, T. R. (1990) Self-Splicing of Group I Introns. Annu. Rev. Biochem. 59, 543-568.
-
(1990)
Annu. Rev. Biochem
, vol.59
, pp. 543-568
-
-
Cech, T.R.1
-
7
-
-
20444496805
-
Structure and assembly of group I introns
-
Woodson, S. A. (2005) Structure and assembly of group I introns. Curr. Opin. Struct. Biol. 15, 324-330.
-
(2005)
Curr. Opin. Struct. Biol
, vol.15
, pp. 324-330
-
-
Woodson, S.A.1
-
8
-
-
30944458838
-
Atomic level architecture of group I introns revealed
-
Vicens, Q., and Cech, T. R. (2006) Atomic level architecture of group I introns revealed. Trends Biochem. Sci. 31, 41-51.
-
(2006)
Trends Biochem. Sci
, vol.31
, pp. 41-51
-
-
Vicens, Q.1
Cech, T.R.2
-
9
-
-
0037039310
-
Recruitment of intron-encoded and co-opted proteins in splicing of the bI3 group I intron RNA
-
Bassi, G. S., de Oliveira, D. M., White, M. F., and Weeks, K. M. (2002) Recruitment of intron-encoded and co-opted proteins in splicing of the bI3 group I intron RNA. Proc. Natl. Acad. Sci. U.S.A. 99, 128-133.
-
(2002)
Proc. Natl. Acad. Sci. U.S.A
, vol.99
, pp. 128-133
-
-
Bassi, G.S.1
de Oliveira, D.M.2
White, M.F.3
Weeks, K.M.4
-
10
-
-
0041972557
-
Kinetic and thermodynamic framework for assembly of the six-component bI3 group I intron ribonucleoprotein catalyst
-
Bassi, G. S., and Weeks, K. M. (2003) Kinetic and thermodynamic framework for assembly of the six-component bI3 group I intron ribonucleoprotein catalyst. Biochemistry 42, 9980-9988.
-
(2003)
Biochemistry
, vol.42
, pp. 9980-9988
-
-
Bassi, G.S.1
Weeks, K.M.2
-
11
-
-
26944447183
-
Evolution from DNA to RNA recognition by the bI3 LAGLIDADG maturase
-
Longo, A., Leonard, C. W., Bassi, G. S., Berndt, D., Krahn, J. M., Hall, T. M., and Weeks, K. M. (2005) Evolution from DNA to RNA recognition by the bI3 LAGLIDADG maturase. Nat. Struct. Mol. Biol. 12, 779-787.
-
(2005)
Nat. Struct. Mol. Biol
, vol.12
, pp. 779-787
-
-
Longo, A.1
Leonard, C.W.2
Bassi, G.S.3
Berndt, D.4
Krahn, J.M.5
Hall, T.M.6
Weeks, K.M.7
-
13
-
-
0034043484
-
Recent insights on RNA folding mechanisms from catalytic RNA
-
Woodson, S. A. (2000) Recent insights on RNA folding mechanisms from catalytic RNA. Cell. Mol. Life Sci. 57, 796-808.
-
(2000)
Cell. Mol. Life Sci
, vol.57
, pp. 796-808
-
-
Woodson, S.A.1
-
14
-
-
0032578472
-
RNA folding causes secondary structure rearrangement
-
Wu, M., and Tinoco, I., Jr. (1998) RNA folding causes secondary structure rearrangement. Proc. Natl. Acad. Sci. U.S.A. 95, 11555-11560.
-
(1998)
Proc. Natl. Acad. Sci. U.S.A
, vol.95
, pp. 11555-11560
-
-
Wu, M.1
Tinoco Jr., I.2
-
15
-
-
0033600805
-
Facilitation of group I splicing in vivo: Misfolding of the Tetrahymena IVS and the role of ribosomal RNA exons
-
Nikolcheva, T., and Woodson, S. A. (1999) Facilitation of group I splicing in vivo: misfolding of the Tetrahymena IVS and the role of ribosomal RNA exons. J. Mol. Biol. 292, 557-567.
-
(1999)
J. Mol. Biol
, vol.292
, pp. 557-567
-
-
Nikolcheva, T.1
Woodson, S.A.2
-
16
-
-
0032763658
-
Quantifying the energetic interplay of RNA tertiary and secondary structure interactions
-
Silverman, S. K., Zheng, M., Wu, M., Tinoco, I., Jr., and Cech, T. R. (1999) Quantifying the energetic interplay of RNA tertiary and secondary structure interactions. RNA 5, 1665-1674.
-
(1999)
RNA
, vol.5
, pp. 1665-1674
-
-
Silverman, S.K.1
Zheng, M.2
Wu, M.3
Tinoco Jr., I.4
Cech, T.R.5
-
17
-
-
16244412610
-
RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE)
-
Merino, E. J., Wilkinson, K. A., Coughlan, J. L., and Weeks, K. M. (2005) RNA structure analysis at single nucleotide resolution by selective 2′-hydroxyl acylation and primer extension (SHAPE). J. Am. Chem. Soc. 127, 4223-4231.
-
(2005)
J. Am. Chem. Soc
, vol.127
, pp. 4223-4231
-
-
Merino, E.J.1
Wilkinson, K.A.2
Coughlan, J.L.3
Weeks, K.M.4
-
18
-
-
33947720028
-
Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): Quantitative RNA structure analysis at single nucleotide resolution
-
Wilkinson, K. A., Merino, E. J., and Weeks, K. M. (2006) Selective 2′-hydroxyl acylation analyzed by primer extension (SHAPE): quantitative RNA structure analysis at single nucleotide resolution. Nat. Protoc. 1, 1610-1616.
-
(2006)
Nat. Protoc
, vol.1
, pp. 1610-1616
-
-
Wilkinson, K.A.1
Merino, E.J.2
Weeks, K.M.3
-
19
-
-
40849123031
-
High-Throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states
-
Wilkinson, K. A., Gorelick, R. J., Vasa, S. M., Guex, N., Rein, A., Mathews, D. H., Giddings, M. C., and Weeks, K. M. (2008) High-Throughput SHAPE analysis reveals structures in HIV-1 genomic RNA strongly conserved across distinct biological states. PLoS Biol. 6, e96.
-
(2008)
PLoS Biol
, vol.6
-
-
Wilkinson, K.A.1
Gorelick, R.J.2
Vasa, S.M.3
Guex, N.4
Rein, A.5
Mathews, D.H.6
Giddings, M.C.7
Weeks, K.M.8
-
20
-
-
34247162792
-
A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry
-
Mortimer, S. A., and Weeks, K. M. (2007) A fast-acting reagent for accurate analysis of RNA secondary and tertiary structure by SHAPE chemistry. J. Am. Chem. Soc. 129, 4144-4145.
-
(2007)
J. Am. Chem. Soc
, vol.129
, pp. 4144-4145
-
-
Mortimer, S.A.1
Weeks, K.M.2
-
21
-
-
2442626706
-
Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure
-
Mathews, D. H., Disney, M. D., Childs, J. L., Schroeder, S. J., Zuker, M., and Turner, D. H. (2004) Incorporating chemical modification constraints into a dynamic programming algorithm for prediction of RNA secondary structure. Proc. Natl. Acad. Sci. U.S.A. 101, 7287-7292.
-
(2004)
Proc. Natl. Acad. Sci. U.S.A
, vol.101
, pp. 7287-7292
-
-
Mathews, D.H.1
Disney, M.D.2
Childs, J.L.3
Schroeder, S.J.4
Zuker, M.5
Turner, D.H.6
-
22
-
-
0025001288
-
Involvement of aminoacyl-tRNA synthetases and other proteins in group I and group II intron splicing
-
Lambowitz, A. M., and Perlman, P. S. (1990) Involvement of aminoacyl-tRNA synthetases and other proteins in group I and group II intron splicing. Trends Biochem. Sci. 15, 440-444.
-
(1990)
Trends Biochem. Sci
, vol.15
, pp. 440-444
-
-
Lambowitz, A.M.1
Perlman, P.S.2
-
23
-
-
0035933312
-
Protein-dependent transition states for ribonucleoprotein assembly
-
Webb, A. E., Rose, M. A., Westhof, E., and Weeks, K. M. (2001) Protein-dependent transition states for ribonucleoprotein assembly. J. Mol. Biol. 309, 1087-1100.
-
(2001)
J. Mol. Biol
, vol.309
, pp. 1087-1100
-
-
Webb, A.E.1
Rose, M.A.2
Westhof, E.3
Weeks, K.M.4
-
24
-
-
10044240394
-
Structural basis for the self-chaperoning function of an RNA collapsed state
-
Garcia, I., and Weeks, K. M. (2004) Structural basis for the self-chaperoning function of an RNA collapsed state. Biochemistry 43, 15179-15186.
-
(2004)
Biochemistry
, vol.43
, pp. 15179-15186
-
-
Garcia, I.1
Weeks, K.M.2
-
25
-
-
38049086319
-
Structure of a tyrosyl-tRNA synthetase splicing factor bound to a group I intron RNA
-
Paukstelis, P. J., Chen, J. H., Chase, E., Lambowitz, A. M., and Golden, B. L. (2008) Structure of a tyrosyl-tRNA synthetase splicing factor bound to a group I intron RNA. Nature 451, 94-97.
-
(2008)
Nature
, vol.451
, pp. 94-97
-
-
Paukstelis, P.J.1
Chen, J.H.2
Chase, E.3
Lambowitz, A.M.4
Golden, B.L.5
-
26
-
-
0022470564
-
Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension
-
Moazed, D., Stern, S., and Noller, H. F. (1986) Rapid chemical probing of conformation in 16 S ribosomal RNA and 30 S ribosomal subunits using primer extension. J. Mol. Biol. 187, 399-416.
-
(1986)
J. Mol. Biol
, vol.187
, pp. 399-416
-
-
Moazed, D.1
Stern, S.2
Noller, H.F.3
-
27
-
-
0027171312
-
Dynamics of in vitro assembly of 16S rRNA into 30S ribosomal subunits
-
Powers, T., Daubresse, G., and Noller, H. F. (1993) Dynamics of in vitro assembly of 16S rRNA into 30S ribosomal subunits. J. Mol. Biol. 232, 362-374.
-
(1993)
J. Mol. Biol
, vol.232
, pp. 362-374
-
-
Powers, T.1
Daubresse, G.2
Noller, H.F.3
-
28
-
-
28444479853
-
An assembly landscape for the 30S ribosomal subunit
-
Talkington, M. W., Siuzdak, G., and Williamson, J. R. (2005) An assembly landscape for the 30S ribosomal subunit. Nature 438, 628-632.
-
(2005)
Nature
, vol.438
, pp. 628-632
-
-
Talkington, M.W.1
Siuzdak, G.2
Williamson, J.R.3
-
29
-
-
52949152433
-
-
Vasa, S. M., Guex, N., Wilkinson, K. A., Weeks, K. M., and Giddings, M. C. (2008) ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis. RNA 14, in press.
-
Vasa, S. M., Guex, N., Wilkinson, K. A., Weeks, K. M., and Giddings, M. C. (2008) ShapeFinder: A software system for high-throughput quantitative analysis of nucleic acid reactivity information resolved by capillary electrophoresis. RNA 14, in press.
-
-
-
|